Wall clock time and date at job start Sat Apr 11 2020 04:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34521 * 125.78917 * 2 1 4 4 C 1.41382 * 106.84045 * 180.02562 * 3 2 1 5 5 C 1.34520 * 106.84403 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.78860 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47278 * 90.00365 * 6 5 4 8 8 O 1.21280 * 119.99467 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00177 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00129 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47281 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.58285 * 299.99940 * 11 10 9 13 13 C 1.53191 * 109.58896 * 179.56846 * 11 10 9 14 14 C 1.53034 * 109.31571 * 185.57775 * 13 11 10 15 15 C 1.53040 * 109.53745 * 61.36532 * 14 13 11 16 16 C 1.53001 * 109.50040 * 58.58523 * 15 14 13 17 17 C 1.53000 * 109.50138 * 178.65647 * 15 14 13 18 18 C 1.53630 * 109.24022 * 298.51039 * 15 14 13 19 19 N 1.46924 * 109.58581 * 60.27971 * 11 10 9 20 20 C 1.36944 * 120.63138 * 353.37330 * 19 11 10 21 21 H 1.07997 * 119.99884 * 31.35323 * 20 19 11 22 22 C 1.38811 * 120.00010 * 211.35792 * 20 19 11 23 23 N 1.31615 * 120.00247 * 196.94778 * 22 20 19 24 24 Si 1.86799 * 120.00115 * 16.94557 * 22 20 19 25 25 H 1.48503 * 109.47230 * 271.63856 * 24 22 20 26 26 H 1.48506 * 109.47388 * 31.63703 * 24 22 20 27 27 H 1.48498 * 109.47318 * 151.64115 * 24 22 20 28 28 O 1.34303 * 108.41413 * 0.26494 * 5 4 3 29 29 H 1.09001 * 109.46653 * 90.00505 * 1 2 3 30 30 H 1.09002 * 109.47070 * 209.99805 * 1 2 3 31 31 H 1.08993 * 109.47270 * 329.99835 * 1 2 3 32 32 H 1.08001 * 126.57638 * 0.02562 * 3 2 1 33 33 H 1.08006 * 126.57926 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47531 * 329.99698 * 6 5 4 35 35 H 1.09004 * 109.46907 * 209.99836 * 6 5 4 36 36 H 0.97002 * 119.99947 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.46921 * 60.00097 * 10 9 7 38 38 H 1.09001 * 109.47352 * 299.99934 * 10 9 7 39 39 H 1.09000 * 109.49428 * 305.53025 * 13 11 10 40 40 H 1.08999 * 109.49408 * 65.59241 * 13 11 10 41 41 H 1.08996 * 109.46275 * 181.38151 * 14 13 11 42 42 H 1.08996 * 109.45979 * 301.36066 * 14 13 11 43 43 H 1.09002 * 109.46618 * 60.00327 * 16 15 14 44 44 H 1.08999 * 109.47559 * 180.02562 * 16 15 14 45 45 H 1.08995 * 109.47114 * 300.00161 * 16 15 14 46 46 H 1.08996 * 109.47228 * 59.99525 * 17 15 14 47 47 H 1.08994 * 109.47335 * 180.02562 * 17 15 14 48 48 H 1.09011 * 109.46580 * 299.99865 * 17 15 14 49 49 H 1.08994 * 109.74265 * 295.11731 * 18 15 14 50 50 H 1.09003 * 109.66059 * 174.54786 * 18 15 14 51 51 H 0.96993 * 120.00674 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5815 -0.7122 -0.0004 6 6 4.7707 -1.6377 -0.0003 7 6 5.1672 -1.9461 1.4206 8 8 4.5455 -1.4615 2.3423 9 7 6.2125 -2.7603 1.6670 10 6 6.5983 -3.0596 3.0482 11 6 7.8056 -3.9995 3.0483 12 1 7.5475 -4.9259 2.5353 13 6 8.2180 -4.3057 4.4915 14 6 9.5067 -5.1310 4.4855 15 6 10.6271 -4.3257 3.8235 16 6 10.8320 -3.0144 4.5848 17 6 11.9233 -5.1383 3.8480 18 6 10.2407 -4.0225 2.3679 19 7 8.9325 -3.3537 2.3614 20 6 8.7653 -2.1541 1.7223 21 1 8.0453 -1.4401 2.0939 22 6 9.5211 -1.8560 0.5969 23 7 9.6170 -0.6115 0.1792 24 14 10.4024 -3.2210 -0.3249 25 1 11.7503 -3.4257 0.2637 26 1 9.6188 -4.4778 -0.2162 27 1 10.5387 -2.8447 -1.7549 28 8 2.2925 -1.0893 -0.0055 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.9665 2.1205 0.0004 33 1 4.5213 1.2434 -0.0012 34 1 5.6040 -1.1587 -0.5143 35 1 4.5107 -2.5634 -0.5139 36 1 6.7095 -3.1482 0.9297 37 1 5.7649 -3.5381 3.5626 38 1 6.8588 -2.1340 3.5614 39 1 8.3866 -3.3717 5.0276 40 1 7.4262 -4.8701 4.9841 41 1 9.7890 -5.3711 5.5105 42 1 9.3446 -6.0534 3.9278 43 1 11.1032 -3.2326 5.6178 44 1 11.6298 -2.4409 4.1128 45 1 9.9088 -2.4354 4.5661 46 1 11.7772 -6.0717 3.3045 47 1 12.7210 -4.5641 3.3769 48 1 12.1951 -5.3577 4.8806 49 1 10.1788 -4.9520 1.8021 50 1 10.9879 -3.3680 1.9188 51 1 10.1455 -0.4031 -0.6069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099021925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:03 Heat of formation + Delta-G solvation = -8.660756 kcal Electronic energy + Delta-G solvation = -30277.188621 eV Core-core repulsion = 26371.618334 eV Total energy + Delta-G solvation = -3905.570287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.33141 -39.42568 -38.52873 -35.21397 -33.21071 -32.93894 -32.77158 -32.19889 -30.77884 -29.86831 -27.54624 -26.78835 -25.55214 -24.98139 -23.34251 -22.60626 -21.53592 -20.22206 -20.06918 -19.51176 -18.41614 -17.05676 -16.45326 -16.28567 -15.66588 -15.49391 -15.20487 -14.90867 -14.48913 -14.15667 -13.97937 -13.75335 -13.59156 -13.29079 -13.22508 -12.98214 -12.92265 -12.60951 -12.54635 -12.40335 -12.25870 -12.06071 -11.82085 -11.63769 -11.56451 -11.46399 -11.29709 -11.08062 -10.98467 -10.65875 -10.55313 -10.36050 -10.00105 -9.84528 -9.60495 -9.56223 -9.46601 -9.28819 -8.70934 -8.24322 -8.01032 -6.95824 -6.01151 -3.42639 1.92706 2.85564 3.06928 3.23444 3.27080 3.39741 3.41861 3.95568 4.43989 4.76282 4.77302 5.05500 5.11185 5.22160 5.27557 5.29830 5.30486 5.37174 5.39613 5.41851 5.53744 5.57122 5.65917 5.70551 5.80472 5.82001 5.92861 5.99065 6.02960 6.07473 6.12581 6.19425 6.25748 6.27361 6.28911 6.32438 6.35670 6.39699 6.48283 6.51008 6.63091 6.70680 6.80280 6.82923 6.86445 7.08538 7.16275 7.42526 7.90642 8.23479 8.30594 8.85988 8.88462 9.63789 10.02884 11.13196 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.003254 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.232341 B = 8603.992688 C = 9600.688144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.026 4.026 3 C -0.209 4.209 4 C -0.195 4.195 5 C 0.017 3.983 6 C -0.063 4.063 7 C 0.514 3.486 8 O -0.554 6.554 9 N -0.693 5.693 10 C 0.137 3.863 11 C 0.164 3.836 12 H 0.036 0.964 13 C -0.131 4.131 14 C -0.096 4.096 15 C -0.085 4.085 16 C -0.127 4.127 17 C -0.139 4.139 18 C 0.137 3.863 19 N -0.602 5.602 20 C -0.260 4.260 21 H 0.094 0.906 22 C 0.030 3.970 23 N -0.904 5.904 24 Si 0.877 3.123 25 H -0.288 1.288 26 H -0.272 1.272 27 H -0.306 1.306 28 O -0.174 6.174 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.411 0.589 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.023 0.977 50 H 0.073 0.927 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -5.203 1.616 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 C -0.228 4.228 4 C -0.214 4.214 5 C -0.033 4.033 6 C -0.102 4.102 7 C 0.300 3.700 8 O -0.433 6.433 9 N -0.344 5.344 10 C 0.013 3.987 11 C 0.057 3.943 12 H 0.054 0.946 13 C -0.171 4.171 14 C -0.134 4.134 15 C -0.087 4.087 16 C -0.184 4.184 17 C -0.197 4.197 18 C 0.012 3.988 19 N -0.326 5.326 20 C -0.388 4.388 21 H 0.111 0.889 22 C -0.170 4.170 23 N -0.547 5.547 24 Si 0.708 3.292 25 H -0.215 1.215 26 H -0.197 1.197 27 H -0.234 1.234 28 O -0.071 6.071 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.041 0.959 50 H 0.091 0.909 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.731 -5.030 2.137 10.301 hybrid contribution 1.228 -0.637 -0.965 1.687 sum -7.503 -5.667 1.172 9.475 Atomic orbital electron populations 1.20227 0.85518 1.03764 1.03003 1.22290 0.93758 0.84358 1.07171 1.21502 0.92823 0.99084 1.09362 1.21549 0.98181 0.93902 1.07807 1.21559 0.82273 0.94062 1.05412 1.20133 0.93512 0.99676 0.96925 1.20125 0.80507 0.79093 0.90317 1.90673 1.54299 1.52207 1.46099 1.45852 1.30641 1.48269 1.09595 1.21242 0.95037 0.99363 0.83078 1.20746 0.87505 0.93955 0.92073 0.94645 1.21998 0.96807 1.00417 0.97846 1.21417 0.94898 0.97733 0.99356 1.21120 0.93932 0.95461 0.98180 1.21714 1.02633 0.96611 0.97445 1.21828 0.97507 0.99547 1.00818 1.21543 0.88423 0.95913 0.92917 1.44390 1.03021 1.22837 1.62346 1.18986 1.23109 0.91355 1.05356 0.88866 1.25324 0.98734 0.95705 0.97225 1.69798 1.41923 1.16819 1.26113 0.87083 0.79912 0.83487 0.78715 1.21539 1.19706 1.23395 1.83893 1.16415 1.35054 1.71703 0.90519 0.90817 0.89644 0.83830 0.83399 0.85265 0.87783 0.75202 0.92573 0.91284 0.91165 0.92651 0.93012 0.92823 0.94505 0.93398 0.91074 0.93279 0.92967 0.93234 0.95920 0.90854 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.42 36.01 0.38 -0.27 16 2 C -0.03 -0.37 7.32 -35.62 -0.26 -0.63 16 3 C -0.21 -3.08 10.81 -39.70 -0.43 -3.51 16 4 C -0.20 -3.28 10.81 -39.70 -0.43 -3.71 16 5 C 0.02 0.30 5.81 -35.63 -0.21 0.09 16 6 C -0.06 -1.00 6.23 -29.04 -0.18 -1.18 16 7 C 0.51 9.80 7.82 -10.99 -0.09 9.72 16 8 O -0.55 -12.45 16.03 5.56 0.09 -12.36 16 9 N -0.69 -12.70 3.85 -60.29 -0.23 -12.93 16 10 C 0.14 2.47 4.43 -4.04 -0.02 2.45 16 11 C 0.16 2.85 3.01 -67.60 -0.20 2.65 16 12 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 13 C -0.13 -1.98 5.03 -26.61 -0.13 -2.12 16 14 C -0.10 -1.40 4.71 -26.69 -0.13 -1.53 16 15 C -0.09 -1.39 0.77 -154.16 -0.12 -1.51 16 16 C -0.13 -2.14 7.99 37.16 0.30 -1.84 16 17 C -0.14 -1.98 8.48 37.16 0.32 -1.67 16 18 C 0.14 2.72 2.91 -3.48 -0.01 2.71 16 19 N -0.60 -12.35 2.15 -164.51 -0.35 -12.70 16 20 C -0.26 -6.25 7.42 -15.06 -0.11 -6.36 16 21 H 0.09 2.50 6.06 -52.49 -0.32 2.18 16 22 C 0.03 0.77 5.27 -17.43 -0.09 0.67 16 23 N -0.90 -25.39 13.97 55.49 0.78 -24.61 16 24 Si 0.88 20.47 24.32 -169.99 -4.13 16.34 16 25 H -0.29 -6.70 6.49 56.52 0.37 -6.33 16 26 H -0.27 -6.14 6.77 56.52 0.38 -5.76 16 27 H -0.31 -7.42 7.11 56.52 0.40 -7.02 16 28 O -0.17 -2.93 10.65 5.71 0.06 -2.87 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.15 2.40 8.06 -52.48 -0.42 1.98 16 34 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 35 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.41 7.48 7.40 -40.82 -0.30 7.18 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.41 7.42 -51.93 -0.39 1.03 16 39 H 0.07 1.13 6.34 -51.93 -0.33 0.80 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 49 H 0.02 0.46 7.06 -51.93 -0.37 0.09 16 50 H 0.07 1.64 4.63 -51.93 -0.24 1.40 16 51 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -30.62 392.01 -7.93 -38.55 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -8.63 Total: 10.73 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.42 Total: -6.05 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.19 Total: -50.25 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.15 Total: -15.23 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.13 Total: 16.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.62 -7.93 -38.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099021925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.892 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds