Wall clock time and date at job start Sat Apr 11 2020 04:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00339 * 2 1 4 4 C 1.53001 * 109.47474 * 270.00566 * 3 2 1 5 5 H 1.08994 * 109.46907 * 59.99838 * 4 3 2 6 6 O 1.42901 * 109.46705 * 299.99821 * 4 3 2 7 7 C 1.53004 * 109.46750 * 179.97438 * 4 3 2 8 8 C 1.50706 * 109.46503 * 184.99801 * 7 4 3 9 9 C 1.38238 * 119.99727 * 90.00317 * 8 7 4 10 10 C 1.38234 * 119.99693 * 180.02562 * 9 8 7 11 11 C 1.38234 * 120.00240 * 359.97438 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.26327 * 11 10 9 13 13 C 1.38234 * 120.00207 * 270.01808 * 8 7 4 14 14 C 1.34776 * 119.99781 * 180.02562 * 2 1 3 15 15 O 1.21589 * 120.00078 * 179.97438 * 14 2 1 16 16 N 1.34773 * 120.00206 * 359.97438 * 14 2 1 17 17 C 1.46504 * 120.00544 * 180.02562 * 16 14 2 18 18 C 1.52993 * 109.47179 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47245 * 299.99707 * 18 17 16 20 20 C 1.52996 * 109.47603 * 59.99965 * 18 17 16 21 21 C 1.50707 * 109.46930 * 180.02562 * 18 17 16 22 22 H 1.08001 * 119.99903 * 359.97438 * 21 18 17 23 23 C 1.37876 * 119.99798 * 179.97438 * 21 18 17 24 24 N 1.31514 * 120.00318 * 0.02562 * 23 21 18 25 25 Si 1.86804 * 119.99716 * 179.97438 * 23 21 18 26 26 H 1.48494 * 109.47116 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46811 * 119.99766 * 25 23 21 28 28 H 1.48490 * 109.47149 * 239.99989 * 25 23 21 29 29 H 1.09001 * 109.47394 * 89.99332 * 1 2 3 30 30 H 1.08999 * 109.47416 * 209.99923 * 1 2 3 31 31 H 1.09000 * 109.46633 * 329.99221 * 1 2 3 32 32 H 1.09011 * 109.47206 * 150.00305 * 3 2 1 33 33 H 1.09002 * 109.47054 * 30.00698 * 3 2 1 34 34 H 0.96698 * 114.00180 * 299.99641 * 6 4 3 35 35 H 1.09000 * 109.47324 * 65.00391 * 7 4 3 36 36 H 1.08993 * 109.47443 * 304.99595 * 7 4 3 37 37 H 1.07997 * 119.99846 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.99751 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.99744 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 41 41 H 1.07999 * 120.00008 * 0.02562 * 13 8 7 42 42 H 0.97006 * 119.99975 * 0.02562 * 16 14 2 43 43 H 1.09004 * 109.46797 * 300.00433 * 17 16 14 44 44 H 1.09002 * 109.46680 * 59.99318 * 17 16 14 45 45 H 1.08999 * 109.46948 * 60.00250 * 19 18 17 46 46 H 1.08997 * 109.46912 * 180.02562 * 19 18 17 47 47 H 1.08996 * 109.47100 * 300.00396 * 19 18 17 48 48 H 1.09004 * 109.46895 * 59.99825 * 20 18 17 49 49 H 1.08997 * 109.47452 * 179.97438 * 20 18 17 50 50 H 1.09001 * 109.47321 * 300.00364 * 20 18 17 51 51 H 0.97003 * 119.99618 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5001 1.8409 -1.9562 6 8 3.2247 0.7145 -2.1162 7 6 3.2170 3.0358 -1.4423 8 6 3.3609 3.5328 -2.8577 9 6 2.3938 4.3567 -3.4026 10 6 2.5255 4.8121 -4.7011 11 6 3.6244 4.4441 -5.4546 12 6 4.5890 3.6162 -4.9114 13 6 4.4597 3.1645 -3.6113 14 6 2.1388 -1.1672 -0.0005 15 8 3.3547 -1.1673 -0.0010 16 7 1.4649 -2.3344 -0.0005 17 6 2.1973 -3.6032 -0.0005 18 6 1.2030 -4.7660 0.0001 19 6 0.3239 -4.6847 1.2498 20 6 0.3229 -4.6853 -1.2487 21 6 1.9565 -6.0712 0.0008 22 1 3.0365 -6.0713 0.0003 23 6 1.2670 -7.2652 0.0019 24 7 -0.0481 -7.2652 0.0020 25 14 2.2010 -8.8830 0.0020 26 1 3.6609 -8.6117 0.0013 27 1 1.8432 -9.6610 1.2153 28 1 1.8412 -9.6623 -1.2097 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3632 0.8899 0.5140 32 1 3.1500 1.1383 0.5138 33 1 1.6085 2.0283 0.5140 34 1 4.0872 0.5460 -1.7127 35 1 4.2053 2.8851 -1.0080 36 1 2.6694 3.7711 -0.8529 37 1 1.5350 4.6438 -2.8141 38 1 1.7697 5.4555 -5.1269 39 1 3.7271 4.7996 -6.4692 40 1 5.4454 3.3251 -5.5015 41 1 5.2149 2.5203 -3.1858 42 1 0.4949 -2.3344 -0.0005 43 1 2.8240 -3.6609 -0.8905 44 1 2.8241 -3.6609 0.8894 45 1 -0.2210 -3.7407 1.2498 46 1 -0.3841 -5.5134 1.2504 47 1 0.9509 -4.7422 2.1395 48 1 0.9492 -4.7433 -2.1390 49 1 -0.3852 -5.5139 -1.2485 50 1 -0.2220 -3.7412 -1.2488 51 1 -0.5331 -8.1052 0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459242575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:44 Heat of formation + Delta-G solvation = -59.071368 kcal Electronic energy + Delta-G solvation = -29187.342647 eV Core-core repulsion = 25279.586391 eV Total energy + Delta-G solvation = -3907.756255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.04409 -39.43614 -37.50218 -36.26992 -34.94354 -33.18224 -32.97629 -31.05883 -30.88692 -29.71255 -27.13272 -26.15341 -25.68616 -25.35240 -24.28043 -22.75746 -22.25225 -21.15885 -19.64564 -18.81314 -17.87718 -17.10093 -16.50564 -15.98522 -15.82720 -15.71949 -15.24604 -15.21092 -14.82818 -14.58336 -14.16787 -13.82955 -13.59261 -13.50729 -13.32409 -13.08837 -12.82152 -12.69455 -12.54391 -12.41052 -12.19175 -12.03802 -11.63648 -11.38440 -11.34798 -11.16546 -11.15387 -11.05851 -10.84514 -10.62789 -10.35121 -10.26294 -10.17023 -9.65842 -9.58812 -9.25805 -9.08239 -8.90041 -8.74345 -8.51910 -8.36675 -8.04619 -5.99089 -4.08581 1.17771 1.24247 2.97343 3.29370 3.37854 3.43037 3.60173 3.71721 4.30356 4.40809 4.49225 4.54299 4.67987 4.79844 4.85364 4.94350 5.00985 5.04378 5.13592 5.17678 5.27772 5.33518 5.41951 5.43308 5.52186 5.57823 5.67256 5.83202 5.86888 5.97380 6.24737 6.28108 6.34357 6.42448 6.45589 6.54660 6.60940 6.83611 6.84922 6.86573 6.96649 7.07869 7.17008 7.29325 7.44015 7.59843 7.73244 7.81280 8.05003 8.16313 8.41955 8.49719 8.91617 9.11618 9.56975 11.02427 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.002226 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.551760 B =12575.304751 C =13112.473378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.634 5.634 3 C 0.104 3.896 4 C 0.098 3.902 5 H 0.094 0.906 6 O -0.544 6.544 7 C -0.114 4.114 8 C -0.072 4.072 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.128 4.128 12 C -0.119 4.119 13 C -0.103 4.103 14 C 0.708 3.292 15 O -0.597 6.597 16 N -0.733 5.733 17 C 0.151 3.849 18 C 0.055 3.945 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.502 4.502 22 H 0.058 0.942 23 C 0.065 3.935 24 N -0.887 5.887 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.377 0.623 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.393 0.607 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.004 0.996 46 H 0.085 0.915 47 H 0.026 0.974 48 H 0.027 0.973 49 H 0.084 0.916 50 H 0.004 0.996 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 24.460 -3.841 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.372 5.372 3 C -0.021 4.021 4 C 0.036 3.964 5 H 0.112 0.888 6 O -0.349 6.349 7 C -0.152 4.152 8 C -0.072 4.072 9 C -0.139 4.139 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.137 4.137 13 C -0.121 4.121 14 C 0.409 3.591 15 O -0.477 6.477 16 N -0.388 5.388 17 C 0.028 3.972 18 C 0.054 3.946 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.541 4.541 22 H 0.076 0.924 23 C -0.136 4.136 24 N -0.525 5.525 25 Si 0.721 3.279 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.225 0.775 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.229 0.771 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.104 0.896 47 H 0.045 0.955 48 H 0.046 0.954 49 H 0.103 0.897 50 H 0.023 0.977 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.374 24.248 -4.211 24.649 hybrid contribution 0.276 -0.790 0.285 0.884 sum 1.650 23.458 -3.926 23.841 Atomic orbital electron populations 1.21696 0.80273 1.02750 1.01603 1.46814 1.05872 1.04842 1.79638 1.21995 0.98434 0.84820 0.96844 1.22303 0.94881 0.86089 0.93089 0.88847 1.86604 1.33577 1.58869 1.55872 1.21336 1.02209 0.98114 0.93557 1.19710 0.94726 0.96821 0.95903 1.21017 0.98719 0.98425 0.95707 1.21097 0.98011 1.00354 0.94503 1.21124 0.94834 0.98839 0.99770 1.21157 0.99198 0.97838 0.95541 1.21041 0.97810 0.98936 0.94288 1.15868 0.85330 0.80314 0.77574 1.90802 1.11717 1.86288 1.58848 1.45618 1.10019 1.05125 1.78033 1.21554 0.94942 0.80497 1.00220 1.18369 0.91985 0.91453 0.92751 1.21815 1.00238 0.98975 0.97638 1.21808 1.00234 0.98984 0.97645 1.21028 0.92921 0.89701 1.50442 0.92367 1.24886 0.94879 0.98960 0.94890 1.69819 1.05765 1.26098 1.50864 0.86518 0.80246 0.83664 0.77471 1.19754 1.21119 1.21092 0.92918 0.91288 0.91288 0.89580 0.90301 0.77466 0.90348 0.90080 0.86319 0.86317 0.86384 0.86214 0.86130 0.77095 0.92974 0.93129 0.97725 0.89644 0.95479 0.95430 0.89685 0.97657 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.25 59.84 0.61 1.46 16 2 N -0.63 -8.57 2.83 -187.35 -0.53 -9.10 16 3 C 0.10 1.10 5.19 -4.04 -0.02 1.08 16 4 C 0.10 1.02 3.22 -26.73 -0.09 0.94 16 5 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 6 O -0.54 -7.63 11.64 -44.02 -0.51 -8.14 16 7 C -0.11 -0.93 5.03 -27.88 -0.14 -1.07 16 8 C -0.07 -0.69 4.97 -104.62 -0.52 -1.21 16 9 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 10 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 11 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 12 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 13 C -0.10 -1.04 9.40 -39.58 -0.37 -1.41 16 14 C 0.71 12.81 7.79 -86.92 -0.68 12.13 16 15 O -0.60 -12.44 14.71 -3.50 -0.05 -12.49 16 16 N -0.73 -13.73 4.82 -65.22 -0.31 -14.04 16 17 C 0.15 3.32 4.50 -4.04 -0.02 3.31 16 18 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 19 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 20 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 21 C -0.50 -13.33 8.01 -34.44 -0.28 -13.61 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 23 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 24 N -0.89 -23.82 9.35 55.43 0.52 -23.30 16 25 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 31 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.09 1.01 7.42 -51.92 -0.39 0.63 16 33 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 34 H 0.38 4.98 8.44 45.56 0.38 5.36 16 35 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 36 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.39 6.75 3.89 -40.82 -0.16 6.59 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 46 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 50 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 51 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -31.07 403.36 -10.16 -41.23 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.68 Total: 10.72 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.64 Total: -6.87 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.33 Total: -46.44 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.56 Total: -20.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.07 -10.16 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459242575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.840 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds