Wall clock time and date at job start Sat Apr 11 2020 04:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00420 * 2 1 4 4 H 1.48501 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47470 * 300.00010 * 3 2 1 6 6 H 1.48508 * 109.47260 * 60.00166 * 3 2 1 7 7 C 1.37880 * 119.99134 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99254 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00573 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52578 * 299.92164 * 9 7 2 11 11 C 1.53040 * 109.49926 * 179.83421 * 9 7 2 12 12 C 1.53042 * 109.53860 * 178.68682 * 11 9 7 13 13 C 1.53190 * 109.31365 * 61.36539 * 12 11 9 14 14 N 1.46923 * 108.77542 * 305.36420 * 13 12 11 15 15 C 1.34784 * 120.63415 * 233.88314 * 14 13 12 16 16 O 1.21341 * 120.00242 * 176.92648 * 15 14 13 17 17 C 1.49455 * 119.99587 * 356.93211 * 15 14 13 18 18 O 1.21344 * 120.00254 * 78.80158 * 17 15 14 19 19 N 1.34775 * 119.99676 * 258.79808 * 17 15 14 20 20 C 1.46497 * 120.00132 * 187.75200 * 19 17 15 21 21 C 1.52997 * 117.49684 * 16.14422 * 20 19 17 22 22 C 1.52999 * 60.00391 * 252.51278 * 21 20 19 23 23 C 1.46510 * 120.00031 * 7.75084 * 19 17 15 24 24 C 1.54266 * 110.02877 * 55.25304 * 23 19 17 25 25 C 1.54972 * 104.15482 * 217.13402 * 24 23 19 26 26 C 1.54887 * 102.77803 * 37.88988 * 25 24 23 27 27 C 1.53869 * 110.02998 * 298.03494 * 23 19 17 28 28 C 1.46927 * 118.73966 * 53.60969 * 14 13 12 29 29 H 0.97005 * 119.99818 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46272 * 298.70171 * 11 9 7 31 31 H 1.08999 * 109.45951 * 58.66357 * 11 9 7 32 32 H 1.09000 * 109.49954 * 181.32169 * 12 11 9 33 33 H 1.09007 * 109.49453 * 301.37907 * 12 11 9 34 34 H 1.09004 * 109.58694 * 185.58097 * 13 12 11 35 35 H 1.08996 * 109.58671 * 65.15396 * 13 12 11 36 36 H 1.08998 * 115.55470 * 161.86093 * 20 19 17 37 37 H 1.09003 * 117.50346 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49858 * 145.02163 * 21 20 19 39 39 H 1.08998 * 117.49921 * 252.51325 * 22 21 20 40 40 H 1.08996 * 117.51471 * 107.47845 * 22 21 20 41 41 H 1.08999 * 110.01225 * 176.64425 * 23 19 17 42 42 H 1.08998 * 110.49051 * 335.78301 * 24 23 19 43 43 H 1.09003 * 110.48501 * 98.42791 * 24 23 19 44 44 H 1.08996 * 110.71972 * 279.57507 * 25 24 23 45 45 H 1.09001 * 110.91725 * 156.30039 * 25 24 23 46 46 H 1.08998 * 110.48424 * 203.40108 * 26 25 24 47 47 H 1.08998 * 110.48419 * 80.75937 * 26 25 24 48 48 H 1.09004 * 110.02968 * 238.56751 * 27 23 19 49 49 H 1.08999 * 110.03751 * 359.97438 * 27 23 19 50 50 H 1.09004 * 109.58095 * 66.17710 * 28 14 13 51 51 H 1.08996 * 109.58651 * 186.45821 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0043 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6245 -2.5582 0.8907 11 6 2.2447 -3.6629 -0.0030 12 6 1.4807 -4.9886 0.0301 13 6 0.6028 -5.0987 -1.2205 14 7 -0.2559 -3.9093 -1.3018 15 6 -1.5931 -4.0341 -1.4157 16 8 -2.2961 -3.0451 -1.4258 17 6 -2.2099 -5.3906 -1.5294 18 8 -2.3581 -6.0749 -0.5383 19 7 -2.6017 -5.8539 -2.7329 20 6 -3.3577 -7.1053 -2.8254 21 6 -3.9961 -7.6414 -1.5424 22 6 -2.7701 -8.3383 -2.1358 23 6 -2.2714 -5.1061 -3.9487 24 6 -0.7485 -4.8735 -4.0286 25 6 -0.6133 -3.4516 -4.6300 26 6 -1.7814 -2.6846 -3.9619 27 6 -2.9281 -3.7152 -3.9065 28 6 0.3703 -2.5811 -1.2504 29 1 -0.4850 0.8401 -0.0004 30 1 2.8540 -3.6175 -0.9057 31 1 2.8888 -3.5930 0.8735 32 1 2.1893 -5.8165 0.0512 33 1 0.8527 -5.0245 0.9204 34 1 -0.0170 -5.9930 -1.1543 35 1 1.2348 -5.1545 -2.1068 36 1 -3.8976 -7.2606 -3.7595 37 1 -3.8540 -7.0628 -0.6296 38 1 -4.9564 -8.1493 -1.6323 39 1 -2.9238 -9.3047 -2.6160 40 1 -1.8209 -8.2184 -1.6137 41 1 -2.6123 -5.6535 -4.8275 42 1 -0.3041 -4.9107 -3.0341 43 1 -0.2838 -5.6111 -4.6830 44 1 -0.7373 -3.4774 -5.7126 45 1 0.3447 -3.0056 -4.3629 46 1 -2.0695 -1.8254 -4.5676 47 1 -1.5042 -2.3681 -2.9564 48 1 -3.5869 -3.5871 -4.7655 49 1 -3.4928 -3.5966 -2.9818 50 1 0.9833 -2.4316 -2.1392 51 1 -0.4029 -1.8141 -1.2065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118436708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:10 Heat of formation + Delta-G solvation = -27.546001 kcal Electronic energy + Delta-G solvation = -32474.713928 eV Core-core repulsion = 28568.324715 eV Total energy + Delta-G solvation = -3906.389213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.74871 -40.38138 -38.95064 -38.42396 -37.18145 -35.36733 -34.23904 -33.57603 -31.67979 -29.56931 -28.48596 -27.84416 -26.85144 -25.24343 -23.60217 -23.32006 -22.75106 -21.86280 -21.64895 -20.82221 -19.66292 -18.68897 -18.31896 -17.87133 -17.49108 -16.69114 -16.59553 -16.48004 -15.87593 -15.70537 -15.32104 -15.31672 -15.18839 -14.96347 -14.62899 -14.37535 -14.30330 -14.17353 -13.64223 -13.32639 -13.22290 -12.91702 -12.84205 -12.66479 -12.54394 -12.36699 -12.24455 -12.11214 -11.94730 -11.93196 -11.90110 -11.82864 -11.67863 -11.37583 -11.26020 -11.15075 -11.05846 -10.93782 -10.53202 -10.25506 -9.55701 -9.48915 -8.10375 -6.26798 0.91152 1.15085 1.40292 1.42914 1.54077 1.58591 2.30647 2.43242 2.91607 3.11936 3.19223 3.57631 3.68733 3.85951 3.89680 3.98731 4.05219 4.08954 4.13181 4.24000 4.40148 4.48662 4.50957 4.55827 4.59826 4.61265 4.67448 4.72069 4.78659 4.80407 4.85543 4.97174 5.02279 5.03392 5.07205 5.17053 5.20013 5.22232 5.29311 5.31131 5.34371 5.39993 5.46857 5.59254 5.65092 5.66679 5.88785 5.97581 6.01283 6.30574 6.38741 6.71785 6.84087 6.96702 7.43335 8.93258 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.004398 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.429348 B = 6364.884156 C = 7010.814288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.033 3.967 10 H -0.020 1.020 11 C -0.102 4.102 12 C -0.126 4.126 13 C 0.103 3.897 14 N -0.582 5.582 15 C 0.504 3.496 16 O -0.538 6.538 17 C 0.520 3.480 18 O -0.537 6.537 19 N -0.556 5.556 20 C 0.064 3.936 21 C -0.208 4.208 22 C -0.170 4.170 23 C 0.136 3.864 24 C -0.164 4.164 25 C -0.110 4.110 26 C -0.156 4.156 27 C -0.142 4.142 28 C 0.135 3.865 29 H 0.259 0.741 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.173 0.827 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -16.981 -13.530 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.569 4.569 8 H 0.082 0.918 9 C 0.014 3.986 10 H -0.002 1.002 11 C -0.140 4.140 12 C -0.164 4.164 13 C -0.019 4.019 14 N -0.314 5.314 15 C 0.287 3.713 16 O -0.416 6.416 17 C 0.303 3.697 18 O -0.416 6.416 19 N -0.286 5.286 20 C -0.038 4.038 21 C -0.246 4.246 22 C -0.208 4.208 23 C 0.034 3.966 24 C -0.202 4.202 25 C -0.148 4.148 26 C -0.193 4.193 27 C -0.180 4.180 28 C 0.014 3.986 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.190 0.810 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.093 0.907 41 H 0.160 0.840 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.304 -16.699 -13.036 21.440 hybrid contribution 0.024 1.699 0.826 1.889 sum -3.280 -15.000 -12.209 19.617 Atomic orbital electron populations 1.70082 1.07346 1.27148 1.50667 1.25833 0.95486 1.02694 0.94587 0.85550 0.79372 0.79669 0.77349 1.18419 1.20667 1.21311 1.21487 0.93306 0.91147 1.51005 0.91813 1.18968 0.93203 0.93950 0.92497 1.00165 1.21509 0.97621 0.93421 1.01453 1.21901 0.98808 0.99029 0.96693 1.21981 0.93679 0.86275 0.99924 1.48493 1.04603 1.09435 1.68908 1.20357 0.83501 0.89614 0.77836 1.90715 1.61426 1.38785 1.50688 1.20251 0.79233 0.85804 0.84378 1.90646 1.55991 1.56838 1.38075 1.47642 1.52667 1.23156 1.05179 1.22273 0.99447 0.82490 0.99606 1.23676 0.98386 1.04048 0.98452 1.23273 0.97370 0.96856 1.03348 1.22272 0.95663 0.92173 0.86538 1.23427 0.94767 0.98314 1.03725 1.22365 0.97580 0.94311 1.00496 1.22849 0.96157 0.98087 1.02218 1.22767 0.98498 0.94026 1.02742 1.21814 0.97198 0.81474 0.98149 0.93166 0.91451 0.92901 0.87712 0.94059 0.90288 0.88223 0.80951 0.88873 0.86561 0.85175 0.90659 0.84018 0.90613 0.87832 0.89102 0.92685 0.92495 0.91555 0.89111 0.92844 0.92911 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.57 11.39 21.45 0.24 -54.32 16 2 C 0.01 0.75 5.30 84.66 0.45 1.20 16 3 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.53 -28.59 8.56 25.60 0.22 -28.37 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.65 2.25 -11.46 -0.03 1.62 16 10 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 11 C -0.10 -3.93 5.11 30.62 0.16 -3.77 16 12 C -0.13 -4.04 6.08 30.67 0.19 -3.85 16 13 C 0.10 3.17 4.66 86.36 0.40 3.58 16 14 N -0.58 -22.88 2.09 -820.47 -1.72 -24.60 16 15 C 0.50 20.84 3.88 87.27 0.34 21.18 16 16 O -0.54 -26.39 11.58 -3.22 -0.04 -26.43 16 17 C 0.52 18.27 4.67 87.27 0.41 18.68 16 18 O -0.54 -20.93 12.41 -3.23 -0.04 -20.97 16 19 N -0.56 -14.22 2.78 -771.59 -2.15 -16.37 16 20 C 0.06 1.23 6.57 44.99 0.30 1.53 16 21 C -0.21 -4.69 9.62 30.59 0.29 -4.40 16 22 C -0.17 -3.19 9.87 30.60 0.30 -2.88 16 23 C 0.14 2.91 3.37 45.71 0.15 3.06 16 24 C -0.16 -3.63 5.95 31.70 0.19 -3.44 16 25 C -0.11 -2.72 6.91 31.91 0.22 -2.50 16 26 C -0.16 -5.00 6.04 31.67 0.19 -4.81 16 27 C -0.14 -3.91 5.63 31.32 0.18 -3.73 16 28 C 0.13 6.35 4.51 86.36 0.39 6.74 16 29 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 30 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 2.33 6.05 -2.38 -0.01 2.32 16 35 H 0.10 2.51 7.39 -2.39 -0.02 2.49 16 36 H 0.17 1.88 8.05 -2.39 -0.02 1.86 16 37 H 0.09 2.96 5.27 -3.43 -0.02 2.95 16 38 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.79 7.56 -2.39 -0.02 1.77 16 41 H 0.14 1.82 7.88 -2.39 -0.02 1.80 16 42 H 0.08 2.02 1.71 -2.39 0.00 2.01 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 1.54 8.08 -2.39 -0.02 1.52 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.07 2.80 3.27 -2.39 -0.01 2.79 16 48 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 49 H 0.05 1.90 5.59 -2.39 -0.01 1.89 16 50 H 0.05 2.39 8.08 -2.39 -0.02 2.37 16 51 H 0.08 4.78 4.70 -2.39 -0.01 4.76 16 Total: -1.00 -72.14 369.35 3.61 -68.53 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.93 Total: 28.73 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 4.35 Total: -0.17 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -3.62 Total: -95.29 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.08 Total: -47.40 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.14 3.61 -68.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118436708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.983 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds