Wall clock time and date at job start Sat Apr 11 2020 04:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47234 * 2 1 4 4 N 1.46501 * 109.47577 * 120.00107 * 2 1 3 5 5 C 1.36936 * 120.00005 * 275.00290 * 4 2 1 6 6 H 1.07997 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99878 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99922 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46951 * 90.00029 * 9 7 5 11 11 H 1.48493 * 109.47131 * 209.99875 * 9 7 5 12 12 H 1.48498 * 109.47336 * 330.00433 * 9 7 5 13 13 C 1.52998 * 109.47098 * 240.00317 * 2 1 3 14 14 H 1.08999 * 109.51403 * 65.09839 * 13 2 1 15 15 C 1.53294 * 109.51436 * 185.25250 * 13 2 1 16 16 N 1.47156 * 108.38594 * 172.22684 * 15 13 2 17 17 C 1.34774 * 120.98305 * 129.48528 * 16 15 13 18 18 O 1.21284 * 120.00091 * 354.49573 * 17 16 15 19 19 C 1.50698 * 120.00024 * 174.48901 * 17 16 15 20 20 C 1.52992 * 109.47254 * 308.56225 * 19 17 16 21 21 C 1.53006 * 109.46989 * 68.56091 * 19 17 16 22 22 C 1.53001 * 109.47265 * 188.55778 * 19 17 16 23 23 C 1.52995 * 109.47058 * 180.02562 * 22 19 17 24 24 F 1.39894 * 109.47459 * 300.00406 * 22 19 17 25 25 F 1.39902 * 109.46870 * 60.00329 * 22 19 17 26 26 C 1.47153 * 118.03168 * 309.46492 * 16 15 13 27 27 C 1.53283 * 108.38676 * 50.53558 * 26 16 15 28 28 O 1.42956 * 109.22644 * 307.69602 * 27 26 16 29 29 H 1.09005 * 109.46895 * 299.99519 * 1 2 3 30 30 H 1.08994 * 109.47315 * 59.99979 * 1 2 3 31 31 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99807 * 94.99814 * 4 2 1 33 33 H 0.97006 * 119.99795 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.68201 * 291.94837 * 15 13 2 35 35 H 1.09000 * 109.68465 * 52.49779 * 15 13 2 36 36 H 1.09002 * 109.47461 * 67.64951 * 20 19 17 37 37 H 1.09006 * 109.47280 * 187.65038 * 20 19 17 38 38 H 1.08999 * 109.47290 * 307.65025 * 20 19 17 39 39 H 1.09002 * 109.46883 * 71.84457 * 21 19 17 40 40 H 1.08993 * 109.46974 * 191.84633 * 21 19 17 41 41 H 1.08997 * 109.46976 * 311.84948 * 21 19 17 42 42 H 1.08996 * 109.47047 * 60.00497 * 23 22 19 43 43 H 1.09004 * 109.46949 * 180.02562 * 23 22 19 44 44 H 1.09000 * 109.47576 * 300.00121 * 23 22 19 45 45 H 1.09007 * 109.67670 * 170.26265 * 26 16 15 46 46 H 1.09000 * 109.68049 * 290.80931 * 26 16 15 47 47 H 1.09004 * 109.51579 * 187.77092 * 27 26 16 48 48 H 1.09007 * 109.51453 * 67.62133 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7906 0.2700 5.1182 10 1 1.5228 0.1797 5.8862 11 1 3.8947 -0.3239 5.9139 12 1 3.0964 1.6949 4.8334 13 6 2.0400 -0.7212 -1.2493 14 1 1.7535 -0.1578 -2.1373 15 6 3.5672 -0.8373 -1.1859 16 7 4.0141 -1.6930 -2.2965 17 6 4.9983 -1.2947 -3.1266 18 8 5.4610 -0.1780 -3.0269 19 6 5.5241 -2.2369 -4.1787 20 6 5.8951 -3.5713 -3.5288 21 6 4.4466 -2.4687 -5.2401 22 6 6.7641 -1.6272 -4.8356 23 6 7.2975 -2.5835 -5.9041 24 9 6.4249 -0.4070 -5.4299 25 9 7.7493 -1.4153 -3.8651 26 6 3.3549 -2.9966 -2.4737 27 6 1.8381 -2.7753 -2.4743 28 8 1.4705 -2.0311 -1.3105 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6318 1.1525 33 1 3.2480 -2.3964 4.2420 34 1 4.0149 0.1519 -1.2815 35 1 3.8623 -1.2841 -0.2365 36 1 4.9906 -4.0697 -3.1803 37 1 6.3997 -4.2035 -4.2595 38 1 6.5595 -3.3915 -2.6836 39 1 4.3322 -1.5687 -5.8442 40 1 4.7400 -3.3009 -5.8798 41 1 3.5002 -2.7015 -4.7521 42 1 6.5298 -2.7482 -6.6601 43 1 8.1812 -2.1493 -6.3718 44 1 7.5618 -3.5344 -5.4415 45 1 3.6620 -3.4374 -3.4222 46 1 3.6286 -3.6609 -1.6539 47 1 1.3294 -3.7394 -2.4657 48 1 1.5516 -2.2197 -3.3673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485649030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:04 Heat of formation + Delta-G solvation = -145.777770 kcal Electronic energy + Delta-G solvation = -31807.369658 eV Core-core repulsion = 27341.624001 eV Total energy + Delta-G solvation = -4465.745657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.98620 -46.94558 -40.74615 -38.55185 -36.42670 -35.37717 -34.46726 -32.29446 -30.77798 -29.88607 -28.39703 -27.92676 -27.67653 -25.21579 -24.22913 -23.49289 -22.80060 -20.79792 -19.66687 -19.39537 -17.48207 -17.44417 -17.15614 -17.01499 -16.13669 -16.05507 -15.51193 -15.36487 -14.99580 -14.79010 -14.36668 -14.24779 -14.00052 -13.60091 -13.56164 -13.32637 -13.30268 -13.22623 -13.19078 -12.90854 -12.65717 -12.50358 -12.27627 -12.14392 -12.04527 -11.87169 -11.66787 -11.49966 -11.31476 -11.18967 -10.85050 -10.79575 -10.77408 -10.44979 -10.26656 -10.01470 -9.86884 -9.58021 -9.53533 -8.91080 -8.36861 -6.91837 -5.73129 -3.01421 2.55336 2.79742 3.43959 3.46420 3.52060 3.53247 3.76917 3.94701 4.00846 4.10331 4.44414 4.58919 4.61673 4.62020 4.77151 4.84606 5.01107 5.05565 5.11319 5.20463 5.25533 5.28728 5.33059 5.35778 5.37685 5.46510 5.50446 5.60770 5.64138 5.69698 5.80539 5.81893 5.88139 6.02113 6.23217 6.36786 6.41352 6.57012 6.68411 6.80232 7.15383 7.35998 7.46016 7.73815 8.11510 8.45121 9.57500 10.13662 10.50751 11.49195 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.003393 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.824608 B = 8251.165458 C = 8942.707907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.718 5.718 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.086 3.914 16 N -0.606 5.606 17 C 0.524 3.476 18 O -0.522 6.522 19 C -0.125 4.125 20 C -0.165 4.165 21 C -0.155 4.155 22 C 0.313 3.687 23 C -0.198 4.198 24 F -0.190 7.190 25 F -0.192 7.192 26 C 0.050 3.950 27 C 0.046 3.954 28 O -0.358 6.358 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -7.191 -22.466 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.035 4.035 16 N -0.339 5.339 17 C 0.310 3.690 18 O -0.397 6.397 19 C -0.129 4.129 20 C -0.221 4.221 21 C -0.212 4.212 22 C 0.276 3.724 23 C -0.255 4.255 24 F -0.170 7.170 25 F -0.173 7.173 26 C -0.073 4.073 27 C -0.032 4.032 28 O -0.276 6.276 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.224 0.776 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.121 0.879 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.601 -6.481 -22.099 23.309 hybrid contribution 0.371 0.319 0.834 0.967 sum 3.972 -6.162 -21.265 22.493 Atomic orbital electron populations 1.22321 0.98432 1.01582 0.99572 1.20263 0.92847 0.94645 0.85098 0.92226 1.42405 1.77693 1.10936 1.04974 1.19244 1.36520 0.93841 0.87387 0.91196 1.24706 1.02176 0.95927 0.97935 1.69669 1.50856 1.08637 1.28749 0.86224 0.77212 0.78878 0.84086 1.21822 1.21870 1.20773 1.22919 0.91558 0.84058 0.99547 0.92731 1.22481 0.94992 0.96725 0.89344 1.48053 1.36204 1.19088 1.30584 1.19998 0.79803 0.87475 0.81741 1.90773 1.58092 1.20281 1.70566 1.21850 0.96220 0.97944 0.96926 1.22406 1.04278 0.93514 1.01951 1.22165 0.97629 1.03786 0.97662 1.20576 0.85318 0.81863 0.84602 1.22901 1.03834 1.00143 0.98641 1.93027 1.92688 1.47379 1.83947 1.93036 1.63594 1.95528 1.65116 1.23115 0.94440 0.85925 1.03805 1.22922 0.93229 0.97511 0.89548 1.88112 1.70635 1.27399 1.41477 0.92813 0.94885 0.92476 0.77635 0.93618 0.88518 0.88181 0.89130 0.90506 0.90765 0.90708 0.90258 0.89978 0.89004 0.89755 0.88868 0.87547 0.89795 0.87893 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.29 37.16 0.35 -2.61 16 2 C 0.18 3.64 2.80 -67.93 -0.19 3.45 16 3 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 4 N -0.72 -17.72 4.24 -53.43 -0.23 -17.94 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 9 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.08 1.34 2.57 -26.58 -0.07 1.27 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.09 1.54 5.83 -3.53 -0.02 1.52 16 16 N -0.61 -8.89 3.00 -172.28 -0.52 -9.41 16 17 C 0.52 8.06 6.24 -10.99 -0.07 7.99 16 18 O -0.52 -10.34 14.35 5.55 0.08 -10.26 16 19 C -0.13 -1.33 0.24 -155.66 -0.04 -1.37 16 20 C -0.16 -1.36 7.59 37.15 0.28 -1.07 16 21 C -0.16 -1.15 7.37 37.16 0.27 -0.87 16 22 C 0.31 3.68 1.16 -26.73 -0.03 3.65 16 23 C -0.20 -1.34 8.71 37.16 0.32 -1.02 16 24 F -0.19 -2.73 15.25 2.25 0.03 -2.70 16 25 F -0.19 -2.86 15.98 2.25 0.04 -2.82 16 26 C 0.05 0.54 4.14 -3.54 -0.01 0.53 16 27 C 0.05 0.53 6.96 37.30 0.26 0.78 16 28 O -0.36 -5.89 9.24 -35.23 -0.33 -6.21 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.11 7.56 -51.93 -0.39 0.71 16 32 H 0.39 10.30 7.07 -40.82 -0.29 10.01 16 33 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.10 1.88 7.06 -51.93 -0.37 1.51 16 35 H 0.10 2.10 6.92 -51.93 -0.36 1.74 16 36 H 0.09 0.63 4.51 -51.93 -0.23 0.40 16 37 H 0.08 0.41 6.05 -51.93 -0.31 0.10 16 38 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 39 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16 40 H 0.08 0.34 7.06 -51.93 -0.37 -0.03 16 41 H 0.08 0.56 5.28 -51.93 -0.27 0.28 16 42 H 0.09 0.44 6.71 -51.93 -0.35 0.09 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.47 6.27 -51.93 -0.33 0.15 16 45 H 0.11 0.80 2.72 -51.93 -0.14 0.66 16 46 H 0.08 0.96 8.04 -51.93 -0.42 0.55 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -34.68 368.17 -6.00 -40.67 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.14 Total: 7.70 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 0.81 Total: 5.11 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.02 Total: -54.57 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.25 Total: -16.47 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.68 -6.00 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485649030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.104 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds