Wall clock time and date at job start Sat Apr 11 2020 04:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 109.47532 * 2 1 4 4 C 1.53000 * 109.47154 * 239.99576 * 2 1 3 5 5 C 1.52996 * 109.46870 * 65.00172 * 4 2 1 6 6 F 1.39905 * 109.46995 * 175.00064 * 5 4 2 7 7 F 1.39903 * 109.47245 * 295.00207 * 5 4 2 8 8 C 1.50700 * 109.46885 * 120.00233 * 2 1 3 9 9 O 1.21280 * 120.00437 * 24.84902 * 8 2 1 10 10 N 1.34786 * 119.99731 * 204.85020 * 8 2 1 11 11 C 1.46920 * 120.63021 * 5.23186 * 10 8 2 12 12 C 1.52760 * 109.00792 * 233.57899 * 11 10 8 13 13 C 1.53035 * 109.38461 * 305.59353 * 12 11 10 14 14 N 1.46503 * 109.45895 * 181.25973 * 13 12 11 15 15 C 1.36941 * 119.99973 * 299.92576 * 14 13 12 16 16 H 1.08003 * 120.00173 * 319.10938 * 15 14 13 17 17 C 1.38810 * 119.99767 * 139.09955 * 15 14 13 18 18 N 1.31622 * 120.00294 * 341.86511 * 17 15 14 19 19 Si 1.86804 * 119.99616 * 161.85917 * 17 15 14 20 20 H 1.48503 * 109.46992 * 60.00732 * 19 17 15 21 21 H 1.48501 * 109.46955 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47439 * 300.00211 * 19 17 15 23 23 C 1.46504 * 120.00210 * 119.93063 * 14 13 12 24 24 C 1.53001 * 109.46828 * 84.41621 * 23 14 13 25 25 O 1.42899 * 109.47216 * 65.00599 * 24 23 14 26 26 C 1.53037 * 109.54273 * 61.23710 * 13 12 11 27 27 C 1.46933 * 120.62601 * 185.51053 * 10 8 2 28 28 H 1.08998 * 109.47495 * 172.50817 * 1 2 3 29 29 H 1.09001 * 109.47134 * 52.50065 * 1 2 3 30 30 H 1.08999 * 109.46917 * 292.50901 * 1 2 3 31 31 H 1.09000 * 109.47766 * 185.00371 * 4 2 1 32 32 H 1.09004 * 109.47173 * 305.00346 * 4 2 1 33 33 H 1.08997 * 109.47167 * 55.00259 * 5 4 2 34 34 H 1.08996 * 109.58443 * 353.42055 * 11 10 8 35 35 H 1.09000 * 109.58432 * 113.84297 * 11 10 8 36 36 H 1.08997 * 109.56696 * 185.54999 * 12 11 10 37 37 H 1.09003 * 109.35678 * 65.50221 * 12 11 10 38 38 H 1.08997 * 109.45989 * 301.21560 * 13 12 11 39 39 H 0.97000 * 119.99742 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46732 * 204.41633 * 23 14 13 41 41 H 1.08996 * 109.46541 * 324.42039 * 23 14 13 42 42 H 1.09004 * 109.46309 * 185.00085 * 24 23 14 43 43 H 1.08990 * 109.47263 * 304.99660 * 24 23 14 44 44 H 0.96692 * 114.00273 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.49986 * 178.68183 * 26 13 12 46 46 H 1.09009 * 109.52121 * 58.60121 * 26 13 12 47 47 H 1.09005 * 109.58162 * 246.15423 * 27 10 8 48 48 H 1.08997 * 109.58961 * 6.44129 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0688 -2.4952 6 9 2.1975 -0.5279 -3.6288 7 9 0.2412 0.0721 -2.6129 8 6 2.0322 -0.7105 1.2305 9 8 1.3358 -1.5374 1.7800 10 7 3.2555 -0.4268 1.7202 11 6 4.0643 0.6515 1.1357 12 6 5.4364 0.0959 0.7587 13 6 6.0680 -0.5714 1.9826 14 7 7.3967 -1.0784 1.6307 15 6 7.5324 -2.0128 0.6389 16 1 6.8246 -2.8248 0.5614 17 6 8.5797 -1.9161 -0.2671 18 7 9.2209 -0.7759 -0.4126 19 14 9.0790 -3.4043 -1.2797 20 1 7.9287 -3.8485 -2.1072 21 1 10.2154 -3.0423 -2.1645 22 1 9.4903 -4.5053 -0.3720 23 6 8.5802 -0.5858 2.3400 24 6 8.7667 -1.3806 3.6340 25 8 9.0555 -2.7440 3.3182 26 6 5.1851 -1.7327 2.4451 27 6 3.8079 -1.1942 2.8449 28 1 -0.3634 -1.0188 -0.1340 29 1 -0.3633 0.6256 -0.8153 30 1 -0.3633 0.3934 0.9494 31 1 3.1263 -0.7997 -1.2056 32 1 1.6053 -1.7199 -1.2951 33 1 1.9949 1.0940 -2.4081 34 1 3.5699 1.0368 0.2440 35 1 4.1854 1.4533 1.8641 36 1 6.0774 0.9080 0.4157 37 1 5.3220 -0.6392 -0.0380 38 1 6.1593 0.1582 2.7872 39 1 9.9530 -0.7085 -1.0454 40 1 9.4597 -0.7087 1.7081 41 1 8.4481 0.4697 2.5777 42 1 9.5931 -0.9569 4.2046 43 1 7.8530 -1.3304 4.2261 44 1 9.1865 -3.3079 4.0926 45 1 5.6474 -2.2221 3.3024 46 1 5.0731 -2.4510 1.6328 47 1 3.9077 -0.5459 3.7155 48 1 3.1432 -2.0248 3.0821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098430607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:01:56 Heat of formation + Delta-G solvation = -193.538970 kcal Electronic energy + Delta-G solvation = -31188.749141 eV Core-core repulsion = 26720.932403 eV Total energy + Delta-G solvation = -4467.816738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.92259 -47.94303 -41.41184 -39.15938 -37.67051 -36.24452 -36.09707 -33.71116 -32.08740 -31.91362 -30.03612 -29.39223 -26.83908 -25.81794 -24.55784 -24.09960 -23.09196 -22.08605 -21.32648 -19.81943 -19.01310 -18.32838 -18.17665 -18.07930 -17.83307 -17.16654 -16.78671 -16.61242 -16.09715 -15.95928 -15.59656 -15.48336 -15.10686 -14.73890 -14.70510 -14.57937 -14.42233 -14.26614 -14.07159 -13.91271 -13.70983 -13.46855 -13.24135 -13.07042 -12.98290 -12.76930 -12.62841 -12.44757 -12.38607 -12.30304 -12.13632 -11.98078 -11.91550 -11.81205 -11.57895 -11.45652 -11.12437 -10.68764 -10.59954 -10.38268 -9.61248 -8.37766 -7.72856 -5.33379 1.43422 1.47067 1.50718 1.52905 2.02899 2.55858 2.88325 3.31255 3.37402 3.46503 3.51443 3.58153 3.69372 3.84830 3.95843 4.01674 4.16368 4.21165 4.24557 4.29935 4.43333 4.49085 4.58579 4.62791 4.66064 4.73618 4.76276 4.84491 4.85762 4.91954 4.93995 4.97175 5.03851 5.11651 5.18847 5.24020 5.33311 5.49245 5.65430 5.71861 5.76570 5.85347 6.44602 6.59590 7.14613 7.20468 7.32039 7.99641 8.50214 9.23432 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003963 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.529758 B = 7063.159891 C = 8557.529028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.136 0.864 4 C -0.162 4.162 5 C 0.266 3.734 6 F -0.221 7.221 7 F -0.208 7.208 8 C 0.516 3.484 9 O -0.585 6.585 10 N -0.604 5.604 11 C 0.110 3.890 12 C -0.125 4.125 13 C 0.173 3.827 14 N -0.584 5.584 15 C -0.221 4.221 16 H 0.034 0.966 17 C -0.024 4.024 18 N -0.916 5.916 19 Si 0.934 3.066 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.290 1.290 23 C 0.144 3.856 24 C 0.065 3.935 25 O -0.578 6.578 26 C -0.124 4.124 27 C 0.121 3.879 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.374 0.626 45 H 0.062 0.938 46 H 0.032 0.968 47 H 0.086 0.914 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 8.496 4.089 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.154 0.846 4 C -0.201 4.201 5 C 0.213 3.787 6 F -0.203 7.203 7 F -0.189 7.189 8 C 0.305 3.695 9 O -0.465 6.465 10 N -0.336 5.336 11 C -0.012 4.012 12 C -0.165 4.165 13 C 0.066 3.934 14 N -0.303 5.303 15 C -0.352 4.352 16 H 0.052 0.948 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.765 3.235 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.217 1.217 23 C 0.018 3.982 24 C -0.015 4.015 25 O -0.383 6.383 26 C -0.164 4.164 27 C -0.002 4.002 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.174 0.826 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.220 0.780 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.105 0.895 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.923 8.344 3.627 15.804 hybrid contribution 0.924 -1.709 -0.178 1.951 sum -11.998 6.635 3.449 14.138 Atomic orbital electron populations 1.21895 0.91674 1.02764 1.03352 1.21292 0.98807 1.01765 0.90364 0.84646 1.22586 1.04085 1.00731 0.92685 1.22202 0.74265 1.00301 0.81939 1.92980 1.85118 1.86979 1.55206 1.92929 1.32060 1.97772 1.96184 1.20982 0.80775 0.82205 0.85537 1.90652 1.57207 1.36637 1.62034 1.48280 1.16093 1.35244 1.33940 1.21981 0.90503 0.88606 1.00097 1.22051 0.95281 1.00013 0.99177 1.20513 0.84911 0.92986 0.94977 1.43802 1.00924 1.46979 1.38622 1.18597 1.10873 1.01640 1.04123 0.94839 1.25542 1.01395 0.97129 0.98017 1.70040 1.24587 1.23795 1.37650 0.85885 0.77426 0.81644 0.78592 1.20854 1.22009 1.21730 1.20900 0.92570 0.93530 0.91219 1.22947 0.97521 0.82631 0.98352 1.86766 1.93938 1.21164 1.36437 1.22157 0.94777 0.99299 1.00212 1.21543 0.93738 0.96131 0.88770 0.93685 0.88669 0.92297 0.88336 0.90647 0.82589 0.87373 0.88841 0.91900 0.94173 0.91446 0.94466 0.92537 0.93121 0.93699 0.94193 0.77976 0.91978 0.94868 0.89545 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.76 71.98 0.56 -2.07 16 2 C -0.10 -1.90 1.90 -11.54 -0.02 -1.92 16 3 H 0.14 1.54 6.25 -2.39 -0.01 1.53 16 4 C -0.16 -3.29 4.87 30.59 0.15 -3.14 16 5 C 0.27 4.54 5.25 71.98 0.38 4.91 16 6 F -0.22 -5.28 17.34 44.97 0.78 -4.50 16 7 F -0.21 -3.98 14.30 44.97 0.64 -3.34 16 8 C 0.52 13.93 6.79 87.66 0.60 14.53 16 9 O -0.58 -20.51 15.67 -3.03 -0.05 -20.56 16 10 N -0.60 -15.45 2.98 -819.73 -2.44 -17.90 16 11 C 0.11 2.34 6.25 86.22 0.54 2.88 16 12 C -0.13 -4.00 5.29 30.53 0.16 -3.84 16 13 C 0.17 6.07 2.60 45.01 0.12 6.19 16 14 N -0.58 -26.12 2.30 -677.89 -1.56 -27.68 16 15 C -0.22 -11.58 7.98 84.03 0.67 -10.91 16 16 H 0.03 1.87 6.92 -2.91 -0.02 1.85 16 17 C -0.02 -1.31 4.95 84.86 0.42 -0.89 16 18 N -0.92 -51.64 11.60 21.65 0.25 -51.39 16 19 Si 0.93 45.85 29.59 68.60 2.03 47.88 16 20 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 22 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 23 C 0.14 6.22 5.55 86.38 0.48 6.70 16 24 C 0.07 2.31 7.39 71.98 0.53 2.85 16 25 O -0.58 -22.90 13.40 -148.98 -2.00 -24.89 16 26 C -0.12 -4.19 5.29 30.67 0.16 -4.03 16 27 C 0.12 3.36 6.42 86.36 0.55 3.91 16 28 H 0.04 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.09 1.43 5.96 -2.39 -0.01 1.41 16 30 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 31 H 0.10 2.19 8.09 -2.39 -0.02 2.17 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 1.63 5.33 -2.39 -0.01 1.62 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.53 7.71 -2.39 -0.02 1.51 16 38 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 39 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 40 H 0.06 2.95 5.74 -2.39 -0.01 2.94 16 41 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 42 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.37 10.44 9.12 -74.06 -0.68 9.76 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.03 1.34 7.09 -2.38 -0.02 1.32 16 47 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.07 2.18 7.04 -2.39 -0.02 2.16 16 Total: -1.00 -71.90 381.59 3.25 -68.65 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.30 Total: 18.57 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 5.29 Total: 15.15 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -3.75 Total: -96.96 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -2.04 Total: -45.45 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 1.42 Total: -7.83 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -71.90 3.25 -68.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098430607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.893 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds