Wall clock time and date at job start Sat Apr 11 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00420 * 2 1 4 4 H 1.48501 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47470 * 300.00010 * 3 2 1 6 6 H 1.48508 * 109.47260 * 60.00166 * 3 2 1 7 7 C 1.37880 * 119.99134 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99254 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00573 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52578 * 299.92164 * 9 7 2 11 11 C 1.53040 * 109.49926 * 179.83421 * 9 7 2 12 12 C 1.53042 * 109.53860 * 178.68682 * 11 9 7 13 13 C 1.53190 * 109.31365 * 61.36539 * 12 11 9 14 14 N 1.46923 * 108.77542 * 305.36420 * 13 12 11 15 15 C 1.34784 * 120.63415 * 233.88314 * 14 13 12 16 16 O 1.21341 * 120.00242 * 176.92648 * 15 14 13 17 17 C 1.49455 * 119.99587 * 356.93211 * 15 14 13 18 18 O 1.21344 * 120.00254 * 78.80158 * 17 15 14 19 19 N 1.34775 * 119.99676 * 258.79808 * 17 15 14 20 20 C 1.46497 * 120.00132 * 187.75200 * 19 17 15 21 21 C 1.52997 * 117.49684 * 16.14422 * 20 19 17 22 22 C 1.52999 * 60.00391 * 252.51278 * 21 20 19 23 23 C 1.46510 * 120.00031 * 7.75084 * 19 17 15 24 24 C 1.54266 * 110.02877 * 55.25304 * 23 19 17 25 25 C 1.54972 * 104.15482 * 217.13402 * 24 23 19 26 26 C 1.54887 * 102.77803 * 37.88988 * 25 24 23 27 27 C 1.53869 * 110.02998 * 298.03494 * 23 19 17 28 28 C 1.46927 * 118.73966 * 53.60969 * 14 13 12 29 29 H 0.97005 * 119.99818 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46272 * 298.70171 * 11 9 7 31 31 H 1.08999 * 109.45951 * 58.66357 * 11 9 7 32 32 H 1.09000 * 109.49954 * 181.32169 * 12 11 9 33 33 H 1.09007 * 109.49453 * 301.37907 * 12 11 9 34 34 H 1.09004 * 109.58694 * 185.58097 * 13 12 11 35 35 H 1.08996 * 109.58671 * 65.15396 * 13 12 11 36 36 H 1.08998 * 115.55470 * 161.86093 * 20 19 17 37 37 H 1.09003 * 117.50346 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49858 * 145.02163 * 21 20 19 39 39 H 1.08998 * 117.49921 * 252.51325 * 22 21 20 40 40 H 1.08996 * 117.51471 * 107.47845 * 22 21 20 41 41 H 1.08999 * 110.01225 * 176.64425 * 23 19 17 42 42 H 1.08998 * 110.49051 * 335.78301 * 24 23 19 43 43 H 1.09003 * 110.48501 * 98.42791 * 24 23 19 44 44 H 1.08996 * 110.71972 * 279.57507 * 25 24 23 45 45 H 1.09001 * 110.91725 * 156.30039 * 25 24 23 46 46 H 1.08998 * 110.48424 * 203.40108 * 26 25 24 47 47 H 1.08998 * 110.48419 * 80.75937 * 26 25 24 48 48 H 1.09004 * 110.02968 * 238.56751 * 27 23 19 49 49 H 1.08999 * 110.03751 * 359.97438 * 27 23 19 50 50 H 1.09004 * 109.58095 * 66.17710 * 28 14 13 51 51 H 1.08996 * 109.58651 * 186.45821 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0043 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6245 -2.5582 0.8907 11 6 2.2447 -3.6629 -0.0030 12 6 1.4807 -4.9886 0.0301 13 6 0.6028 -5.0987 -1.2205 14 7 -0.2559 -3.9093 -1.3018 15 6 -1.5931 -4.0341 -1.4157 16 8 -2.2961 -3.0451 -1.4258 17 6 -2.2099 -5.3906 -1.5294 18 8 -2.3581 -6.0749 -0.5383 19 7 -2.6017 -5.8539 -2.7329 20 6 -3.3577 -7.1053 -2.8254 21 6 -3.9961 -7.6414 -1.5424 22 6 -2.7701 -8.3383 -2.1358 23 6 -2.2714 -5.1061 -3.9487 24 6 -0.7485 -4.8735 -4.0286 25 6 -0.6133 -3.4516 -4.6300 26 6 -1.7814 -2.6846 -3.9619 27 6 -2.9281 -3.7152 -3.9065 28 6 0.3703 -2.5811 -1.2504 29 1 -0.4850 0.8401 -0.0004 30 1 2.8540 -3.6175 -0.9057 31 1 2.8888 -3.5930 0.8735 32 1 2.1893 -5.8165 0.0512 33 1 0.8527 -5.0245 0.9204 34 1 -0.0170 -5.9930 -1.1543 35 1 1.2348 -5.1545 -2.1068 36 1 -3.8976 -7.2606 -3.7595 37 1 -3.8540 -7.0628 -0.6296 38 1 -4.9564 -8.1493 -1.6323 39 1 -2.9238 -9.3047 -2.6160 40 1 -1.8209 -8.2184 -1.6137 41 1 -2.6123 -5.6535 -4.8275 42 1 -0.3041 -4.9107 -3.0341 43 1 -0.2838 -5.6111 -4.6830 44 1 -0.7373 -3.4774 -5.7126 45 1 0.3447 -3.0056 -4.3629 46 1 -2.0695 -1.8254 -4.5676 47 1 -1.5042 -2.3681 -2.9564 48 1 -3.5869 -3.5871 -4.7655 49 1 -3.4928 -3.5966 -2.9818 50 1 0.9833 -2.4316 -2.1392 51 1 -0.4029 -1.8141 -1.2065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118436708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:11 Heat of formation + Delta-G solvation = -11.508510 kcal Electronic energy + Delta-G solvation = -32474.018490 eV Core-core repulsion = 28568.324715 eV Total energy + Delta-G solvation = -3905.693775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43648 -39.01320 -37.72274 -36.90016 -36.06462 -33.50799 -33.12216 -31.91047 -29.94600 -28.47682 -27.37042 -26.26890 -25.10445 -23.85610 -22.42498 -22.00591 -21.49675 -20.76276 -20.47658 -19.25337 -18.29042 -17.33699 -16.75643 -16.27328 -16.13566 -15.48510 -15.29379 -14.72940 -14.64165 -14.42682 -14.13982 -13.81056 -13.79276 -13.58333 -13.26802 -13.11961 -12.71107 -12.65108 -12.23716 -12.06164 -11.78589 -11.68577 -11.46277 -11.10244 -11.02320 -10.97976 -10.91101 -10.82753 -10.73762 -10.67206 -10.45949 -10.38946 -10.28748 -10.22998 -9.96548 -9.87682 -9.18235 -9.16724 -8.79262 -8.48677 -8.45595 -7.88103 -6.04326 -4.12834 2.27189 2.42556 3.04425 3.27658 3.36524 3.39121 3.62315 3.83782 4.37398 4.42029 4.58869 4.72941 4.77146 4.92564 5.00215 5.01955 5.21439 5.26515 5.31290 5.40262 5.48785 5.57326 5.58800 5.66152 5.68067 5.71456 5.87161 5.89939 5.93414 5.96319 6.12235 6.15160 6.16769 6.25533 6.31737 6.43651 6.47809 6.53655 6.60649 6.69033 6.76657 6.86529 6.92715 7.02131 7.10405 7.18168 7.54315 7.79916 7.88271 7.97146 8.04311 8.30127 8.49522 8.91361 9.53113 11.01027 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.004398 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.429348 B = 6364.884156 C = 7010.814288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.038 3.962 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.132 4.132 13 C 0.103 3.897 14 N -0.584 5.584 15 C 0.510 3.490 16 O -0.498 6.498 17 C 0.517 3.483 18 O -0.514 6.514 19 N -0.568 5.568 20 C 0.067 3.933 21 C -0.191 4.191 22 C -0.185 4.185 23 C 0.136 3.864 24 C -0.165 4.165 25 C -0.118 4.118 26 C -0.147 4.147 27 C -0.146 4.146 28 C 0.113 3.887 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.050 0.950 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -14.024 -10.388 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.170 4.170 13 C -0.020 4.020 14 N -0.318 5.318 15 C 0.292 3.708 16 O -0.373 6.373 17 C 0.302 3.698 18 O -0.390 6.390 19 N -0.300 5.300 20 C -0.037 4.037 21 C -0.228 4.228 22 C -0.223 4.223 23 C 0.033 3.967 24 C -0.203 4.203 25 C -0.156 4.156 26 C -0.184 4.184 27 C -0.184 4.184 28 C -0.007 4.007 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.128 0.872 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.068 0.932 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.278 -13.698 -9.871 17.418 hybrid contribution 0.369 0.749 -0.196 0.858 sum -3.909 -12.949 -10.067 16.862 Atomic orbital electron populations 1.69882 1.05707 1.26791 1.49373 1.25041 0.94875 0.99233 0.94786 0.86549 0.80079 0.83808 0.77659 1.19790 1.20971 1.21010 1.21099 0.92969 0.89961 1.51760 0.92237 1.18998 0.92685 0.92440 0.94006 0.95102 1.21637 0.98532 0.93880 1.00754 1.21931 0.98532 0.99241 0.97335 1.21756 0.93788 0.87471 0.99014 1.48587 1.04215 1.09695 1.69259 1.19803 0.83599 0.88709 0.78692 1.90726 1.60439 1.36982 1.49194 1.20744 0.78796 0.87068 0.83202 1.90622 1.54726 1.56656 1.36965 1.47579 1.53839 1.22452 1.06144 1.21762 0.99674 0.83864 0.98383 1.23770 0.96375 1.03199 0.99496 1.23249 0.99158 0.95665 1.04248 1.22023 0.95801 0.92991 0.85907 1.23422 0.94574 0.98102 1.04171 1.22414 0.99791 0.94367 0.99018 1.22912 0.93972 0.97075 1.04412 1.22836 0.99006 0.93026 1.03534 1.22464 0.98766 0.80408 0.99019 0.92654 0.93078 0.92792 0.91991 0.91747 0.91231 0.91216 0.85256 0.84842 0.89099 0.88623 0.88437 0.88729 0.88565 0.91293 0.92081 0.90996 0.92171 0.87243 0.91784 0.89131 0.93217 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 11.39 55.43 0.63 -24.07 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.53 8.56 -34.44 -0.29 -13.82 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.90 2.25 -91.65 -0.21 0.69 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 13 C 0.10 1.64 4.66 -3.71 -0.02 1.62 16 14 N -0.58 -11.09 2.09 -173.27 -0.36 -11.46 16 15 C 0.51 10.05 3.88 -11.58 -0.04 10.01 16 16 O -0.50 -11.24 11.58 5.50 0.06 -11.18 16 17 C 0.52 9.02 4.67 -11.58 -0.05 8.97 16 18 O -0.51 -9.73 12.41 5.50 0.07 -9.66 16 19 N -0.57 -7.88 2.78 -157.82 -0.44 -8.32 16 20 C 0.07 0.77 6.57 -67.93 -0.45 0.32 16 21 C -0.19 -2.33 9.62 -26.73 -0.26 -2.59 16 22 C -0.18 -2.04 9.87 -26.73 -0.26 -2.30 16 23 C 0.14 1.69 3.37 -66.81 -0.23 1.46 16 24 C -0.16 -2.08 5.95 -25.03 -0.15 -2.23 16 25 C -0.12 -1.57 6.91 -24.69 -0.17 -1.74 16 26 C -0.15 -2.31 6.04 -25.07 -0.15 -2.46 16 27 C -0.15 -2.07 5.63 -25.62 -0.14 -2.22 16 28 C 0.11 2.51 4.51 -3.71 -0.02 2.49 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 34 H 0.07 1.07 6.05 -51.93 -0.31 0.76 16 35 H 0.07 0.98 7.39 -51.93 -0.38 0.60 16 36 H 0.13 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.13 2.08 5.27 -51.99 -0.27 1.81 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.26 7.56 -51.93 -0.39 0.87 16 41 H 0.09 0.91 7.88 -51.93 -0.41 0.50 16 42 H 0.10 1.38 1.71 -51.93 -0.09 1.29 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.11 2.15 3.27 -51.93 -0.17 1.98 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.56 5.59 -51.93 -0.29 1.27 16 50 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 51 H 0.13 3.28 4.70 -51.93 -0.24 3.03 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -29.20 369.35 -10.34 -39.54 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.02 Total: 8.72 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.83 Total: -4.79 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.17 Total: -43.85 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.13 Total: -20.84 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.20 -10.34 -39.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118436708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.033 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds