Wall clock time and date at job start Sat Apr 11 2020 04:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99899 * 2 1 4 4 C 1.50703 * 109.46749 * 293.95277 * 3 2 1 5 5 H 1.07994 * 120.00370 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99615 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00149 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99794 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47296 * 89.99981 * 8 6 4 10 10 H 1.48505 * 109.47072 * 209.99655 * 8 6 4 11 11 H 1.48493 * 109.47498 * 329.99679 * 8 6 4 12 12 C 1.46898 * 111.00344 * 123.95240 * 2 1 3 13 13 C 1.53006 * 109.46819 * 66.04432 * 12 2 1 14 14 H 1.08998 * 109.47349 * 305.00492 * 13 12 2 15 15 O 1.42903 * 109.46882 * 65.00457 * 13 12 2 16 16 C 1.52999 * 109.46791 * 185.00096 * 13 12 2 17 17 N 1.46505 * 109.47120 * 180.02562 * 16 13 12 18 18 C 1.39934 * 120.00166 * 180.02562 * 17 16 13 19 19 C 1.38877 * 120.19469 * 359.97438 * 18 17 16 20 20 C 1.37887 * 120.27116 * 179.59239 * 19 18 17 21 21 C 1.39275 * 120.33968 * 0.37297 * 20 19 18 22 22 C 1.38858 * 118.99980 * 0.13227 * 21 20 19 23 23 C 1.37718 * 120.85791 * 359.65138 * 22 21 20 24 24 C 1.51657 * 107.05580 * 179.45216 * 22 21 20 25 25 C 1.54708 * 101.93069 * 344.48793 * 24 22 21 26 26 C 1.52995 * 110.74734 * 267.01428 * 25 24 22 27 27 C 1.53005 * 110.90247 * 143.73706 * 25 24 22 28 28 O 1.36271 * 129.78991 * 180.56812 * 21 20 19 29 29 H 1.08996 * 109.47574 * 296.04494 * 1 2 3 30 30 H 1.08994 * 109.46974 * 56.05059 * 1 2 3 31 31 H 1.09004 * 109.46928 * 176.04588 * 1 2 3 32 32 H 1.08996 * 109.47106 * 53.95217 * 3 2 1 33 33 H 1.08999 * 109.47036 * 173.95087 * 3 2 1 34 34 H 0.97002 * 120.00562 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47261 * 306.05252 * 12 2 1 36 36 H 1.08998 * 109.47373 * 186.04646 * 12 2 1 37 37 H 0.96702 * 114.00010 * 59.99655 * 15 13 12 38 38 H 1.09000 * 109.47280 * 60.00790 * 16 13 12 39 39 H 1.08998 * 109.47498 * 300.00305 * 16 13 12 40 40 H 0.97004 * 119.99631 * 0.02562 * 17 16 13 41 41 H 1.08002 * 119.86737 * 359.87605 * 19 18 17 42 42 H 1.08002 * 119.83263 * 180.34922 * 20 19 18 43 43 H 1.07998 * 120.04296 * 180.30304 * 23 22 21 44 44 H 1.08992 * 110.94270 * 226.32477 * 24 22 21 45 45 H 1.09007 * 110.93267 * 102.64343 * 24 22 21 46 46 H 1.08996 * 109.47205 * 174.82476 * 26 25 24 47 47 H 1.09000 * 109.47012 * 294.82532 * 26 25 24 48 48 H 1.09004 * 109.46872 * 54.82286 * 26 25 24 49 49 H 1.08999 * 109.47569 * 305.08389 * 27 25 24 50 50 H 1.08996 * 109.46975 * 65.08578 * 27 25 24 51 51 H 1.09004 * 109.46579 * 185.08533 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 1.7143 3.9390 -2.6618 8 14 2.9998 4.2761 -0.2309 9 1 4.4523 4.0637 -0.4558 10 1 2.6917 5.7260 -0.3226 11 1 2.6293 3.7756 1.1171 12 6 1.9955 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2956 -2.7696 -0.1800 16 6 2.0700 -3.0198 2.2131 17 7 1.7220 -4.4339 2.0528 18 6 2.0256 -5.3486 3.0674 19 6 2.6571 -4.9204 4.2278 20 6 2.9494 -5.8188 5.2321 21 6 2.6213 -7.1648 5.0893 22 6 1.9995 -7.5860 3.9214 23 6 1.7017 -6.6914 2.9175 24 6 1.7820 -9.0816 4.0476 25 6 2.7171 -9.4424 5.2261 26 6 4.0930 -9.8731 4.7140 27 6 2.0986 -10.5367 6.0984 28 8 2.8081 -8.2041 5.9507 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3445 0.1083 34 1 1.9888 4.8551 -2.8239 35 1 1.5611 -0.3873 2.0628 36 1 3.0798 -0.6610 1.1756 37 1 3.2602 -2.7166 -0.1360 38 1 1.5634 -2.6179 3.0905 39 1 3.1483 -2.9235 2.3402 40 1 1.2812 -4.7361 1.2432 41 1 2.9163 -3.8786 4.3460 42 1 3.4355 -5.4771 6.1339 43 1 1.2135 -7.0325 2.0166 44 1 2.0861 -9.5976 3.1370 45 1 0.7434 -9.3049 4.2919 46 1 4.7616 -10.0336 5.5597 47 1 3.9960 -10.7989 4.1468 48 1 4.5015 -9.0938 4.0705 49 1 1.1077 -10.2232 6.4265 50 1 2.0158 -11.4577 5.5214 51 1 2.7320 -10.7088 6.9687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819457421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:00 Heat of formation + Delta-G solvation = -72.522643 kcal Electronic energy + Delta-G solvation = -28106.820378 eV Core-core repulsion = 24198.480832 eV Total energy + Delta-G solvation = -3908.339546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -42.13808 -39.94397 -38.93953 -37.25468 -35.44898 -34.61556 -34.60479 -32.29951 -31.77697 -30.16622 -29.05867 -28.35696 -27.44699 -27.11849 -25.23250 -23.38054 -22.75122 -22.04408 -21.73949 -21.25996 -19.03829 -18.25115 -18.00786 -17.60703 -17.18682 -16.80957 -16.56567 -16.35757 -16.05515 -15.66315 -15.45086 -15.18552 -14.98654 -14.69986 -14.54611 -14.43021 -14.37240 -14.08073 -13.80390 -13.69267 -13.49994 -13.34415 -13.23355 -13.00504 -12.92671 -12.87330 -12.63285 -12.52987 -12.40847 -12.34712 -11.97189 -11.91810 -11.83286 -11.68858 -11.52808 -11.48547 -10.84916 -10.78285 -10.35387 -9.76255 -8.97325 -8.27983 -8.01773 -6.31800 0.38463 0.63292 1.35031 1.36664 1.47000 2.29598 2.34384 2.48685 2.85721 3.05042 3.19771 3.49998 3.59896 3.64606 3.86083 3.89723 3.99901 4.00851 4.09588 4.19971 4.27880 4.37824 4.42349 4.50953 4.58936 4.63525 4.65206 4.67211 4.68757 4.73527 4.75324 4.84766 4.88953 4.89801 4.93304 5.02636 5.07697 5.08171 5.17648 5.24152 5.27966 5.30430 5.38298 5.52964 5.54188 5.65407 5.97480 6.23850 6.34097 6.48604 6.65734 6.75052 6.82832 6.94394 7.31823 8.88793 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.001713 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.483241 B =16344.442115 C =16705.108813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.540 5.540 3 C 0.171 3.829 4 C -0.518 4.518 5 H 0.034 0.966 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.249 1.249 12 C 0.022 3.978 13 C 0.116 3.884 14 H 0.097 0.903 15 O -0.561 6.561 16 C 0.104 3.896 17 N -0.737 5.737 18 C 0.191 3.809 19 C -0.174 4.174 20 C -0.100 4.100 21 C 0.022 3.978 22 C -0.131 4.131 23 C -0.157 4.157 24 C -0.099 4.099 25 C 0.093 3.907 26 C -0.159 4.159 27 C -0.138 4.138 28 O -0.322 6.322 29 H 0.022 0.978 30 H 0.044 0.956 31 H 0.076 0.924 32 H -0.012 1.012 33 H 0.031 0.969 34 H 0.266 0.734 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.383 0.617 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.405 0.595 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.047 0.953 49 H 0.062 0.938 50 H 0.100 0.900 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -29.603 19.461 35.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.044 3.956 4 C -0.556 4.556 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.173 1.173 12 C -0.107 4.107 13 C 0.055 3.945 14 H 0.115 0.885 15 O -0.367 6.367 16 C -0.022 4.022 17 N -0.368 5.368 18 C 0.088 3.912 19 C -0.197 4.197 20 C -0.119 4.119 21 C -0.024 4.024 22 C -0.133 4.133 23 C -0.179 4.179 24 C -0.136 4.136 25 C 0.055 3.945 26 C -0.217 4.217 27 C -0.195 4.195 28 O -0.238 6.238 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.006 0.994 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.232 0.768 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.241 0.759 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.085 0.915 47 H 0.114 0.886 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.119 0.881 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.339 -29.596 19.024 35.261 hybrid contribution 0.347 1.485 0.463 1.594 sum 2.686 -28.111 19.487 34.310 Atomic orbital electron populations 1.22221 0.87839 1.01106 0.99750 1.61724 1.07979 1.14470 1.42201 1.19955 0.95212 0.85867 0.94530 1.21291 1.34908 0.97517 1.01927 0.94728 1.25893 0.97074 0.98452 0.97750 1.70057 1.48658 1.13906 1.26397 0.85673 0.79382 0.77535 0.80056 1.18898 1.20917 1.17300 1.22837 1.01207 0.94400 0.92218 1.21960 0.97875 0.89907 0.84710 0.88525 1.86576 1.24546 1.83741 1.41816 1.21926 1.00940 0.81191 0.98102 1.44455 1.67226 1.05721 1.19431 1.17739 0.95141 0.89182 0.89185 1.20504 1.05527 1.00279 0.93344 1.20189 1.01805 0.89641 1.00266 1.19486 1.01701 0.90149 0.91081 1.20734 1.00632 0.96819 0.95080 1.19855 1.06979 0.90836 1.00270 1.21969 1.01232 0.90638 0.99767 1.22961 0.96153 0.84096 0.91246 1.22183 0.95206 1.02464 1.01812 1.21859 1.00894 0.96762 0.99990 1.86835 1.89125 1.14097 1.33764 0.95990 0.93706 0.90574 0.99399 0.95119 0.92463 0.93519 0.89894 0.76822 0.90741 0.90956 0.75935 0.84270 0.84984 0.84861 0.87615 0.88331 0.91471 0.88615 0.93421 0.91870 0.88121 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.14 127.69 1.17 2.62 16 2 N -0.54 -21.24 4.70 -927.04 -4.36 -25.60 16 3 C 0.17 8.00 3.79 85.56 0.32 8.32 16 4 C -0.52 -29.99 9.01 25.60 0.23 -29.76 16 5 H 0.03 2.26 7.37 -2.91 -0.02 2.24 16 6 C 0.01 0.31 5.47 84.66 0.46 0.78 16 7 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 8 Si 0.95 43.48 27.47 68.60 1.88 45.37 16 9 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 12 C 0.02 0.62 4.60 86.31 0.40 1.02 16 13 C 0.12 2.60 3.01 30.60 0.09 2.69 16 14 H 0.10 2.30 6.34 -2.39 -0.02 2.29 16 15 O -0.56 -14.29 13.03 -148.98 -1.94 -16.23 16 16 C 0.10 1.80 4.58 86.38 0.40 2.19 16 17 N -0.74 -13.39 5.64 -339.18 -1.91 -15.30 16 18 C 0.19 3.79 6.66 38.17 0.25 4.04 16 19 C -0.17 -3.41 9.30 22.34 0.21 -3.20 16 20 C -0.10 -2.08 10.06 22.44 0.23 -1.85 16 21 C 0.02 0.48 6.95 22.67 0.16 0.64 16 22 C -0.13 -2.56 6.26 -19.53 -0.12 -2.68 16 23 C -0.16 -3.01 9.89 22.32 0.22 -2.79 16 24 C -0.10 -1.35 6.18 30.74 0.19 -1.16 16 25 C 0.09 1.32 1.26 -10.21 -0.01 1.31 16 26 C -0.16 -1.90 8.85 71.98 0.64 -1.26 16 27 C -0.14 -1.29 8.96 71.98 0.65 -0.64 16 28 O -0.32 -6.96 10.53 -96.65 -1.02 -7.98 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 1.97 6.76 -2.39 -0.02 1.95 16 31 H 0.08 2.38 6.37 -2.39 -0.02 2.36 16 32 H -0.01 -0.54 7.18 -2.39 -0.02 -0.56 16 33 H 0.03 1.39 7.36 -2.39 -0.02 1.37 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.08 2.15 7.93 -2.39 -0.02 2.14 16 37 H 0.38 7.73 9.05 -74.06 -0.67 7.06 16 38 H 0.07 1.21 7.96 -2.39 -0.02 1.19 16 39 H 0.07 1.14 7.96 -2.39 -0.02 1.12 16 40 H 0.40 7.29 8.37 -92.71 -0.78 6.52 16 41 H 0.14 2.30 6.74 -2.91 -0.02 2.28 16 42 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.11 1.07 7.92 -2.39 -0.02 1.05 16 45 H 0.10 1.16 7.91 -2.38 -0.02 1.14 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.05 0.72 8.13 -2.38 -0.02 0.70 16 49 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 50 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 51 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -72.31 404.74 -2.14 -74.45 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.57 Total: 24.32 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 5.47 Total: -19.76 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -5.97 Total: -100.17 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -2.96 Total: -24.21 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -72.31 -2.14 -74.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819457421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.928 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds