Wall clock time and date at job start Sat Apr 11 2020 04:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 N 1.46500 * 109.47668 * 120.00423 * 2 1 3 5 5 C 1.36936 * 119.99556 * 275.00024 * 4 2 1 6 6 H 1.07996 * 120.00341 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99857 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99700 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00318 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46964 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47459 * 120.00254 * 9 7 5 12 12 H 1.48508 * 109.47148 * 240.00285 * 9 7 5 13 13 C 1.53001 * 109.46920 * 240.00442 * 2 1 3 14 14 H 1.09002 * 109.51566 * 185.00020 * 13 2 1 15 15 C 1.53291 * 109.51527 * 64.89698 * 13 2 1 16 16 N 1.47267 * 108.32852 * 187.76752 * 15 13 2 17 17 C 1.34770 * 120.95805 * 230.48509 * 16 15 13 18 18 O 1.21285 * 120.00412 * 355.04371 * 17 16 15 19 19 C 1.50707 * 120.00244 * 175.04091 * 17 16 15 20 20 C 1.52998 * 109.47065 * 300.56071 * 19 17 16 21 21 C 1.53004 * 109.46906 * 60.55420 * 19 17 16 22 22 C 1.52994 * 109.47394 * 180.55641 * 19 17 16 23 23 C 1.52999 * 109.47065 * 180.02562 * 22 19 17 24 24 F 1.39901 * 109.47375 * 300.00407 * 22 19 17 25 25 F 1.39901 * 109.46914 * 60.00022 * 22 19 17 26 26 C 1.47152 * 118.05954 * 50.50513 * 16 15 13 27 27 C 1.53296 * 108.38382 * 309.46802 * 26 16 15 28 28 O 1.42964 * 109.22198 * 52.30633 * 27 26 16 29 29 H 1.09000 * 109.47460 * 59.99911 * 1 2 3 30 30 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46767 * 299.99290 * 1 2 3 32 32 H 0.96998 * 120.00183 * 94.99725 * 4 2 1 33 33 H 0.97010 * 120.00085 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.68029 * 307.44339 * 15 13 2 35 35 H 1.09004 * 109.68481 * 68.00045 * 15 13 2 36 36 H 1.09006 * 109.47309 * 44.53905 * 20 19 17 37 37 H 1.09002 * 109.47606 * 164.53937 * 20 19 17 38 38 H 1.09004 * 109.47078 * 284.54453 * 20 19 17 39 39 H 1.09002 * 109.46597 * 68.84943 * 21 19 17 40 40 H 1.08991 * 109.47221 * 188.84727 * 21 19 17 41 41 H 1.08995 * 109.47536 * 308.85433 * 21 19 17 42 42 H 1.08998 * 109.46967 * 60.00341 * 23 22 19 43 43 H 1.08999 * 109.46822 * 180.02562 * 23 22 19 44 44 H 1.09004 * 109.47396 * 300.00075 * 23 22 19 45 45 H 1.09000 * 109.68245 * 189.74271 * 26 16 15 46 46 H 1.09005 * 109.68006 * 69.19439 * 26 16 15 47 47 H 1.08990 * 109.51465 * 292.37445 * 27 26 16 48 48 H 1.09001 * 109.55249 * 172.25067 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3756 6 1 1.8920 1.0402 2.4243 7 6 2.6116 -0.6620 3.5091 8 7 2.9237 -1.9393 3.4501 9 14 2.7894 0.2695 5.1184 10 1 2.3756 1.6820 4.9210 11 1 1.9285 -0.3592 6.1521 12 1 4.2062 0.2267 5.5613 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.7998 -1.2064 15 6 1.6327 0.0685 -2.4985 16 7 1.9686 -0.7365 -3.6851 17 6 2.6735 -0.2076 -4.7047 18 8 2.9636 0.9700 -4.6950 19 6 3.1016 -1.0794 -5.8571 20 6 3.9818 -2.2173 -5.3363 21 6 1.8642 -1.6642 -6.5412 22 6 3.8930 -0.2421 -6.8637 23 6 4.3270 -1.1271 -8.0339 24 9 3.0881 0.7984 -7.3399 25 9 5.0244 0.2926 -6.2381 26 6 1.5117 -2.1347 -3.7250 27 6 1.9250 -2.8159 -2.4154 28 8 1.4686 -2.0302 -1.3117 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2492 -1.6318 1.1525 33 1 3.2472 -2.3967 4.2421 34 1 0.5600 0.2612 -2.4775 35 1 2.1755 1.0133 -2.5288 36 1 3.5339 -2.6409 -4.4373 37 1 4.0654 -2.9908 -6.0997 38 1 4.9734 -1.8308 -5.1005 39 1 1.3186 -0.8679 -7.0475 40 1 2.1721 -2.4138 -7.2700 41 1 1.2203 -2.1273 -5.7935 42 1 3.4452 -1.5433 -8.5211 43 1 4.8912 -0.5306 -8.7507 44 1 4.9540 -1.9380 -7.6631 45 1 1.9743 -2.6482 -4.5679 46 1 0.4268 -2.1636 -3.8275 47 1 3.0108 -2.9022 -2.3768 48 1 1.4789 -3.8092 -2.3643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485649033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:06 Heat of formation + Delta-G solvation = -146.588150 kcal Electronic energy + Delta-G solvation = -31513.867783 eV Core-core repulsion = 27048.086985 eV Total energy + Delta-G solvation = -4465.780798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.07964 -47.03834 -40.91998 -38.62490 -36.55807 -35.40987 -34.53840 -32.51984 -30.83862 -29.98321 -28.58607 -27.97726 -27.27477 -25.25897 -24.81744 -23.47092 -22.79828 -20.93982 -19.67141 -19.51802 -17.55980 -17.53015 -17.14628 -17.08801 -16.16854 -16.10765 -15.67788 -15.53066 -15.34626 -14.66200 -14.58281 -14.29099 -14.10217 -13.68258 -13.60629 -13.39157 -13.32257 -13.27729 -13.22830 -12.90628 -12.75959 -12.62102 -12.48768 -12.24192 -12.17545 -12.03695 -11.74372 -11.68771 -11.33463 -11.15175 -10.95667 -10.85070 -10.72432 -10.52833 -10.27296 -10.04471 -9.85276 -9.71354 -9.62335 -8.89756 -8.54110 -6.93068 -5.73389 -3.02030 2.39047 2.61229 3.33456 3.45277 3.51197 3.53209 3.68546 3.88764 3.91475 4.02301 4.33908 4.52220 4.52936 4.56356 4.65913 4.76275 4.93071 4.99673 5.05058 5.10508 5.12737 5.17341 5.24157 5.29207 5.30011 5.36213 5.40558 5.57310 5.60087 5.63423 5.64170 5.76040 5.78759 5.96840 5.97879 6.18542 6.31804 6.45504 6.64951 6.82117 7.13786 7.17327 7.43448 7.73049 7.93859 8.44826 9.56907 10.14079 10.50829 11.49111 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002815 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.557329 B = 9943.720892 C =10157.132730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.607 5.607 17 C 0.525 3.475 18 O -0.520 6.520 19 C -0.125 4.125 20 C -0.161 4.161 21 C -0.163 4.163 22 C 0.313 3.687 23 C -0.197 4.197 24 F -0.191 7.191 25 F -0.190 7.190 26 C 0.050 3.950 27 C 0.044 3.956 28 O -0.356 6.356 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 -4.901 -25.886 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.039 4.039 16 N -0.341 5.341 17 C 0.311 3.689 18 O -0.395 6.395 19 C -0.129 4.129 20 C -0.218 4.218 21 C -0.220 4.220 22 C 0.276 3.724 23 C -0.254 4.254 24 F -0.172 7.172 25 F -0.171 7.171 26 C -0.073 4.073 27 C -0.035 4.035 28 O -0.274 6.274 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.091 -4.142 -25.586 25.942 hybrid contribution 0.341 0.322 0.764 0.896 sum -0.750 -3.820 -24.822 25.125 Atomic orbital electron populations 1.22412 0.98622 1.01600 0.99577 1.20196 0.92848 0.94634 0.84919 0.92273 1.42356 1.77856 1.10954 1.04894 1.19296 1.36408 0.93891 0.87312 0.91111 1.24736 1.02228 0.95970 0.98020 1.69692 1.50922 1.08621 1.28688 0.86133 0.77264 0.78825 0.84079 1.20544 1.21911 1.21933 1.22988 0.97634 0.82972 0.94709 0.91829 1.22545 1.02103 0.95768 0.83446 1.48035 1.54575 1.12683 1.18845 1.20038 0.78011 0.87917 0.82889 1.90778 1.54889 1.15885 1.77910 1.21854 0.98741 0.97448 0.94882 1.22283 1.00281 0.96286 1.02960 1.22354 0.95626 1.02169 1.01838 1.20580 0.78267 0.82931 0.90572 1.22876 1.04440 1.00869 0.97236 1.93024 1.73901 1.61378 1.88927 1.93037 1.52130 1.87869 1.84051 1.23113 1.01112 0.82332 1.00735 1.22955 0.99512 0.95319 0.85673 1.88114 1.67555 1.25751 1.45986 0.94673 0.92444 0.92866 0.77689 0.93639 0.89987 0.88191 0.89641 0.90189 0.90562 0.90795 0.90264 0.89355 0.88989 0.89731 0.88938 0.87251 0.90127 0.92780 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.06 37.16 0.34 -2.65 16 2 C 0.18 3.71 2.77 -67.93 -0.19 3.52 16 3 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 4 N -0.72 -18.25 5.10 -53.43 -0.27 -18.53 16 5 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 9 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 C 0.08 1.30 2.60 -26.58 -0.07 1.23 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.08 1.23 5.81 -3.47 -0.02 1.21 16 16 N -0.61 -7.69 3.00 -172.17 -0.52 -8.20 16 17 C 0.53 7.22 6.26 -10.98 -0.07 7.15 16 18 O -0.52 -9.39 14.33 5.55 0.08 -9.31 16 19 C -0.13 -1.18 0.24 -155.66 -0.04 -1.22 16 20 C -0.16 -1.16 7.23 37.16 0.27 -0.89 16 21 C -0.16 -1.04 7.43 37.16 0.28 -0.76 16 22 C 0.31 3.36 1.15 -26.73 -0.03 3.33 16 23 C -0.20 -1.19 8.72 37.16 0.32 -0.86 16 24 F -0.19 -2.55 15.47 2.25 0.03 -2.52 16 25 F -0.19 -2.63 15.41 2.25 0.03 -2.60 16 26 C 0.05 0.46 4.03 -3.53 -0.01 0.44 16 27 C 0.04 0.49 6.76 37.31 0.25 0.75 16 28 O -0.36 -5.82 9.24 -35.23 -0.33 -6.14 16 29 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 30 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.39 10.61 7.58 -40.82 -0.31 10.30 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.08 1.16 6.27 -51.92 -0.33 0.83 16 35 H 0.10 1.60 7.13 -51.93 -0.37 1.23 16 36 H 0.09 0.61 4.30 -51.93 -0.22 0.39 16 37 H 0.08 0.32 7.12 -51.93 -0.37 -0.05 16 38 H 0.08 0.65 7.42 -51.93 -0.39 0.27 16 39 H 0.07 0.55 7.57 -51.93 -0.39 0.16 16 40 H 0.08 0.28 6.77 -51.93 -0.35 -0.07 16 41 H 0.09 0.49 4.59 -51.93 -0.24 0.26 16 42 H 0.09 0.37 6.64 -51.93 -0.34 0.03 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.40 6.80 -51.93 -0.35 0.05 16 45 H 0.11 0.69 2.99 -51.93 -0.16 0.54 16 46 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 47 H 0.05 0.61 7.53 -51.93 -0.39 0.22 16 48 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -35.38 365.56 -5.98 -41.37 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.01 Total: 6.48 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 0.78 Total: 3.96 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.06 Total: -54.33 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.25 Total: -15.45 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.07 Total: -5.11 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.38 -5.98 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485649033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.222 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds