Wall clock time and date at job start Sat Apr 11 2020 04:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21275 * 120.00347 * 2 1 4 4 N 1.34779 * 119.99951 * 180.02562 * 2 1 3 5 5 C 1.46490 * 120.00097 * 184.97895 * 4 2 1 6 6 H 1.08997 * 109.47425 * 321.08982 * 5 4 2 7 7 C 1.53004 * 109.47072 * 201.08866 * 5 4 2 8 8 N 1.46898 * 109.46887 * 55.00078 * 7 5 4 9 9 C 1.46900 * 110.99850 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46917 * 180.02562 * 9 8 7 11 11 C 1.38302 * 119.92820 * 269.71995 * 10 9 8 12 12 C 1.38104 * 120.07109 * 179.72497 * 11 10 9 13 13 C 1.38887 * 119.92467 * 0.57479 * 12 11 10 14 14 O 1.35747 * 120.06472 * 179.67882 * 13 12 11 15 15 C 1.34839 * 116.99645 * 185.97549 * 14 13 12 16 16 H 1.07998 * 119.99956 * 5.30683 * 15 14 13 17 17 C 1.38656 * 119.99805 * 185.30095 * 15 14 13 18 18 N 1.31550 * 119.99996 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99884 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47066 * 90.00135 * 19 17 15 21 21 H 1.48503 * 109.47134 * 210.00293 * 19 17 15 22 22 H 1.48501 * 109.47248 * 330.00390 * 19 17 15 23 23 C 1.38881 * 119.86030 * 359.70309 * 13 12 11 24 24 C 1.38093 * 119.93334 * 0.02562 * 23 13 12 25 25 C 1.52999 * 109.47368 * 81.09238 * 5 4 2 26 26 C 1.52998 * 109.47247 * 185.74658 * 25 5 4 27 27 C 1.53005 * 109.47322 * 185.52909 * 26 25 5 28 28 C 1.53003 * 109.47400 * 65.52598 * 26 25 5 29 29 H 1.08996 * 109.47117 * 239.99923 * 1 2 3 30 30 H 1.08999 * 109.46734 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46917 * 119.99329 * 1 2 3 32 32 H 0.96998 * 119.99564 * 4.97372 * 4 2 1 33 33 H 1.09007 * 109.46959 * 174.99877 * 7 5 4 34 34 H 1.08995 * 109.47279 * 295.00097 * 7 5 4 35 35 H 1.00903 * 111.00103 * 303.95201 * 8 7 5 36 36 H 1.09001 * 109.47051 * 299.99882 * 9 8 7 37 37 H 1.08999 * 109.47651 * 60.00031 * 9 8 7 38 38 H 1.08000 * 119.96569 * 359.97438 * 11 10 9 39 39 H 1.07994 * 120.03742 * 180.27619 * 12 11 10 40 40 H 0.97001 * 120.00338 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.02734 * 179.97438 * 23 13 12 42 42 H 1.08008 * 119.96503 * 180.02562 * 24 23 13 43 43 H 1.08995 * 109.47599 * 65.74429 * 25 5 4 44 44 H 1.09001 * 109.46921 * 305.74023 * 25 5 4 45 45 H 1.09000 * 109.46914 * 305.52679 * 26 25 5 46 46 H 1.09000 * 109.46938 * 299.99755 * 27 26 25 47 47 H 1.08995 * 109.46807 * 59.99788 * 27 26 25 48 48 H 1.09003 * 109.47055 * 180.02562 * 27 26 25 49 49 H 1.09003 * 109.47158 * 294.74443 * 28 26 25 50 50 H 1.09000 * 109.46765 * 54.74743 * 28 26 25 51 51 H 1.08998 * 109.47124 * 174.74152 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6417 -1.1697 0.1096 6 1 4.0512 -0.3432 -0.4710 7 6 4.1914 -2.4924 -0.4282 8 7 3.7069 -2.7029 -1.7989 9 6 4.2163 -3.9660 -2.3492 10 6 3.7000 -4.1467 -3.7534 11 6 2.5049 -4.8084 -3.9694 12 6 2.0261 -4.9707 -5.2546 13 6 2.7522 -4.4789 -6.3316 14 8 2.2874 -4.6425 -7.5965 15 6 3.0976 -4.2528 -8.6015 16 1 4.0998 -3.9128 -8.3862 17 6 2.6440 -4.2888 -9.9113 18 7 1.4232 -4.7026 -10.1734 19 14 3.7666 -3.7496 -11.3035 20 1 4.5361 -4.9186 -11.7999 21 1 2.9494 -3.1890 -12.4095 22 1 4.7068 -2.7124 -10.8079 23 6 3.9547 -3.8199 -6.1118 24 6 4.4253 -3.6560 -4.8239 25 6 4.0428 -1.0099 1.5774 26 6 5.5629 -0.8687 1.6782 27 6 5.9766 -0.8474 3.1511 28 6 5.9997 0.4350 1.0068 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5137 -0.8901 32 1 1.6986 -2.0056 -0.0737 33 1 5.2810 -2.4596 -0.4289 34 1 3.8530 -3.3114 0.2065 35 1 2.6990 -2.6728 -1.8348 36 1 5.3060 -3.9430 -2.3633 37 1 3.8785 -4.7955 -1.7280 38 1 1.9435 -5.1952 -3.1318 39 1 1.0907 -5.4836 -5.4223 40 1 1.1059 -4.7281 -11.0897 41 1 4.5217 -3.4368 -6.9474 42 1 5.3602 -3.1432 -4.6523 43 1 3.7213 -1.8866 2.1395 44 1 3.5672 -0.1198 1.9891 45 1 6.0400 -1.7121 1.1790 46 1 5.4995 -0.0040 3.6503 47 1 5.6655 -1.7761 3.6293 48 1 7.0596 -0.7463 3.2229 49 1 5.7892 0.3818 -0.0614 50 1 5.4522 1.2699 1.4440 51 1 7.0689 0.5818 1.1596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001392145489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:15 Heat of formation + Delta-G solvation = -62.146133 kcal Electronic energy + Delta-G solvation = -28276.809257 eV Core-core repulsion = 24368.919670 eV Total energy + Delta-G solvation = -3907.889587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.11520 -39.08438 -37.85143 -36.90448 -35.47749 -34.07409 -32.32177 -31.27806 -30.19025 -29.64351 -28.59481 -27.39629 -26.12372 -25.19269 -23.41738 -22.23496 -21.96443 -20.80453 -20.43259 -19.84558 -17.99923 -17.30928 -16.93906 -16.51622 -15.96658 -15.71326 -15.16291 -14.72666 -14.54635 -14.47374 -14.40928 -14.23170 -13.79798 -13.63311 -13.54629 -13.43213 -12.91278 -12.87594 -12.72879 -12.65733 -12.58177 -12.42658 -12.17824 -12.00021 -11.82792 -11.64319 -11.47184 -11.27057 -11.22273 -10.90932 -10.83979 -10.77173 -10.61997 -10.52535 -10.43152 -9.98707 -9.37374 -9.21313 -8.84517 -8.44469 -8.18562 -7.20499 -6.46499 -4.05077 2.20092 2.26659 2.50142 3.00848 3.12382 3.13584 3.18336 3.96045 4.05884 4.43397 4.57153 4.63966 4.69746 4.75507 4.81210 4.94677 5.04811 5.09982 5.13098 5.19235 5.23293 5.29616 5.34529 5.36214 5.41188 5.44887 5.51359 5.58766 5.62714 5.65774 5.71478 5.73290 5.79195 5.86110 5.87468 5.92341 6.10685 6.16392 6.20255 6.32615 6.41388 6.67900 6.88423 6.94450 7.07801 7.17707 7.29805 7.34830 7.40858 7.44057 7.81396 7.98649 8.06860 8.99347 9.69063 10.71477 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.002113 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.515041 B =13245.401626 C =13742.785639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.513 3.487 3 O -0.544 6.544 4 N -0.727 5.727 5 C 0.144 3.856 6 H 0.099 0.901 7 C 0.049 3.951 8 N -0.682 5.682 9 C 0.119 3.881 10 C -0.187 4.187 11 C -0.069 4.069 12 C -0.194 4.194 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.234 4.234 24 C -0.048 4.048 25 C -0.123 4.123 26 C -0.095 4.095 27 C -0.146 4.146 28 C -0.149 4.149 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.340 0.660 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.055 0.945 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 4.513 24.440 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.301 3.699 3 O -0.421 6.421 4 N -0.379 5.379 5 C 0.039 3.961 6 H 0.117 0.883 7 C -0.080 4.080 8 N -0.314 5.314 9 C -0.009 4.009 10 C -0.188 4.188 11 C -0.088 4.088 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.067 4.067 25 C -0.162 4.162 26 C -0.114 4.114 27 C -0.204 4.204 28 C -0.207 4.207 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.158 0.842 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.351 5.535 23.857 24.874 hybrid contribution -0.251 -0.810 -0.294 0.897 sum 4.100 4.725 23.563 24.380 Atomic orbital electron populations 1.21943 0.91885 1.05536 1.04281 1.20762 0.90512 0.83498 0.75172 1.90719 1.70843 1.31365 1.49152 1.46071 1.07674 1.08757 1.75386 1.21127 0.79682 0.99278 0.95971 0.88314 1.22314 1.01296 0.95024 0.89395 1.60513 1.15479 1.36466 1.18981 1.20624 0.99363 0.88630 0.92288 1.19085 0.98233 1.07879 0.93630 1.20452 0.94997 0.97996 0.95338 1.20153 1.02098 1.08251 0.90871 1.19419 0.91955 0.92081 0.86384 1.83989 1.42414 1.71627 1.10037 1.21325 0.95838 1.45402 0.84154 0.89075 1.25294 0.96801 0.96769 0.97679 1.70033 1.15866 1.43112 1.20706 0.85712 0.79037 0.78999 0.79698 1.19869 1.20242 1.19163 1.21180 0.99292 1.07548 0.97364 1.20574 0.98068 0.96273 0.91742 1.22026 0.95905 1.02271 0.95979 1.21117 0.95001 0.98877 0.96415 1.21834 1.01146 1.01598 0.95779 1.21887 1.00750 0.96965 1.01067 0.89604 0.89053 0.89160 0.76938 0.89463 0.95090 0.84157 0.91090 0.95427 0.87596 0.86653 0.92007 0.85598 0.87503 0.91986 0.91249 0.90900 0.92792 0.92866 0.92649 0.92132 0.92575 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 10.32 36.01 0.37 -0.84 16 2 C 0.51 5.38 7.79 -10.98 -0.09 5.30 16 3 O -0.54 -8.11 16.78 5.56 0.09 -8.02 16 4 N -0.73 -6.19 4.47 -53.81 -0.24 -6.43 16 5 C 0.14 1.33 2.22 -67.93 -0.15 1.18 16 6 H 0.10 1.20 5.94 -51.93 -0.31 0.89 16 7 C 0.05 0.43 4.94 -3.82 -0.02 0.42 16 8 N -0.68 -7.76 6.48 -115.05 -0.75 -8.51 16 9 C 0.12 1.48 5.81 -4.97 -0.03 1.45 16 10 C -0.19 -3.04 5.40 -104.57 -0.56 -3.61 16 11 C -0.07 -1.16 9.69 -39.61 -0.38 -1.55 16 12 C -0.19 -4.00 9.99 -39.39 -0.39 -4.40 16 13 C 0.16 3.73 6.65 -39.10 -0.26 3.47 16 14 O -0.18 -5.05 9.76 0.03 0.00 -5.05 16 15 C -0.39 -10.91 9.44 30.89 0.29 -10.62 16 16 H 0.09 2.36 5.30 -52.49 -0.28 2.09 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 19 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 23 C -0.23 -5.09 9.13 -39.40 -0.36 -5.45 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 25 C -0.12 -0.99 4.39 -26.73 -0.12 -1.11 16 26 C -0.10 -0.71 2.80 -90.62 -0.25 -0.97 16 27 C -0.15 -0.97 9.19 37.16 0.34 -0.62 16 28 C -0.15 -1.28 8.84 37.16 0.33 -0.95 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 2.47 7.97 -40.82 -0.33 2.15 16 33 H 0.09 0.76 6.71 -51.92 -0.35 0.41 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 3.78 7.48 -39.29 -0.29 3.48 16 36 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 42 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.07 0.52 6.46 -51.93 -0.34 0.19 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 414.24 15.07 6.24 6.24 Total: -1.00 -32.75 414.24 -9.11 -41.86 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.43 Total: 7.44 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.76 Total: -18.59 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.23 Total: -39.40 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.75 -9.11 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001392145489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.290 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds