Wall clock time and date at job start Sat Apr 11 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46783 * 2 1 4 4 C 1.53006 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47142 * 55.00379 * 4 3 2 6 6 O 1.42899 * 109.47213 * 294.99917 * 4 3 2 7 7 C 1.42903 * 113.99629 * 150.00082 * 6 4 3 8 8 C 1.50700 * 109.46887 * 174.99694 * 4 3 2 9 9 O 1.21287 * 119.99933 * 115.00101 * 8 4 3 10 10 N 1.34776 * 120.00542 * 295.00237 * 8 4 3 11 11 C 1.46493 * 120.00207 * 180.02562 * 10 8 4 12 12 C 1.50708 * 109.47250 * 179.97438 * 11 10 8 13 13 C 1.38227 * 119.99873 * 269.72608 * 12 11 10 14 14 C 1.38236 * 119.99937 * 179.80559 * 13 12 11 15 15 C 1.38239 * 119.99882 * 0.42411 * 14 13 12 16 16 C 1.50695 * 120.00007 * 179.78729 * 15 14 13 17 17 H 1.09002 * 109.47072 * 160.01683 * 16 15 14 18 18 C 1.53001 * 109.47583 * 280.02104 * 16 15 14 19 19 N 1.46506 * 109.47284 * 40.02136 * 16 15 14 20 20 C 1.36932 * 119.99997 * 154.99666 * 19 16 15 21 21 H 1.07999 * 120.00107 * 0.02562 * 20 19 16 22 22 C 1.38815 * 120.00111 * 179.97438 * 20 19 16 23 23 N 1.31617 * 119.99493 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00383 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46868 * 89.99802 * 24 22 20 26 26 H 1.48493 * 109.46994 * 210.00283 * 24 22 20 27 27 H 1.48505 * 109.46909 * 330.00387 * 24 22 20 28 28 C 1.38231 * 119.99687 * 359.80845 * 15 14 13 29 29 C 1.38231 * 120.00632 * 0.02562 * 28 15 14 30 30 H 1.09001 * 109.47395 * 300.00035 * 1 2 3 31 31 H 1.09002 * 109.47035 * 60.00483 * 1 2 3 32 32 H 1.09009 * 109.46983 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47043 * 239.99561 * 2 1 3 34 34 H 1.09006 * 109.46591 * 119.99752 * 2 1 3 35 35 H 1.09000 * 109.47689 * 59.99956 * 3 2 1 36 36 H 1.09002 * 109.47677 * 299.99676 * 3 2 1 37 37 H 1.09002 * 109.47382 * 59.99956 * 7 6 4 38 38 H 1.09001 * 109.46938 * 299.99942 * 7 6 4 39 39 H 1.09004 * 109.46926 * 180.02562 * 7 6 4 40 40 H 0.97007 * 119.99870 * 0.02562 * 10 8 4 41 41 H 1.09006 * 109.47562 * 299.99903 * 11 10 8 42 42 H 1.09000 * 109.47280 * 59.99894 * 11 10 8 43 43 H 1.08004 * 120.00343 * 359.97438 * 13 12 11 44 44 H 1.08003 * 120.00326 * 180.20685 * 14 13 12 45 45 H 1.08996 * 109.46842 * 59.99591 * 18 16 15 46 46 H 1.08994 * 109.47617 * 180.02562 * 18 16 15 47 47 H 1.09007 * 109.46670 * 300.00423 * 18 16 15 48 48 H 0.97001 * 119.99804 * 335.00199 * 19 16 15 49 49 H 0.97005 * 119.99642 * 179.97438 * 23 22 20 50 50 H 1.08006 * 119.99905 * 179.97438 * 28 15 14 51 51 H 1.08000 * 120.00613 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 8 4.0458 0.8733 1.2220 7 6 5.3055 0.2094 1.1017 8 6 4.0723 2.8579 -0.1233 9 8 4.6926 3.3632 0.7883 10 7 3.8323 3.5623 -1.2470 11 6 4.3211 4.9380 -1.3676 12 6 3.9234 5.4966 -2.7096 13 6 4.7666 5.3529 -3.7954 14 6 4.4000 5.8618 -5.0273 15 6 3.1941 6.5221 -5.1712 16 6 2.7966 7.0811 -6.5131 17 1 1.7182 7.2379 -6.5363 18 6 3.5109 8.4146 -6.7421 19 7 3.1756 6.1368 -7.5672 20 6 2.5067 6.1400 -8.7620 21 1 1.7001 6.8388 -8.9275 22 6 2.8661 5.2457 -9.7610 23 7 3.8495 4.3944 -9.5595 24 14 1.9542 5.2503 -11.3913 25 1 2.6245 6.1849 -12.3306 26 1 1.9609 3.8812 -11.9661 27 1 0.5523 5.6888 -11.1729 28 6 2.3531 6.6700 -4.0842 29 6 2.7181 6.1582 -2.8531 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 6.0597 0.9196 0.7626 38 1 5.2207 -0.6029 0.3799 39 1 5.5969 -0.1953 2.0710 40 1 3.3359 3.1583 -1.9759 41 1 3.8866 5.5488 -0.5761 42 1 5.4074 4.9467 -1.2782 43 1 5.7106 4.8406 -3.6820 44 1 5.0573 5.7466 -5.8765 45 1 4.5893 8.2578 -6.7188 46 1 3.2231 8.8191 -7.7124 47 1 3.2289 9.1171 -5.9577 48 1 3.9003 5.5094 -7.4186 49 1 4.1004 3.7692 -10.2574 50 1 1.4111 7.1863 -4.1966 51 1 2.0612 6.2741 -2.0037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484561908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:54 Heat of formation + Delta-G solvation = -64.863254 kcal Electronic energy + Delta-G solvation = -28243.148790 eV Core-core repulsion = 24335.141380 eV Total energy + Delta-G solvation = -3908.007410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37556 -39.34365 -37.77007 -35.96812 -35.18817 -34.43747 -32.40512 -30.94380 -30.70938 -29.78427 -28.34432 -26.72625 -26.19273 -24.49920 -23.81355 -22.60781 -21.66855 -21.56037 -20.63160 -19.75049 -17.89902 -17.46446 -17.34365 -16.23027 -15.78898 -15.62526 -15.32640 -15.09461 -14.98451 -14.64729 -14.47388 -14.29765 -13.68529 -13.61600 -13.49201 -13.38636 -13.14620 -12.94390 -12.75140 -12.47999 -12.37610 -12.28280 -11.99008 -11.77491 -11.65727 -11.46341 -11.33519 -11.19037 -10.94939 -10.94415 -10.87891 -10.80581 -10.64987 -10.33326 -10.03690 -9.72946 -9.52997 -9.25018 -9.01729 -8.68238 -8.34820 -7.04198 -5.83003 -3.11730 1.42730 1.64724 2.39240 2.94889 3.39481 3.44845 3.46273 3.48441 4.03139 4.34460 4.50376 4.54240 4.57185 4.70139 4.76941 4.88407 4.95523 5.04600 5.12400 5.17671 5.25449 5.27714 5.29257 5.35911 5.42313 5.48681 5.51841 5.54526 5.58949 5.68682 5.74539 5.78875 5.87696 5.92617 5.98686 6.00901 6.20147 6.21456 6.27981 6.31743 6.46644 6.58356 6.67758 6.68739 6.73759 6.91581 7.12243 7.23407 7.32361 7.64604 8.02089 8.35354 9.46848 10.02177 10.37508 11.39637 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.002301 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.769882 B =12165.718177 C =13248.561912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.074 3.926 5 H 0.088 0.912 6 O -0.356 6.356 7 C 0.029 3.971 8 C 0.488 3.512 9 O -0.529 6.529 10 N -0.722 5.722 11 C 0.167 3.833 12 C -0.131 4.131 13 C -0.099 4.099 14 C -0.105 4.105 15 C -0.053 4.053 16 C 0.203 3.797 17 H 0.056 0.944 18 C -0.160 4.160 19 N -0.721 5.721 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.121 4.121 29 C -0.102 4.102 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.403 0.597 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.048 0.952 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.121 0.879 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -5.621 20.202 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.151 4.151 4 C 0.012 3.988 5 H 0.105 0.895 6 O -0.273 6.273 7 C -0.068 4.068 8 C 0.273 3.727 9 O -0.405 6.405 10 N -0.376 5.376 11 C 0.044 3.956 12 C -0.131 4.131 13 C -0.118 4.118 14 C -0.124 4.124 15 C -0.054 4.054 16 C 0.094 3.906 17 H 0.074 0.926 18 C -0.220 4.220 19 N -0.364 5.364 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.140 4.140 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.238 0.762 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.146 0.854 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.139 0.861 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.307 -5.242 20.908 21.595 hybrid contribution -0.155 -0.391 -1.620 1.674 sum -1.462 -5.633 19.288 20.147 Atomic orbital electron populations 1.21774 0.95454 1.01830 1.02021 1.21485 0.96117 0.95671 1.02633 1.21706 0.90692 0.98894 1.03770 1.22125 0.96310 0.90957 0.89380 0.89469 1.87984 1.36749 1.72215 1.30368 1.22868 0.85447 0.95720 1.02753 1.21436 0.80108 0.88892 0.82231 1.90710 1.39971 1.70995 1.38830 1.46229 1.57891 1.14863 1.18607 1.20137 0.99467 0.81658 0.94307 1.19647 0.96236 1.02685 0.94560 1.21011 0.99104 0.99253 0.92423 1.21089 0.96857 0.97357 0.97076 1.20531 0.93530 0.95252 0.96074 1.19255 0.97232 0.89676 0.84463 0.92608 1.22422 1.00875 0.98045 1.00656 1.42520 1.41386 1.40436 1.12021 1.19241 1.12243 1.14813 0.90770 0.91071 1.24738 0.98910 0.98609 0.98595 1.69657 1.30899 1.23655 1.33845 0.86187 0.79148 0.76829 0.84009 1.21693 1.21766 1.20737 1.21019 0.99720 1.00863 0.92365 1.20924 0.95706 0.98107 0.97328 0.92644 0.92520 0.92591 0.91895 0.91081 0.90329 0.89902 0.93675 0.93864 0.89243 0.76186 0.90887 0.90925 0.86384 0.85384 0.93313 0.92371 0.94302 0.78011 0.93465 0.86109 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.85 5.83 -26.73 -0.16 -1.01 16 3 C -0.11 -0.88 4.89 -26.73 -0.13 -1.01 16 4 C 0.07 0.69 2.51 -27.88 -0.07 0.62 16 5 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 6 O -0.36 -3.86 9.42 -55.09 -0.52 -4.38 16 7 C 0.03 0.24 10.81 101.05 1.09 1.33 16 8 C 0.49 5.73 7.13 -10.99 -0.08 5.65 16 9 O -0.53 -8.33 16.51 -14.31 -0.24 -8.56 16 10 N -0.72 -7.38 5.45 -61.47 -0.33 -7.71 16 11 C 0.17 1.85 5.80 -5.19 -0.03 1.82 16 12 C -0.13 -1.59 5.25 -104.62 -0.55 -2.14 16 13 C -0.10 -1.34 9.70 -39.59 -0.38 -1.73 16 14 C -0.11 -1.71 9.06 -39.58 -0.36 -2.06 16 15 C -0.05 -0.88 4.95 -104.63 -0.52 -1.40 16 16 C 0.20 3.92 3.09 -69.08 -0.21 3.71 16 17 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 18 C -0.16 -2.82 9.47 37.16 0.35 -2.47 16 19 N -0.72 -17.42 5.07 -54.55 -0.28 -17.69 16 20 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 24 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C -0.12 -1.71 9.67 -39.59 -0.38 -2.09 16 29 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.40 3.52 8.17 -40.82 -0.33 3.19 16 41 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 44 H 0.13 2.24 6.92 -52.48 -0.36 1.88 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.38 9.78 6.07 -40.82 -0.25 9.53 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.12 1.52 8.04 -52.48 -0.42 1.10 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 422.04 15.07 6.36 6.36 Total: -1.00 -32.29 422.04 -9.87 -42.15 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.87 Total: 9.73 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.69 Total: -10.09 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.11 Total: -52.08 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.76 Total: -12.94 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.29 -9.87 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484561908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.710 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds