Wall clock time and date at job start Sat Apr 11 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48506 * 109.47243 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47145 * 120.00512 * 3 2 1 6 6 H 1.48501 * 109.47752 * 240.00594 * 3 2 1 7 7 C 1.38804 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00373 * 155.57519 * 7 2 1 9 9 N 1.36940 * 120.00246 * 335.57598 * 7 2 1 10 10 C 1.47350 * 121.29978 * 333.41541 * 9 7 2 11 11 C 1.52745 * 109.04386 * 230.17494 * 10 9 7 12 12 O 1.43138 * 109.81979 * 309.05663 * 11 10 9 13 13 C 1.42597 * 113.63386 * 61.54035 * 12 11 10 14 14 H 1.09003 * 108.96158 * 55.84768 * 13 12 11 15 15 C 1.52798 * 111.11507 * 176.38485 * 13 12 11 16 16 C 1.53364 * 108.81566 * 182.52962 * 15 13 12 17 17 N 1.46837 * 109.24880 * 306.16478 * 16 15 13 18 18 C 1.34780 * 120.40912 * 232.26853 * 17 16 15 19 19 O 1.21617 * 119.99849 * 175.00683 * 18 17 16 20 20 C 1.47102 * 120.00200 * 355.00557 * 18 17 16 21 21 C 1.32990 * 119.99943 * 187.32963 * 20 18 17 22 22 C 1.51267 * 120.85042 * 10.48112 * 21 20 18 23 23 C 1.53663 * 108.31388 * 128.61201 * 22 21 20 24 24 C 1.52964 * 109.31968 * 54.85766 * 23 22 21 25 25 C 1.52948 * 109.82150 * 296.27122 * 24 23 22 26 26 C 1.51268 * 120.84703 * 190.75185 * 21 20 18 27 27 C 1.47126 * 119.18088 * 52.25755 * 17 16 15 28 28 C 1.46866 * 121.30708 * 153.69878 * 9 7 2 29 29 H 1.09003 * 109.65304 * 247.64573 * 28 9 7 30 30 H 0.96996 * 119.99819 * 172.93946 * 1 2 3 31 31 H 1.09005 * 109.58555 * 350.03528 * 10 9 7 32 32 H 1.09001 * 109.58209 * 110.44080 * 10 9 7 33 33 H 1.09004 * 109.50155 * 188.87457 * 11 10 9 34 34 H 1.08997 * 109.21893 * 69.06814 * 11 10 9 35 35 H 1.08994 * 109.57557 * 302.33098 * 15 13 12 36 36 H 1.09000 * 109.57363 * 62.72904 * 15 13 12 37 37 H 1.08998 * 109.51103 * 66.10258 * 16 15 13 38 38 H 1.09007 * 109.50606 * 186.23752 * 16 15 13 39 39 H 1.08002 * 119.99570 * 7.33971 * 20 18 17 40 40 H 1.08997 * 109.62417 * 248.38608 * 22 21 20 41 41 H 1.09003 * 109.62981 * 8.95307 * 22 21 20 42 42 H 1.08996 * 109.62841 * 294.84075 * 23 22 21 43 43 H 1.08997 * 109.42041 * 174.74660 * 23 22 21 44 44 H 1.09005 * 109.41019 * 176.16578 * 24 23 22 45 45 H 1.08996 * 109.35441 * 56.34883 * 24 23 22 46 46 H 1.08999 * 109.48641 * 303.62589 * 25 24 23 47 47 H 1.09001 * 109.49940 * 183.58667 * 25 24 23 48 48 H 1.08989 * 109.63045 * 351.04579 * 26 21 20 49 49 H 1.09001 * 109.62074 * 111.42701 * 26 21 20 50 50 H 1.09000 * 109.73143 * 187.10376 * 27 17 16 51 51 H 1.08999 * 109.73413 * 66.43180 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1041 1.6964 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0178 -1.2438 -0.3873 9 7 1.4175 -2.3352 0.4893 10 6 0.3565 -2.2644 1.5093 11 6 0.6997 -3.2175 2.6525 12 8 1.0033 -4.5144 2.1285 13 6 2.1302 -4.5286 1.2549 14 1 2.9898 -4.1106 1.7788 15 6 2.4567 -5.9505 0.8007 16 6 3.7103 -5.9122 -0.0820 17 7 3.5072 -4.9470 -1.1698 18 6 3.7127 -5.3102 -2.4513 19 8 3.4555 -4.5344 -3.3519 20 6 4.2480 -6.6449 -2.7608 21 6 4.5879 -6.9520 -4.0093 22 6 4.6570 -5.8849 -5.0792 23 6 6.0213 -5.9896 -5.7783 24 6 6.2159 -7.4153 -6.2973 25 6 6.2591 -8.3936 -5.1224 26 6 4.9093 -8.3783 -4.3972 27 6 3.0763 -3.5786 -0.8435 28 6 1.8188 -3.6689 0.0232 29 1 1.0035 -4.1202 -0.5423 30 1 -0.4850 -0.8337 -0.1033 31 1 0.2856 -1.2465 1.8927 32 1 -0.5957 -2.5573 1.0669 33 1 -0.1492 -3.2907 3.3325 34 1 1.5647 -2.8330 3.1927 35 1 2.6424 -6.5786 1.6719 36 1 1.6199 -6.3526 0.2296 37 1 4.5687 -5.6095 0.5177 38 1 3.8899 -6.9018 -0.5023 39 1 4.3649 -7.3755 -1.9740 40 1 3.8580 -6.0409 -5.8040 41 1 4.5531 -4.9008 -4.6221 42 1 6.8147 -5.7489 -5.0707 43 1 6.0550 -5.2908 -6.6141 44 1 7.1522 -7.4742 -6.8524 45 1 5.3874 -7.6762 -6.9558 46 1 7.0468 -8.0960 -4.4302 47 1 6.4613 -9.3986 -5.4929 48 1 4.9677 -8.9970 -3.5018 49 1 4.1315 -8.7622 -5.0574 50 1 2.8523 -3.0346 -1.7611 51 1 3.8655 -3.0653 -0.2942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074188564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:03:22 Heat of formation + Delta-G solvation = -38.979502 kcal Electronic energy + Delta-G solvation = -30411.423157 eV Core-core repulsion = 26504.538150 eV Total energy + Delta-G solvation = -3906.885007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.33904 -39.08992 -37.95260 -36.11881 -34.98372 -32.92146 -31.83532 -31.37838 -31.08969 -29.94776 -27.66820 -26.53261 -24.98287 -23.79356 -23.11694 -22.49078 -21.72590 -21.05200 -19.80191 -19.43544 -18.08492 -17.30811 -17.23339 -15.87496 -15.63114 -15.45804 -15.04652 -14.92353 -14.64183 -14.55502 -14.17579 -13.92252 -13.75273 -13.55230 -13.44797 -13.25492 -12.92320 -12.81015 -12.74477 -12.62411 -12.32493 -12.00503 -11.87030 -11.55411 -11.26531 -11.13434 -11.05037 -10.98215 -10.79406 -10.65511 -10.55368 -10.44583 -10.31983 -10.09434 -9.92055 -9.46740 -9.24859 -9.10303 -8.94948 -8.41578 -8.29606 -6.95827 -6.08437 -3.29287 1.36647 3.17712 3.40598 3.49785 3.50627 3.69392 4.13807 4.43795 4.50674 4.52965 4.69102 4.70666 4.84699 4.95562 5.03372 5.13287 5.16305 5.21878 5.25023 5.32724 5.39502 5.41690 5.44185 5.52833 5.62010 5.65481 5.66684 5.74407 5.76903 5.82731 5.86939 5.89064 5.91189 5.97102 6.06763 6.11347 6.13030 6.19628 6.24460 6.33143 6.45439 6.54915 6.63581 6.73208 6.74916 6.91680 7.01950 7.67023 7.73376 7.89024 8.43737 8.49173 9.00664 9.76517 10.19638 11.17663 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003294 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.115937 B = 8499.306418 C =10071.990763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.021 4.021 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.353 4.353 8 H 0.064 0.936 9 N -0.595 5.595 10 C 0.120 3.880 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.076 3.924 14 H 0.053 0.947 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.608 5.608 18 C 0.547 3.453 19 O -0.535 6.535 20 C -0.232 4.232 21 C -0.023 4.023 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.093 4.093 27 C 0.127 3.873 28 C 0.139 3.861 29 H 0.035 0.965 30 H 0.270 0.730 31 H 0.088 0.912 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.102 0.898 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.428 -17.925 -4.107 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.223 4.223 3 Si 0.892 3.108 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.481 4.481 8 H 0.082 0.918 9 N -0.321 5.321 10 C -0.006 4.006 11 C -0.032 4.032 12 O -0.307 6.307 13 C 0.017 3.983 14 H 0.071 0.929 15 C -0.163 4.163 16 C -0.012 4.012 17 N -0.341 5.341 18 C 0.339 3.661 19 O -0.415 6.415 20 C -0.252 4.252 21 C -0.025 4.025 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.130 4.130 27 C 0.005 3.995 28 C 0.031 3.969 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.120 0.880 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.023 -15.966 -4.445 19.904 hybrid contribution 0.204 -1.588 0.069 1.602 sum 11.228 -17.553 -4.376 21.291 Atomic orbital electron populations 1.70771 1.06627 1.30520 1.47417 1.25842 0.96508 1.01408 0.98539 0.83563 0.74847 0.76119 0.76259 1.21032 1.22030 1.21816 1.19946 0.97382 0.87855 1.42932 0.91839 1.44104 1.44210 1.00449 1.43307 1.21527 0.90960 0.99293 0.88847 1.23076 0.99652 0.83908 0.96560 1.87747 1.49174 1.30012 1.63800 1.22455 0.88760 0.95081 0.92039 0.92909 1.21860 0.98106 0.96702 0.99647 1.21745 0.97423 0.93266 0.88744 1.48191 1.67132 1.13081 1.05685 1.18542 0.78224 0.87236 0.82124 1.90598 1.52062 1.54481 1.44374 1.22424 1.08364 0.97147 0.97307 1.22700 0.89733 0.95785 0.94281 1.21776 0.96596 1.01377 0.96534 1.21672 0.97445 0.96320 0.99974 1.21570 1.01658 0.95338 0.97532 1.21561 0.96735 0.99491 0.97568 1.20955 0.98114 0.92860 1.01036 1.21707 0.95997 0.80510 1.01274 1.21277 0.94980 0.88056 0.92551 0.94754 0.91947 0.89333 0.95687 0.89785 0.93753 0.90205 0.90856 0.91304 0.89251 0.85471 0.90714 0.85546 0.92096 0.91610 0.92086 0.91900 0.91748 0.91678 0.90924 0.89866 0.87969 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.25 12.41 55.49 0.69 -26.56 16 2 C -0.02 -0.58 4.74 -17.43 -0.08 -0.66 16 3 Si 1.06 25.09 29.98 -169.99 -5.10 20.00 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.35 -9.61 8.80 -15.06 -0.13 -9.75 16 8 H 0.06 1.71 6.31 -52.48 -0.33 1.38 16 9 N -0.59 -14.87 2.91 -164.63 -0.48 -15.35 16 10 C 0.12 2.81 4.85 -3.71 -0.02 2.80 16 11 C 0.05 0.90 6.94 37.03 0.26 1.15 16 12 O -0.39 -7.62 10.49 -35.23 -0.37 -7.99 16 13 C 0.08 1.39 2.48 -26.63 -0.07 1.33 16 14 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 15 C -0.12 -1.73 5.82 -26.65 -0.16 -1.88 16 16 C 0.11 1.37 6.29 -3.67 -0.02 1.34 16 17 N -0.61 -9.86 2.98 -174.09 -0.52 -10.38 16 18 C 0.55 8.99 7.50 -12.66 -0.09 8.90 16 19 O -0.53 -10.61 12.56 5.26 0.07 -10.55 16 20 C -0.23 -2.84 8.96 -37.81 -0.34 -3.18 16 21 C -0.02 -0.26 5.39 -100.61 -0.54 -0.80 16 22 C -0.13 -1.58 5.36 -27.26 -0.15 -1.72 16 23 C -0.12 -1.16 5.95 -26.41 -0.16 -1.32 16 24 C -0.12 -0.98 5.80 -26.78 -0.16 -1.14 16 25 C -0.12 -0.85 5.94 -26.64 -0.16 -1.01 16 26 C -0.09 -0.75 6.04 -27.48 -0.17 -0.92 16 27 C 0.13 2.55 4.49 -3.71 -0.02 2.53 16 28 C 0.14 3.00 3.03 -67.53 -0.20 2.80 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.27 8.17 6.62 -40.82 -0.27 7.90 16 31 H 0.09 2.26 6.47 -51.93 -0.34 1.93 16 32 H 0.03 0.62 7.76 -51.93 -0.40 0.22 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.83 5.35 -51.92 -0.28 0.55 16 39 H 0.13 1.20 5.80 -52.49 -0.30 0.90 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.13 2.00 4.67 -53.51 -0.25 1.75 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.50 7.92 -51.94 -0.41 0.09 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.10 2.39 6.78 -51.93 -0.35 2.03 16 51 H 0.07 1.47 7.38 -51.93 -0.38 1.08 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -31.99 378.20 -10.67 -42.66 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.45 Total: 4.00 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.20 Total: -1.53 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.31 Total: -52.29 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.30 Total: -18.53 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.10 Total: 20.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.99 -10.67 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074188564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.677 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds