Wall clock time and date at job start Sat Apr 11 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 C 1.53006 * 109.46841 * 174.99605 * 6 4 2 8 8 N 1.46496 * 109.46693 * 180.02562 * 7 6 4 9 9 C 1.46508 * 120.00181 * 270.00295 * 8 7 6 10 10 C 1.34779 * 120.00304 * 90.00568 * 8 7 6 11 11 O 1.21276 * 119.99651 * 359.97438 * 10 8 7 12 12 C 1.50703 * 120.00322 * 179.97438 * 10 8 7 13 13 O 1.42899 * 109.46840 * 179.97438 * 12 10 8 14 14 C 1.35902 * 116.99379 * 180.02562 * 13 12 10 15 15 C 1.38727 * 120.05874 * 359.72037 * 14 13 12 16 16 C 1.38147 * 119.94247 * 179.74493 * 15 14 13 17 17 C 1.38264 * 120.05940 * 0.51476 * 16 15 14 18 18 C 1.38269 * 120.10580 * 359.76526 * 17 16 15 19 19 C 1.38140 * 120.05923 * 359.97438 * 18 17 16 20 20 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 30 30 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 31 31 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 33 33 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 35 35 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 36 36 H 1.08996 * 109.47554 * 295.00148 * 6 4 2 37 37 H 1.09001 * 109.46960 * 55.00369 * 6 4 2 38 38 H 1.08991 * 109.47526 * 300.00096 * 7 6 4 39 39 H 1.09001 * 109.46720 * 60.00616 * 7 6 4 40 40 H 1.08994 * 109.47129 * 89.99783 * 9 8 7 41 41 H 1.09001 * 109.47087 * 210.00806 * 9 8 7 42 42 H 1.09000 * 109.46713 * 329.99745 * 9 8 7 43 43 H 1.09000 * 109.46884 * 300.00271 * 12 10 8 44 44 H 1.08999 * 109.46986 * 59.99505 * 12 10 8 45 45 H 1.07998 * 120.02678 * 0.02562 * 15 14 13 46 46 H 1.08004 * 119.97140 * 180.27618 * 16 15 14 47 47 H 1.07997 * 119.95191 * 179.74460 * 17 16 15 48 48 H 1.08001 * 119.96824 * 179.97438 * 18 17 16 49 49 H 1.07998 * 120.02912 * 179.97438 * 19 18 17 50 50 H 0.97004 * 119.99747 * 95.00774 * 20 4 2 51 51 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 6 4.0801 -1.3314 2.5562 8 7 5.5451 -1.3314 2.5561 9 6 6.2777 -2.4812 2.0198 10 6 6.2190 -0.2736 3.0494 11 8 5.6126 0.6785 3.4929 12 6 7.7261 -0.2737 3.0498 13 8 8.2023 0.9476 3.6186 14 6 9.5496 1.1090 3.6936 15 6 10.3958 0.1101 3.2346 16 6 11.7650 0.2789 3.3072 17 6 12.2923 1.4377 3.8464 18 6 11.4510 2.4324 4.3098 19 6 10.0812 2.2707 4.2346 20 7 1.5517 -2.1025 1.2491 21 6 0.3102 -2.3897 1.7504 22 1 -0.3092 -1.5980 2.1454 23 6 -0.1524 -3.6985 1.7509 24 7 0.6002 -4.6626 1.2645 25 14 -1.8463 -4.0903 2.4340 26 1 -2.1036 -5.5479 2.3138 27 1 -1.9075 -3.6930 3.8636 28 1 -2.8744 -3.3413 1.6677 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9330 -1.3114 0.4070 37 1 3.9337 0.3018 1.1591 38 1 3.7172 -0.7418 3.3980 39 1 3.7165 -2.3551 2.6459 40 1 6.4592 -2.3321 0.9555 41 1 7.2301 -2.5803 2.5406 42 1 5.6886 -3.3869 2.1645 43 1 8.0891 -1.1155 3.6394 44 1 8.0896 -0.3636 2.0261 45 1 9.9844 -0.7969 2.8168 46 1 12.4241 -0.4966 2.9459 47 1 13.3629 1.5662 3.9060 48 1 11.8653 3.3365 4.7309 49 1 9.4245 3.0478 4.5971 50 1 2.1078 -2.8135 0.8941 51 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329760039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:13 Heat of formation + Delta-G solvation = -39.247554 kcal Electronic energy + Delta-G solvation = -28757.443674 eV Core-core repulsion = 24850.547044 eV Total energy + Delta-G solvation = -3906.896630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69389 -39.63892 -37.72475 -37.26707 -35.56315 -33.36698 -31.91919 -31.36285 -30.47046 -29.60481 -28.31222 -27.05288 -26.17060 -24.88498 -23.22151 -22.91197 -22.38818 -21.27933 -19.43205 -19.12864 -18.74351 -17.43162 -17.02313 -16.74251 -16.59233 -16.04283 -15.51323 -15.13395 -14.79771 -14.65146 -14.34486 -13.96097 -13.75399 -13.73299 -13.57250 -13.35617 -13.29809 -12.92348 -12.79626 -12.71426 -12.33850 -11.96489 -11.94270 -11.81572 -11.58032 -11.39896 -11.25496 -11.20584 -10.89837 -10.76782 -10.36827 -10.30081 -10.10374 -9.99582 -9.80358 -9.74696 -9.35879 -9.14618 -8.90464 -8.62522 -8.54654 -7.00497 -6.07893 -3.07084 0.98520 1.10484 2.34186 2.47129 3.34284 3.44985 3.52589 3.54930 3.72077 4.20372 4.44815 4.55532 4.60938 4.67830 4.69427 4.79516 4.93060 5.03076 5.12455 5.21120 5.27673 5.31294 5.36533 5.48930 5.53495 5.58423 5.65604 5.68587 5.77446 5.88271 5.94787 6.02490 6.04725 6.05037 6.13802 6.18688 6.25494 6.33732 6.39629 6.42750 6.48481 6.62131 6.67600 6.72855 6.83546 7.03735 7.11824 7.29189 7.32784 7.85371 8.06256 8.76486 9.23560 10.10012 10.26010 11.39804 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.002174 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.430938 B =12876.458773 C =13661.818201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.190 3.810 5 H 0.050 0.950 6 C -0.137 4.137 7 C 0.122 3.878 8 N -0.609 5.609 9 C 0.072 3.928 10 C 0.512 3.488 11 O -0.515 6.515 12 C 0.043 3.957 13 O -0.289 6.289 14 C 0.131 3.869 15 C -0.212 4.212 16 C -0.080 4.080 17 C -0.161 4.161 18 C -0.080 4.080 19 C -0.149 4.149 20 N -0.733 5.733 21 C -0.318 4.318 22 H 0.066 0.934 23 C -0.048 4.048 24 N -0.946 5.946 25 Si 1.074 2.926 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.040 0.960 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.129 0.871 49 H 0.133 0.867 50 H 0.364 0.636 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.432 9.029 1.772 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.079 3.921 5 H 0.068 0.932 6 C -0.177 4.177 7 C 0.001 3.999 8 N -0.344 5.344 9 C -0.071 4.071 10 C 0.298 3.702 11 O -0.389 6.389 12 C -0.035 4.035 13 O -0.201 6.201 14 C 0.085 3.915 15 C -0.231 4.231 16 C -0.098 4.098 17 C -0.180 4.180 18 C -0.098 4.098 19 C -0.168 4.168 20 N -0.375 5.375 21 C -0.449 4.449 22 H 0.084 0.916 23 C -0.245 4.245 24 N -0.592 5.592 25 Si 0.906 3.094 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.223 1.223 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.147 0.853 49 H 0.151 0.849 50 H 0.198 0.802 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.678 8.586 2.483 22.527 hybrid contribution 1.385 0.736 -0.693 1.715 sum 22.063 9.322 1.790 24.018 Atomic orbital electron populations 1.21822 0.95146 1.03806 0.98838 1.21729 0.96740 0.94409 1.00179 1.21922 1.00303 0.97408 1.00761 1.20161 0.89587 0.86992 0.95339 0.93198 1.22239 0.97709 1.00813 0.96910 1.21639 0.75832 1.03326 0.99109 1.47892 1.07957 1.17416 1.61159 1.21911 0.96920 0.89308 0.99003 1.19934 0.88386 0.83122 0.78787 1.90755 1.69577 1.33599 1.44995 1.22565 0.93698 0.87238 1.00049 1.86177 1.18796 1.37804 1.77348 1.19119 0.82074 0.94673 0.95607 1.21285 0.94574 0.99954 1.07283 1.20957 0.94244 0.97398 0.97201 1.21083 0.99933 0.94693 1.02264 1.20994 0.92246 0.98891 0.97700 1.20504 0.95416 0.96958 1.03927 1.42469 1.18182 1.02221 1.74672 1.20011 0.93624 0.95130 1.36114 0.91597 1.25655 1.05718 0.91517 1.01585 1.70898 1.11379 1.33167 1.43805 0.83307 0.74670 0.75934 0.75520 1.21209 1.22371 1.22345 0.94090 0.95253 0.89567 0.92559 0.93241 0.93835 0.93175 0.92432 0.91507 0.89997 0.89068 0.92180 0.91548 0.89899 0.89070 0.89060 0.85459 0.85729 0.85906 0.85284 0.84947 0.80243 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.26 37.16 0.31 -2.38 16 2 C -0.11 -1.99 2.69 -90.62 -0.24 -2.23 16 3 C -0.15 -2.28 8.85 37.15 0.33 -1.96 16 4 C 0.19 3.69 2.02 -67.93 -0.14 3.55 16 5 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 6 C -0.14 -2.28 4.86 -26.73 -0.13 -2.41 16 7 C 0.12 1.98 5.34 -4.04 -0.02 1.96 16 8 N -0.61 -8.04 2.87 -181.57 -0.52 -8.56 16 9 C 0.07 0.65 10.29 59.85 0.62 1.27 16 10 C 0.51 7.35 7.75 -10.98 -0.09 7.27 16 11 O -0.51 -9.71 16.08 -14.35 -0.23 -9.94 16 12 C 0.04 0.45 3.77 36.01 0.14 0.59 16 13 O -0.29 -3.77 9.67 -39.34 -0.38 -4.15 16 14 C 0.13 1.43 6.69 -39.22 -0.26 1.17 16 15 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 16 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 17 C -0.16 -1.18 10.04 -39.56 -0.40 -1.58 16 18 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 19 C -0.15 -1.49 9.99 -39.43 -0.39 -1.88 16 20 N -0.73 -16.94 4.45 -53.43 -0.24 -17.18 16 21 C -0.32 -8.36 7.57 -15.06 -0.11 -8.47 16 22 H 0.07 1.75 7.39 -52.48 -0.39 1.36 16 23 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 24 N -0.95 -27.99 13.70 55.49 0.76 -27.23 16 25 Si 1.07 25.47 29.92 -169.99 -5.09 20.39 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.30 -6.76 7.11 56.52 0.40 -6.35 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.95 6.01 -51.93 -0.31 1.64 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.74 6.32 -51.93 -0.33 0.41 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.11 6.18 -51.93 -0.32 0.79 16 38 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 39 H 0.09 1.58 7.50 -51.93 -0.39 1.19 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.42 6.44 -51.93 -0.33 0.08 16 42 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 43 H 0.09 0.73 6.91 -51.93 -0.36 0.37 16 44 H 0.09 0.74 7.64 -51.93 -0.40 0.34 16 45 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 46 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 49 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 50 H 0.36 8.68 6.63 -40.82 -0.27 8.41 16 51 H 0.25 7.31 6.77 -40.82 -0.28 7.03 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -33.05 407.46 -9.57 -42.62 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.37 Total: 8.67 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.65 Total: -10.74 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.00 Total: -52.97 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.61 Total: -14.09 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.39 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.05 -9.57 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329760039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.369 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds