Wall clock time and date at job start Sat Apr 11 2020 04:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46890 * 2 1 4 4 N 1.46498 * 109.46762 * 239.99864 * 2 1 3 5 5 C 1.36937 * 120.00074 * 85.00342 * 4 2 1 6 6 H 1.07994 * 120.00082 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99944 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47023 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47583 * 119.99606 * 9 7 5 12 12 H 1.48499 * 109.47162 * 239.99848 * 9 7 5 13 13 C 1.52994 * 109.46987 * 119.99754 * 2 1 3 14 14 H 1.09003 * 109.49983 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.50004 * 299.99809 * 13 2 1 16 16 C 1.53041 * 109.53960 * 181.34864 * 15 13 2 17 17 C 1.53188 * 109.31323 * 298.64003 * 16 15 13 18 18 N 1.46923 * 108.78248 * 54.63155 * 17 16 15 19 19 C 1.34777 * 120.63273 * 126.36632 * 18 17 16 20 20 O 1.21283 * 119.99750 * 180.02562 * 19 18 17 21 21 C 1.50702 * 119.99928 * 0.28271 * 19 18 17 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 18 23 23 C 1.38214 * 120.01212 * 100.00030 * 22 21 19 24 24 C 1.38226 * 120.02449 * 179.97438 * 23 22 21 25 25 C 1.38271 * 120.05089 * 0.02562 * 24 23 22 26 26 C 1.38177 * 120.02567 * 0.02562 * 25 24 23 27 27 C 1.38437 * 120.00952 * 279.71925 * 22 21 19 28 28 F 1.35095 * 120.03011 * 0.02562 * 27 22 21 29 29 C 1.46929 * 118.73574 * 306.64745 * 18 17 16 30 30 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46807 * 300.00430 * 1 2 3 32 32 H 1.08994 * 109.47430 * 60.00069 * 1 2 3 33 33 H 0.97001 * 119.99968 * 265.00198 * 4 2 1 34 34 H 0.96996 * 120.00450 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46026 * 61.33277 * 15 13 2 36 36 H 1.09004 * 109.44899 * 301.36408 * 15 13 2 37 37 H 1.08997 * 109.50165 * 178.68366 * 16 15 13 38 38 H 1.09003 * 109.52225 * 58.59891 * 16 15 13 39 39 H 1.09001 * 109.58188 * 294.84012 * 17 16 15 40 40 H 1.09008 * 109.70486 * 174.49517 * 17 16 15 41 41 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 42 42 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 43 43 H 1.08001 * 119.99128 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.97340 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.98765 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.01446 * 179.97438 * 26 25 24 47 47 H 1.09003 * 109.58730 * 173.14184 * 29 18 17 48 48 H 1.09003 * 109.58586 * 293.56783 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8920 1.0402 -2.4244 7 6 2.6112 -0.6621 -3.5093 8 7 2.9241 -1.9392 -3.4502 9 14 2.7890 0.2695 -5.1186 10 1 2.3742 1.6817 -4.9214 11 1 4.2057 0.2265 -5.5616 12 1 1.9278 -0.3592 -6.1522 13 6 2.0400 -0.7212 1.2492 14 1 3.1300 -0.7219 1.2495 15 6 1.5302 -0.0002 2.4992 16 6 2.0674 -0.7010 3.7492 17 6 1.5548 -2.1442 3.7806 18 7 1.9162 -2.8022 2.5177 19 6 2.5925 -3.9680 2.5197 20 8 2.8854 -4.5009 1.4703 21 6 2.9796 -4.6123 3.8259 22 6 3.7152 -5.8989 3.5527 23 6 5.0953 -5.9336 3.6185 24 6 5.7702 -7.1137 3.3686 25 6 5.0657 -8.2606 3.0520 26 6 3.6859 -8.2280 2.9846 27 6 3.0084 -7.0479 3.2416 28 9 1.6591 -7.0164 3.1821 29 6 1.5319 -2.1618 1.2523 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2489 -1.6318 -1.1526 34 1 3.2474 -2.3965 -4.2421 35 1 0.4405 -0.0209 2.5114 36 1 1.8737 1.0343 2.4870 37 1 1.7231 -0.1732 4.6386 38 1 3.1572 -0.7025 3.7260 39 1 0.4709 -2.1445 3.8957 40 1 2.0108 -2.6782 4.6144 41 1 3.6253 -3.9366 4.3869 42 1 2.0820 -4.8232 4.4070 43 1 5.6467 -5.0383 3.8653 44 1 6.8487 -7.1398 3.4198 45 1 5.5940 -9.1820 2.8565 46 1 3.1359 -9.1238 2.7369 47 1 1.9749 -2.7059 0.4181 48 1 0.4461 -2.1636 1.1569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271679310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:03:00 Heat of formation + Delta-G solvation = -49.298625 kcal Electronic energy + Delta-G solvation = -29348.935436 eV Core-core repulsion = 25318.142654 eV Total energy + Delta-G solvation = -4030.792782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.92287 -40.29679 -39.05768 -37.71114 -35.40374 -33.25350 -32.75903 -31.82833 -30.65610 -29.86361 -28.30984 -27.46292 -25.17187 -24.30327 -23.15362 -22.91802 -22.05680 -21.10557 -19.30742 -18.53495 -17.64426 -17.36377 -16.89815 -16.59518 -16.13970 -15.57235 -15.35197 -15.10267 -14.76451 -14.55826 -14.31156 -14.06136 -13.79217 -13.64628 -13.39437 -13.24106 -13.07585 -12.90945 -12.74573 -12.41965 -12.28525 -12.23461 -11.83919 -11.65755 -11.51668 -11.22940 -11.04282 -10.96229 -10.83094 -10.58411 -10.41648 -10.19717 -10.17367 -9.84944 -9.65343 -9.48120 -9.05774 -8.85376 -8.73117 -8.38071 -6.88862 -5.67696 -2.97555 1.02500 1.09771 2.79681 3.08547 3.47713 3.51377 3.52584 3.55473 4.18842 4.36170 4.55496 4.59948 4.65341 4.77783 4.80095 4.91081 4.99630 5.04084 5.15889 5.22075 5.27524 5.32512 5.38565 5.45593 5.63550 5.68607 5.72364 5.80033 5.87208 5.90072 5.91504 5.99296 6.00988 6.10471 6.15876 6.16959 6.25642 6.28788 6.40247 6.46496 6.62176 6.69100 6.76834 6.82200 6.93322 7.16962 7.56986 7.76976 8.37004 8.49781 9.60617 10.19131 10.53005 11.54442 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.003262 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.587968 B = 8581.921676 C =10228.274465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.726 5.726 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.611 5.611 19 C 0.511 3.489 20 O -0.521 6.521 21 C -0.101 4.101 22 C -0.099 4.099 23 C -0.080 4.080 24 C -0.130 4.130 25 C -0.093 4.093 26 C -0.154 4.154 27 C 0.116 3.884 28 F -0.137 7.137 29 C 0.116 3.884 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.100 0.900 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -6.808 23.215 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.123 4.123 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.017 4.017 18 N -0.345 5.345 19 C 0.298 3.702 20 O -0.395 6.395 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.098 4.098 24 C -0.148 4.148 25 C -0.111 4.111 26 C -0.173 4.173 27 C 0.097 3.903 28 F -0.116 7.116 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.220 0.780 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.119 0.881 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.939 -6.983 22.483 23.561 hybrid contribution -0.130 0.251 -0.998 1.037 sum 0.809 -6.732 21.485 22.530 Atomic orbital electron populations 1.22575 0.99563 1.00858 0.99934 1.20165 0.91806 0.95239 0.85795 0.93365 1.42535 1.78116 1.10847 1.05316 1.19260 1.36597 0.93831 0.87372 0.91219 1.24751 1.02255 0.95930 0.97999 1.69688 1.50712 1.08586 1.28704 0.86165 0.77267 0.78746 0.84296 1.20627 1.21950 1.21943 1.21693 1.00912 0.94395 0.95333 0.90980 1.21622 1.00907 0.99179 0.93548 1.21921 1.01373 0.95094 0.98849 1.21740 1.00354 0.93722 0.85901 1.48156 1.56518 1.22139 1.07714 1.20366 0.78003 0.80911 0.90904 1.90796 1.53343 1.62187 1.33223 1.20630 1.01795 0.94561 0.97047 1.19362 0.94338 0.93208 1.03120 1.20909 0.92311 0.98480 0.98134 1.21159 1.00309 0.92694 1.00687 1.20996 0.93060 0.98830 0.98192 1.21116 0.95369 0.97239 1.03599 1.17501 0.76934 0.94576 1.01323 1.91488 1.29162 1.97175 1.93741 1.21717 0.99855 0.93239 0.85683 0.93319 0.94265 0.92907 0.78018 0.93559 0.91411 0.91660 0.90976 0.91585 0.91350 0.90231 0.87633 0.87936 0.85131 0.85313 0.85127 0.84808 0.88137 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.80 37.16 0.33 -2.69 16 2 C 0.18 3.57 2.72 -67.93 -0.18 3.39 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.73 -18.62 5.04 -53.43 -0.27 -18.89 16 5 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -29.27 13.06 55.49 0.72 -28.54 16 9 Si 0.90 22.98 29.55 -169.99 -5.02 17.96 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 C -0.10 -1.70 2.31 -90.72 -0.21 -1.91 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.11 -1.39 4.78 -26.69 -0.13 -1.52 16 16 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 17 C 0.11 1.04 6.34 -3.71 -0.02 1.01 16 18 N -0.61 -8.77 2.98 -173.02 -0.52 -9.28 16 19 C 0.51 8.10 7.69 -10.98 -0.08 8.02 16 20 O -0.52 -10.99 15.37 5.55 0.09 -10.90 16 21 C -0.10 -1.12 3.91 -29.03 -0.11 -1.23 16 22 C -0.10 -1.24 4.42 -104.56 -0.46 -1.70 16 23 C -0.08 -0.87 9.67 -39.59 -0.38 -1.25 16 24 C -0.13 -1.26 10.04 -39.57 -0.40 -1.66 16 25 C -0.09 -0.90 10.04 -39.59 -0.40 -1.29 16 26 C -0.15 -1.75 10.03 -39.51 -0.40 -2.14 16 27 C 0.12 1.55 7.14 -39.42 -0.28 1.27 16 28 F -0.14 -2.00 16.66 2.25 0.04 -1.96 16 29 C 0.12 2.02 5.21 -3.93 -0.02 2.00 16 30 H 0.05 0.88 6.32 -51.93 -0.33 0.55 16 31 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.38 10.71 6.17 -40.82 -0.25 10.46 16 34 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.07 0.79 6.50 -51.93 -0.34 0.45 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.57 5.94 -51.92 -0.31 0.26 16 41 H 0.11 0.86 7.56 -51.93 -0.39 0.47 16 42 H 0.10 0.96 7.73 -51.93 -0.40 0.56 16 43 H 0.13 1.14 8.04 -52.49 -0.42 0.71 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 47 H 0.10 2.20 5.59 -51.93 -0.29 1.91 16 48 H 0.07 1.16 6.16 -51.93 -0.32 0.84 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -35.44 382.30 -9.52 -44.96 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -7.16 Total: 9.50 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.16 Total: -8.59 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.06 Total: -56.72 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.44 -9.52 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271679310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.343 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds