Wall clock time and date at job start Sat Apr 11 2020 04:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48504 * 109.46984 * 269.99800 * 3 2 1 5 5 H 1.48498 * 109.47183 * 29.99838 * 3 2 1 6 6 H 1.48496 * 109.47445 * 149.99965 * 3 2 1 7 7 C 1.38816 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00219 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64840 * 179.97438 * 9 7 2 11 11 C 1.54321 * 107.27045 * 178.97283 * 10 9 7 12 12 H 1.09006 * 110.72175 * 96.34599 * 11 10 9 13 13 N 1.46507 * 110.72122 * 219.44033 * 11 10 9 14 14 C 1.34775 * 119.99901 * 273.54526 * 13 11 10 15 15 O 1.21279 * 120.00300 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99773 * 179.97438 * 14 13 11 17 17 C 1.53002 * 109.46966 * 300.00122 * 16 14 13 18 18 C 1.52997 * 109.46817 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.47127 * 60.00361 * 18 17 16 20 20 C 1.52999 * 109.46626 * 299.99539 * 19 18 17 21 21 C 1.52997 * 109.47592 * 300.00035 * 20 19 18 22 22 C 1.52996 * 109.47165 * 60.00300 * 21 20 19 23 23 C 1.52997 * 109.47232 * 300.00239 * 18 17 16 24 24 C 1.52997 * 109.47084 * 60.00361 * 16 14 13 25 25 C 1.52996 * 109.47130 * 180.02562 * 16 14 13 26 26 C 1.55161 * 102.94551 * 337.80498 * 11 10 9 27 27 H 1.08996 * 111.00381 * 153.57349 * 26 11 10 28 28 O 1.42898 * 110.99943 * 277.43149 * 26 11 10 29 29 C 1.47426 * 125.64957 * 0.03246 * 9 7 2 30 30 H 0.96996 * 120.00120 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.88700 * 59.55097 * 10 9 7 32 32 H 1.09006 * 109.88141 * 298.38304 * 10 9 7 33 33 H 0.96992 * 119.99596 * 93.54440 * 13 11 10 34 34 H 1.09002 * 109.47070 * 60.00090 * 17 16 14 35 35 H 1.08996 * 109.47407 * 299.99690 * 17 16 14 36 36 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 38 38 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47140 * 300.00346 * 21 20 19 41 41 H 1.09001 * 109.47375 * 180.02562 * 21 20 19 42 42 H 1.08992 * 109.47534 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47140 * 180.02562 * 23 18 17 44 44 H 1.09001 * 109.47230 * 299.99295 * 23 18 17 45 45 H 1.08998 * 109.47171 * 59.99308 * 24 16 14 46 46 H 1.09002 * 109.47045 * 299.99967 * 24 16 14 47 47 H 1.09000 * 109.47380 * 59.99418 * 25 16 14 48 48 H 1.09001 * 109.46993 * 300.00313 * 25 16 14 49 49 H 0.96703 * 113.99723 * 179.97438 * 28 26 11 50 50 H 1.09002 * 110.36404 * 322.93537 * 29 9 7 51 51 H 1.08997 * 110.36373 * 85.14434 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.9318 -3.7275 0.0005 11 6 0.7784 -4.7524 0.0270 12 1 0.5484 -5.1003 -0.9802 13 7 1.1081 -5.8814 0.9006 14 6 1.8003 -6.9303 0.4139 15 8 2.1508 -6.9395 -0.7471 16 6 2.1399 -8.0913 1.3127 17 6 2.9918 -7.5975 2.4838 18 6 3.3360 -8.7761 3.3966 19 6 4.1187 -9.8243 2.6030 20 6 3.2668 -10.3180 1.4319 21 6 1.9766 -10.9423 1.9672 22 6 1.1940 -9.8942 2.7608 23 6 2.0458 -9.4004 3.9319 24 6 0.8500 -8.7162 1.8480 25 6 2.9233 -9.1387 0.5189 26 6 -0.4020 -3.9324 0.6115 27 1 -1.3591 -4.3328 0.2775 28 8 -0.3375 -3.8877 2.0383 29 6 -0.1415 -2.5332 -0.0007 30 1 -0.4850 0.8400 0.0004 31 1 2.5578 -3.8511 0.8841 32 1 2.5286 -3.8643 -0.9013 33 1 0.8281 -5.8738 1.8292 34 1 2.4340 -6.8511 3.0494 35 1 3.9107 -7.1524 2.1024 36 1 3.9424 -8.4243 4.2312 37 1 5.0378 -9.3795 2.2217 38 1 4.3643 -10.6637 3.2534 39 1 3.8242 -11.0650 0.8668 40 1 2.2219 -11.7819 2.6175 41 1 1.3700 -11.2945 1.1329 42 1 0.2751 -10.3390 3.1425 43 1 2.2910 -10.2398 4.5826 44 1 1.4882 -8.6537 4.4974 45 1 0.2432 -9.0678 1.0137 46 1 0.2923 -7.9698 2.4136 47 1 3.8422 -8.6933 0.1377 48 1 2.3168 -9.4905 -0.3157 49 1 -1.0548 -3.3856 2.4489 50 1 -0.5998 -1.7588 0.6144 51 1 -0.5266 -2.4850 -1.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083986479.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:42 Heat of formation + Delta-G solvation = -83.628202 kcal Electronic energy + Delta-G solvation = -31045.191087 eV Core-core repulsion = 27136.369967 eV Total energy + Delta-G solvation = -3908.821120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85691 -39.25023 -37.71012 -34.72092 -34.04612 -32.95243 -32.82739 -32.68494 -31.46061 -28.49273 -26.99320 -26.12700 -25.98077 -24.59105 -22.97941 -21.65067 -21.58042 -20.61047 -20.06181 -19.49837 -17.89193 -17.31492 -16.68786 -16.48572 -15.39660 -14.89041 -14.79297 -14.71524 -14.58552 -14.51638 -14.36380 -14.10016 -13.49834 -13.43661 -13.37250 -13.09348 -12.95388 -12.81925 -12.59549 -12.55405 -12.41930 -11.73532 -11.31920 -11.12936 -11.10028 -11.04489 -11.03296 -11.01500 -10.97222 -10.84335 -10.58536 -10.52921 -10.34167 -10.03064 -9.84020 -9.83020 -9.81648 -9.35212 -9.14175 -8.68742 -8.61003 -6.83566 -5.68493 -3.08026 2.89490 3.39701 3.42141 3.45365 3.47823 4.28259 4.32265 4.34088 4.49753 4.65019 4.83023 4.91470 4.98791 5.00736 5.04337 5.09029 5.12596 5.17408 5.19149 5.35235 5.39274 5.44592 5.49979 5.51047 5.57189 5.57763 5.75030 5.75453 5.81992 5.84088 5.86613 5.87922 5.95187 5.95341 5.97417 6.07213 6.08572 6.18919 6.28477 6.30939 6.33800 6.34670 6.61837 6.73558 6.99739 7.27230 7.57513 7.72720 7.90409 8.12882 8.32318 8.55620 9.19311 9.80373 10.43999 11.36689 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.002892 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.722045 B = 9680.511285 C = 9867.310159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.133 3.867 11 C 0.142 3.858 12 H 0.097 0.903 13 N -0.706 5.706 14 C 0.517 3.483 15 O -0.545 6.545 16 C -0.068 4.068 17 C -0.102 4.102 18 C -0.084 4.084 19 C -0.109 4.109 20 C -0.086 4.086 21 C -0.108 4.108 22 C -0.083 4.083 23 C -0.109 4.109 24 C -0.100 4.100 25 C -0.087 4.087 26 C 0.068 3.932 27 H 0.058 0.942 28 O -0.561 6.561 29 C 0.127 3.873 30 H 0.252 0.748 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.406 0.594 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.379 0.621 50 H 0.115 0.885 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -22.064 8.427 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.006 3.994 11 C 0.037 3.963 12 H 0.115 0.885 13 N -0.357 5.357 14 C 0.303 3.697 15 O -0.422 6.422 16 C -0.071 4.071 17 C -0.139 4.139 18 C -0.102 4.102 19 C -0.146 4.146 20 C -0.105 4.105 21 C -0.146 4.146 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.125 4.125 26 C 0.008 3.992 27 H 0.075 0.925 28 O -0.367 6.367 29 C 0.001 3.999 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.242 0.758 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.226 0.774 50 H 0.133 0.867 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.318 -22.184 7.482 23.449 hybrid contribution -0.185 1.337 0.349 1.394 sum 1.133 -20.847 7.831 22.298 Atomic orbital electron populations 1.69717 1.04897 1.24761 1.58293 1.24751 0.95765 0.97673 1.02589 0.86034 0.78528 0.83166 0.77572 1.21642 1.21671 1.20705 1.19105 0.90578 0.82323 1.42359 0.90448 1.44291 1.01420 0.99731 1.86838 1.21581 0.93904 0.85535 0.98415 1.22119 0.95172 0.85140 0.93872 0.88467 1.45864 1.56280 1.18473 1.15050 1.20568 0.77532 0.83349 0.88238 1.90679 1.53101 1.80397 1.18067 1.20676 0.97072 0.93847 0.95483 1.21556 0.99841 0.97452 0.95087 1.21037 0.96499 0.95176 0.97511 1.21560 0.98013 0.98276 0.96790 1.21097 0.96149 0.97064 0.96181 1.21554 0.96271 0.97308 0.99445 1.21022 0.98303 0.95433 0.95429 1.21563 0.95924 1.00232 0.96915 1.21537 0.95363 0.97666 0.99254 1.21338 1.00270 0.94026 0.96828 1.23558 0.95584 0.98696 0.81406 0.92466 1.86240 1.54698 1.76736 1.18983 1.22596 0.85959 0.92463 0.98861 0.93760 0.95347 0.95536 0.75793 0.91203 0.91312 0.90899 0.91871 0.92036 0.91065 0.92030 0.91960 0.90991 0.91957 0.91730 0.91495 0.91323 0.91220 0.91345 0.77392 0.86744 0.96035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.61 10.09 55.49 0.56 -26.05 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.57 3.39 -170.06 -0.58 -16.15 16 10 C 0.13 3.02 6.99 -3.07 -0.02 3.00 16 11 C 0.14 2.69 3.12 -66.09 -0.21 2.49 16 12 H 0.10 1.90 7.69 -51.93 -0.40 1.50 16 13 N -0.71 -11.20 4.87 -52.02 -0.25 -11.45 16 14 C 0.52 8.19 6.48 -10.98 -0.07 8.12 16 15 O -0.55 -10.67 15.71 5.56 0.09 -10.58 16 16 C -0.07 -0.80 0.61 -155.66 -0.10 -0.89 16 17 C -0.10 -1.11 4.37 -26.73 -0.12 -1.23 16 18 C -0.08 -0.73 3.19 -90.62 -0.29 -1.02 16 19 C -0.11 -0.91 5.19 -26.73 -0.14 -1.05 16 20 C -0.09 -0.77 3.19 -90.60 -0.29 -1.06 16 21 C -0.11 -0.86 5.19 -26.73 -0.14 -1.00 16 22 C -0.08 -0.68 3.19 -90.65 -0.29 -0.97 16 23 C -0.11 -0.86 5.19 -26.73 -0.14 -0.99 16 24 C -0.10 -1.00 4.37 -26.76 -0.12 -1.12 16 25 C -0.09 -1.00 3.77 -26.71 -0.10 -1.10 16 26 C 0.07 1.24 4.28 -24.57 -0.11 1.14 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 O -0.56 -9.50 12.23 -35.23 -0.43 -9.93 16 29 C 0.13 2.99 5.62 -2.52 -0.01 2.98 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 31 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 5.87 6.40 -40.82 -0.26 5.61 16 34 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 47 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 49 H 0.38 5.16 9.12 45.56 0.42 5.57 16 50 H 0.12 2.97 5.87 -51.93 -0.30 2.66 16 51 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -32.02 376.27 -10.41 -42.43 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.06 Total: 8.26 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.38 Total: 0.56 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.27 Total: -53.64 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.34 Total: -20.51 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.02 -10.41 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083986479.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.197 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds