Wall clock time and date at job start Sat Apr 11 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48506 * 109.47243 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47145 * 120.00512 * 3 2 1 6 6 H 1.48501 * 109.47752 * 240.00594 * 3 2 1 7 7 C 1.38804 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00373 * 155.57519 * 7 2 1 9 9 N 1.36940 * 120.00246 * 335.57598 * 7 2 1 10 10 C 1.47350 * 121.29978 * 333.41541 * 9 7 2 11 11 C 1.52745 * 109.04386 * 230.17494 * 10 9 7 12 12 O 1.43138 * 109.81979 * 309.05663 * 11 10 9 13 13 C 1.42597 * 113.63386 * 61.54035 * 12 11 10 14 14 H 1.09003 * 108.96158 * 55.84768 * 13 12 11 15 15 C 1.52798 * 111.11507 * 176.38485 * 13 12 11 16 16 C 1.53364 * 108.81566 * 182.52962 * 15 13 12 17 17 N 1.46837 * 109.24880 * 306.16478 * 16 15 13 18 18 C 1.34780 * 120.40912 * 232.26853 * 17 16 15 19 19 O 1.21617 * 119.99849 * 175.00683 * 18 17 16 20 20 C 1.47102 * 120.00200 * 355.00557 * 18 17 16 21 21 C 1.32990 * 119.99943 * 187.32963 * 20 18 17 22 22 C 1.51267 * 120.85042 * 10.48112 * 21 20 18 23 23 C 1.53663 * 108.31388 * 128.61201 * 22 21 20 24 24 C 1.52964 * 109.31968 * 54.85766 * 23 22 21 25 25 C 1.52948 * 109.82150 * 296.27122 * 24 23 22 26 26 C 1.51268 * 120.84703 * 190.75185 * 21 20 18 27 27 C 1.47126 * 119.18088 * 52.25755 * 17 16 15 28 28 C 1.46866 * 121.30708 * 153.69878 * 9 7 2 29 29 H 1.09003 * 109.65304 * 247.64573 * 28 9 7 30 30 H 0.96996 * 119.99819 * 172.93946 * 1 2 3 31 31 H 1.09005 * 109.58555 * 350.03528 * 10 9 7 32 32 H 1.09001 * 109.58209 * 110.44080 * 10 9 7 33 33 H 1.09004 * 109.50155 * 188.87457 * 11 10 9 34 34 H 1.08997 * 109.21893 * 69.06814 * 11 10 9 35 35 H 1.08994 * 109.57557 * 302.33098 * 15 13 12 36 36 H 1.09000 * 109.57363 * 62.72904 * 15 13 12 37 37 H 1.08998 * 109.51103 * 66.10258 * 16 15 13 38 38 H 1.09007 * 109.50606 * 186.23752 * 16 15 13 39 39 H 1.08002 * 119.99570 * 7.33971 * 20 18 17 40 40 H 1.08997 * 109.62417 * 248.38608 * 22 21 20 41 41 H 1.09003 * 109.62981 * 8.95307 * 22 21 20 42 42 H 1.08996 * 109.62841 * 294.84075 * 23 22 21 43 43 H 1.08997 * 109.42041 * 174.74660 * 23 22 21 44 44 H 1.09005 * 109.41019 * 176.16578 * 24 23 22 45 45 H 1.08996 * 109.35441 * 56.34883 * 24 23 22 46 46 H 1.08999 * 109.48641 * 303.62589 * 25 24 23 47 47 H 1.09001 * 109.49940 * 183.58667 * 25 24 23 48 48 H 1.08989 * 109.63045 * 351.04579 * 26 21 20 49 49 H 1.09001 * 109.62074 * 111.42701 * 26 21 20 50 50 H 1.09000 * 109.73143 * 187.10376 * 27 17 16 51 51 H 1.08999 * 109.73413 * 66.43180 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1041 1.6964 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0178 -1.2438 -0.3873 9 7 1.4175 -2.3352 0.4893 10 6 0.3565 -2.2644 1.5093 11 6 0.6997 -3.2175 2.6525 12 8 1.0033 -4.5144 2.1285 13 6 2.1302 -4.5286 1.2549 14 1 2.9898 -4.1106 1.7788 15 6 2.4567 -5.9505 0.8007 16 6 3.7103 -5.9122 -0.0820 17 7 3.5072 -4.9470 -1.1698 18 6 3.7127 -5.3102 -2.4513 19 8 3.4555 -4.5344 -3.3519 20 6 4.2480 -6.6449 -2.7608 21 6 4.5879 -6.9520 -4.0093 22 6 4.6570 -5.8849 -5.0792 23 6 6.0213 -5.9896 -5.7783 24 6 6.2159 -7.4153 -6.2973 25 6 6.2591 -8.3936 -5.1224 26 6 4.9093 -8.3783 -4.3972 27 6 3.0763 -3.5786 -0.8435 28 6 1.8188 -3.6689 0.0232 29 1 1.0035 -4.1202 -0.5423 30 1 -0.4850 -0.8337 -0.1033 31 1 0.2856 -1.2465 1.8927 32 1 -0.5957 -2.5573 1.0669 33 1 -0.1492 -3.2907 3.3325 34 1 1.5647 -2.8330 3.1927 35 1 2.6424 -6.5786 1.6719 36 1 1.6199 -6.3526 0.2296 37 1 4.5687 -5.6095 0.5177 38 1 3.8899 -6.9018 -0.5023 39 1 4.3649 -7.3755 -1.9740 40 1 3.8580 -6.0409 -5.8040 41 1 4.5531 -4.9008 -4.6221 42 1 6.8147 -5.7489 -5.0707 43 1 6.0550 -5.2908 -6.6141 44 1 7.1522 -7.4742 -6.8524 45 1 5.3874 -7.6762 -6.9558 46 1 7.0468 -8.0960 -4.4302 47 1 6.4613 -9.3986 -5.4929 48 1 4.9677 -8.9970 -3.5018 49 1 4.1315 -8.7622 -5.0574 50 1 2.8523 -3.0346 -1.7611 51 1 3.8655 -3.0653 -0.2942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074188564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:03:21 Heat of formation + Delta-G solvation = -58.659760 kcal Electronic energy + Delta-G solvation = -30412.276557 eV Core-core repulsion = 26504.538150 eV Total energy + Delta-G solvation = -3907.738407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67815 -40.47855 -38.95161 -37.48030 -36.86792 -33.99817 -33.28941 -33.03278 -31.87778 -31.52445 -29.17480 -27.92867 -26.43950 -25.40906 -24.10528 -23.81041 -23.05616 -22.15731 -21.46388 -20.56576 -19.36249 -19.02095 -18.50610 -17.31449 -17.02481 -16.80274 -16.57917 -16.13019 -16.06799 -15.77804 -15.47836 -15.17428 -15.11239 -15.00536 -14.70510 -14.63220 -14.35727 -14.11201 -13.80802 -13.65461 -13.45122 -13.29595 -13.12399 -12.79728 -12.71006 -12.53874 -12.51547 -12.18153 -12.02049 -11.96727 -11.96053 -11.77579 -11.68460 -11.56759 -11.25457 -11.15941 -10.91697 -10.46704 -10.38703 -9.98527 -9.62790 -9.04529 -8.29359 -5.49349 0.36608 1.54634 1.61650 1.80266 1.89142 2.22489 2.58309 2.71107 3.12269 3.31929 3.50173 3.70098 3.74822 3.85365 3.96957 4.00656 4.05637 4.06057 4.11248 4.20686 4.23045 4.28503 4.32061 4.37300 4.44993 4.49366 4.50368 4.62041 4.63180 4.67106 4.75289 4.81598 4.85364 4.91370 4.97974 5.00480 5.05479 5.07692 5.13426 5.18194 5.19392 5.21815 5.30780 5.44357 5.46411 5.59995 5.70088 5.74254 6.16370 6.27957 6.45100 6.88354 7.18327 7.64640 8.08669 8.92526 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003294 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.115937 B = 8499.306418 C =10071.990763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.075 4.075 3 Si 1.114 2.886 4 H -0.291 1.291 5 H -0.272 1.272 6 H -0.281 1.281 7 C -0.351 4.351 8 H 0.061 0.939 9 N -0.614 5.614 10 C 0.123 3.877 11 C 0.058 3.942 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.056 0.944 15 C -0.116 4.116 16 C 0.109 3.891 17 N -0.610 5.610 18 C 0.535 3.465 19 O -0.584 6.584 20 C -0.240 4.240 21 C -0.013 4.013 22 C -0.133 4.133 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.114 4.114 26 C -0.089 4.089 27 C 0.144 3.856 28 C 0.135 3.865 29 H 0.001 0.999 30 H 0.251 0.749 31 H 0.063 0.937 32 H 0.001 0.999 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.055 0.945 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.090 -21.596 -3.071 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.271 4.271 3 Si 0.938 3.062 4 H -0.217 1.217 5 H -0.198 1.198 6 H -0.207 1.207 7 C -0.481 4.481 8 H 0.079 0.921 9 N -0.340 5.340 10 C -0.003 4.003 11 C -0.020 4.020 12 O -0.308 6.308 13 C 0.022 3.978 14 H 0.074 0.926 15 C -0.154 4.154 16 C -0.012 4.012 17 N -0.342 5.342 18 C 0.329 3.671 19 O -0.467 6.467 20 C -0.260 4.260 21 C -0.015 4.015 22 C -0.170 4.170 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.126 4.126 27 C 0.020 3.980 28 C 0.028 3.972 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.019 0.981 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.149 0.851 39 H 0.185 0.815 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.074 0.926 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.712 -19.703 -3.381 24.242 hybrid contribution -0.648 -0.451 -0.392 0.882 sum 13.064 -20.154 -3.773 24.312 Atomic orbital electron populations 1.70902 1.07604 1.29323 1.50506 1.27236 0.96580 1.04842 0.98465 0.82886 0.73890 0.72081 0.77376 1.21706 1.19810 1.20685 1.20198 0.97244 0.88829 1.41780 0.92083 1.44406 1.44295 1.01323 1.43959 1.21450 0.89767 0.99166 0.89895 1.22973 1.01201 0.82933 0.94903 1.87759 1.49791 1.29546 1.63744 1.22533 0.88257 0.97323 0.89705 0.92580 1.21910 0.98557 0.93801 1.01168 1.22127 0.97245 0.94197 0.87641 1.48275 1.66825 1.11995 1.07089 1.19441 0.77620 0.88588 0.81468 1.90611 1.54050 1.56292 1.45797 1.22450 1.09552 0.95172 0.98849 1.23034 0.87835 0.97263 0.93373 1.21671 0.98007 1.00194 0.97100 1.21642 0.95574 0.98281 0.99596 1.21572 1.02456 0.93726 0.98157 1.21579 0.96141 1.00367 0.97019 1.21054 0.98780 0.90283 1.02435 1.21159 0.95231 0.83060 0.98539 1.21440 0.94322 0.86944 0.94470 0.98145 0.93912 0.91838 0.98085 0.86692 0.92931 0.86425 0.91648 0.89181 0.85053 0.81545 0.91394 0.89403 0.92438 0.91898 0.90716 0.91710 0.91655 0.89372 0.88454 0.88988 0.92625 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 12.41 21.65 0.27 -58.78 16 2 C -0.08 -4.37 4.74 84.86 0.40 -3.97 16 3 Si 1.11 52.07 29.98 68.60 2.06 54.13 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.35 -20.03 8.80 84.03 0.74 -19.29 16 8 H 0.06 3.45 6.31 -2.91 -0.02 3.43 16 9 N -0.61 -32.15 2.91 -674.76 -1.97 -34.11 16 10 C 0.12 6.04 4.85 86.13 0.42 6.46 16 11 C 0.06 2.21 6.94 71.90 0.50 2.70 16 12 O -0.39 -14.70 10.49 -148.98 -1.56 -16.26 16 13 C 0.08 2.86 2.48 30.66 0.08 2.94 16 14 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 15 C -0.12 -2.84 5.82 30.65 0.18 -2.66 16 16 C 0.11 2.29 6.29 86.44 0.54 2.83 16 17 N -0.61 -19.62 2.98 -822.94 -2.45 -22.07 16 18 C 0.53 17.80 7.50 86.57 0.65 18.45 16 19 O -0.58 -24.92 12.56 -4.08 -0.05 -24.97 16 20 C -0.24 -5.34 8.96 23.43 0.21 -5.13 16 21 C -0.01 -0.27 5.39 -17.26 -0.09 -0.36 16 22 C -0.13 -3.39 5.36 30.25 0.16 -3.22 16 23 C -0.11 -2.20 5.95 30.81 0.18 -2.01 16 24 C -0.12 -1.63 5.80 30.57 0.18 -1.45 16 25 C -0.11 -1.21 5.94 30.66 0.18 -1.03 16 26 C -0.09 -1.09 6.04 30.11 0.18 -0.90 16 27 C 0.14 6.06 4.49 86.26 0.39 6.45 16 28 C 0.14 6.07 3.03 45.05 0.14 6.21 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.25 16.27 6.62 -92.71 -0.61 15.66 16 31 H 0.06 3.41 6.47 -2.38 -0.02 3.40 16 32 H 0.00 0.06 7.76 -2.39 -0.02 0.04 16 33 H 0.12 3.68 8.14 -2.38 -0.02 3.66 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.13 1.71 5.35 -2.38 -0.01 1.70 16 39 H 0.17 2.27 5.80 -2.91 -0.02 2.26 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 3.01 4.67 -27.39 -0.13 2.88 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.10 0.79 7.92 -2.39 -0.02 0.77 16 49 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.06 2.83 6.78 -2.39 -0.02 2.82 16 51 H 0.07 2.89 7.38 -2.39 -0.02 2.87 16 Total: -1.00 -77.50 378.20 2.28 -75.22 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.95 Total: 20.85 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.03 Total: 6.00 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.15 Total: -114.96 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -1.61 Total: -41.23 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.06 Total: 54.13 kcal Total: -77.50 2.28 -75.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074188564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.560 kcal (2) G-P(sol) polarization free energy of solvation -77.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds