Wall clock time and date at job start Sat Apr 11 2020 04:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46783 * 2 1 4 4 C 1.53006 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47142 * 55.00379 * 4 3 2 6 6 O 1.42899 * 109.47213 * 294.99917 * 4 3 2 7 7 C 1.42903 * 113.99629 * 150.00082 * 6 4 3 8 8 C 1.50700 * 109.46887 * 174.99694 * 4 3 2 9 9 O 1.21287 * 119.99933 * 115.00101 * 8 4 3 10 10 N 1.34776 * 120.00542 * 295.00237 * 8 4 3 11 11 C 1.46493 * 120.00207 * 180.02562 * 10 8 4 12 12 C 1.50708 * 109.47250 * 179.97438 * 11 10 8 13 13 C 1.38227 * 119.99873 * 269.72608 * 12 11 10 14 14 C 1.38236 * 119.99937 * 179.80559 * 13 12 11 15 15 C 1.38239 * 119.99882 * 0.42411 * 14 13 12 16 16 C 1.50695 * 120.00007 * 179.78729 * 15 14 13 17 17 H 1.09002 * 109.47072 * 160.01683 * 16 15 14 18 18 C 1.53001 * 109.47583 * 280.02104 * 16 15 14 19 19 N 1.46506 * 109.47284 * 40.02136 * 16 15 14 20 20 C 1.36932 * 119.99997 * 154.99666 * 19 16 15 21 21 H 1.07999 * 120.00107 * 0.02562 * 20 19 16 22 22 C 1.38815 * 120.00111 * 179.97438 * 20 19 16 23 23 N 1.31617 * 119.99493 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00383 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46868 * 89.99802 * 24 22 20 26 26 H 1.48493 * 109.46994 * 210.00283 * 24 22 20 27 27 H 1.48505 * 109.46909 * 330.00387 * 24 22 20 28 28 C 1.38231 * 119.99687 * 359.80845 * 15 14 13 29 29 C 1.38231 * 120.00632 * 0.02562 * 28 15 14 30 30 H 1.09001 * 109.47395 * 300.00035 * 1 2 3 31 31 H 1.09002 * 109.47035 * 60.00483 * 1 2 3 32 32 H 1.09009 * 109.46983 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47043 * 239.99561 * 2 1 3 34 34 H 1.09006 * 109.46591 * 119.99752 * 2 1 3 35 35 H 1.09000 * 109.47689 * 59.99956 * 3 2 1 36 36 H 1.09002 * 109.47677 * 299.99676 * 3 2 1 37 37 H 1.09002 * 109.47382 * 59.99956 * 7 6 4 38 38 H 1.09001 * 109.46938 * 299.99942 * 7 6 4 39 39 H 1.09004 * 109.46926 * 180.02562 * 7 6 4 40 40 H 0.97007 * 119.99870 * 0.02562 * 10 8 4 41 41 H 1.09006 * 109.47562 * 299.99903 * 11 10 8 42 42 H 1.09000 * 109.47280 * 59.99894 * 11 10 8 43 43 H 1.08004 * 120.00343 * 359.97438 * 13 12 11 44 44 H 1.08003 * 120.00326 * 180.20685 * 14 13 12 45 45 H 1.08996 * 109.46842 * 59.99591 * 18 16 15 46 46 H 1.08994 * 109.47617 * 180.02562 * 18 16 15 47 47 H 1.09007 * 109.46670 * 300.00423 * 18 16 15 48 48 H 0.97001 * 119.99804 * 335.00199 * 19 16 15 49 49 H 0.97005 * 119.99642 * 179.97438 * 23 22 20 50 50 H 1.08006 * 119.99905 * 179.97438 * 28 15 14 51 51 H 1.08000 * 120.00613 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 8 4.0458 0.8733 1.2220 7 6 5.3055 0.2094 1.1017 8 6 4.0723 2.8579 -0.1233 9 8 4.6926 3.3632 0.7883 10 7 3.8323 3.5623 -1.2470 11 6 4.3211 4.9380 -1.3676 12 6 3.9234 5.4966 -2.7096 13 6 4.7666 5.3529 -3.7954 14 6 4.4000 5.8618 -5.0273 15 6 3.1941 6.5221 -5.1712 16 6 2.7966 7.0811 -6.5131 17 1 1.7182 7.2379 -6.5363 18 6 3.5109 8.4146 -6.7421 19 7 3.1756 6.1368 -7.5672 20 6 2.5067 6.1400 -8.7620 21 1 1.7001 6.8388 -8.9275 22 6 2.8661 5.2457 -9.7610 23 7 3.8495 4.3944 -9.5595 24 14 1.9542 5.2503 -11.3913 25 1 2.6245 6.1849 -12.3306 26 1 1.9609 3.8812 -11.9661 27 1 0.5523 5.6888 -11.1729 28 6 2.3531 6.6700 -4.0842 29 6 2.7181 6.1582 -2.8531 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 6.0597 0.9196 0.7626 38 1 5.2207 -0.6029 0.3799 39 1 5.5969 -0.1953 2.0710 40 1 3.3359 3.1583 -1.9759 41 1 3.8866 5.5488 -0.5761 42 1 5.4074 4.9467 -1.2782 43 1 5.7106 4.8406 -3.6820 44 1 5.0573 5.7466 -5.8765 45 1 4.5893 8.2578 -6.7188 46 1 3.2231 8.8191 -7.7124 47 1 3.2289 9.1171 -5.9577 48 1 3.9003 5.5094 -7.4186 49 1 4.1004 3.7692 -10.2574 50 1 1.4111 7.1863 -4.1966 51 1 2.0612 6.2741 -2.0037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484561908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:53 Heat of formation + Delta-G solvation = -83.516647 kcal Electronic energy + Delta-G solvation = -28243.957662 eV Core-core repulsion = 24335.141380 eV Total energy + Delta-G solvation = -3908.816282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.28231 -40.46030 -38.60457 -37.38344 -35.98957 -35.47679 -34.10435 -32.11351 -31.79922 -30.81816 -29.89929 -27.49533 -27.09220 -25.91717 -25.08744 -23.77058 -22.92386 -22.14964 -21.50184 -21.07693 -19.38710 -18.71187 -18.13777 -17.28047 -16.90223 -16.78284 -16.34335 -16.18429 -15.96332 -15.64914 -15.52837 -15.44120 -14.98849 -14.95901 -14.49014 -14.31214 -14.28787 -14.18591 -13.77055 -13.57688 -13.41179 -13.25323 -13.04343 -12.99803 -12.83315 -12.71549 -12.43418 -12.36933 -12.12969 -12.06264 -12.01091 -11.96697 -11.60969 -11.59341 -11.51872 -11.49029 -10.99756 -10.39676 -10.17194 -9.78582 -9.52127 -9.01589 -7.93413 -5.21505 0.31131 0.53887 1.48312 1.49362 1.49834 1.57568 2.08973 2.56737 2.77075 2.94699 3.41062 3.60257 3.67953 3.86371 3.87869 3.91778 3.99736 4.05201 4.15982 4.21068 4.29598 4.35545 4.45641 4.50905 4.54507 4.59997 4.67850 4.68850 4.74623 4.77630 4.80079 4.82410 4.92804 5.01025 5.01377 5.07005 5.12451 5.22807 5.26773 5.32101 5.34593 5.42220 5.48721 5.51624 5.56179 5.63779 5.84771 5.98900 6.10394 6.29006 6.48886 7.14856 7.35372 8.09910 8.34184 9.30101 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.002301 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.769882 B =12165.718177 C =13248.561912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.109 4.109 4 C 0.075 3.925 5 H 0.110 0.890 6 O -0.378 6.378 7 C 0.024 3.976 8 C 0.488 3.512 9 O -0.574 6.574 10 N -0.711 5.711 11 C 0.171 3.829 12 C -0.115 4.115 13 C -0.098 4.098 14 C -0.123 4.123 15 C -0.073 4.073 16 C 0.199 3.801 17 H 0.055 0.945 18 C -0.150 4.150 19 N -0.734 5.734 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.970 3.030 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.269 1.269 28 C -0.120 4.120 29 C -0.092 4.092 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.413 0.587 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.039 0.961 46 H 0.042 0.958 47 H 0.069 0.931 48 H 0.375 0.625 49 H 0.250 0.750 50 H 0.138 0.862 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 -5.667 21.291 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.146 4.146 4 C 0.014 3.986 5 H 0.127 0.873 6 O -0.295 6.295 7 C -0.072 4.072 8 C 0.275 3.725 9 O -0.453 6.453 10 N -0.365 5.365 11 C 0.048 3.952 12 C -0.115 4.115 13 C -0.117 4.117 14 C -0.142 4.142 15 C -0.074 4.074 16 C 0.091 3.909 17 H 0.073 0.927 18 C -0.210 4.210 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.800 3.200 25 H -0.217 1.217 26 H -0.224 1.224 27 H -0.194 1.194 28 C -0.139 4.139 29 C -0.110 4.110 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.208 0.792 49 H 0.059 0.941 50 H 0.156 0.844 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.763 -5.253 22.003 22.789 hybrid contribution 0.302 -0.331 -1.829 1.883 sum -2.461 -5.584 20.174 21.077 Atomic orbital electron populations 1.21774 0.95127 1.02182 1.02002 1.21454 0.96344 0.95024 1.02731 1.21713 0.89590 0.99532 1.03811 1.22267 0.97092 0.89507 0.89756 0.87251 1.87960 1.37625 1.72459 1.31452 1.23005 0.84288 0.95820 1.04062 1.21916 0.79201 0.89711 0.81671 1.90691 1.42097 1.72080 1.40388 1.46130 1.57371 1.14461 1.18560 1.20063 0.99428 0.82127 0.93552 1.19720 0.95780 1.01640 0.94386 1.21112 0.99908 0.98891 0.91774 1.20963 0.96878 0.98876 0.97448 1.20317 0.94591 0.96966 0.95526 1.19414 0.97211 0.89450 0.84820 0.92670 1.22269 1.00089 0.97734 1.00888 1.42714 1.41028 1.41189 1.12599 1.19625 1.11696 1.13910 0.91717 0.90542 1.25509 1.00234 0.99033 1.01955 1.69812 1.32796 1.24785 1.34602 0.85185 0.78536 0.76260 0.80065 1.21664 1.22351 1.19381 1.21191 0.99819 1.00753 0.92117 1.21211 0.95769 0.96592 0.97461 0.92881 0.92321 0.92097 0.90970 0.91802 0.91556 0.88560 0.95003 0.91732 0.88214 0.75045 0.90397 0.91230 0.85123 0.87866 0.94163 0.93863 0.91235 0.79194 0.94109 0.84412 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.42 5.83 30.59 0.18 -1.24 16 3 C -0.11 -1.49 4.89 30.59 0.15 -1.34 16 4 C 0.08 1.27 2.51 29.85 0.08 1.34 16 5 H 0.11 1.34 7.79 -2.39 -0.02 1.32 16 6 O -0.38 -7.76 9.42 -129.99 -1.22 -8.99 16 7 C 0.02 0.38 10.81 113.37 1.23 1.60 16 8 C 0.49 10.75 7.13 87.66 0.63 11.38 16 9 O -0.57 -17.69 16.51 15.94 0.26 -17.42 16 10 N -0.71 -12.96 5.45 -466.78 -2.54 -15.51 16 11 C 0.17 3.40 5.80 85.64 0.50 3.90 16 12 C -0.11 -2.50 5.25 -19.86 -0.10 -2.61 16 13 C -0.10 -2.54 9.70 22.27 0.22 -2.33 16 14 C -0.12 -3.99 9.06 22.27 0.20 -3.79 16 15 C -0.07 -2.37 4.95 -19.87 -0.10 -2.47 16 16 C 0.20 7.63 3.09 44.24 0.14 7.77 16 17 H 0.06 2.10 7.94 -2.39 -0.02 2.08 16 18 C -0.15 -5.22 9.47 71.98 0.68 -4.54 16 19 N -0.73 -36.07 5.07 -326.49 -1.66 -37.73 16 20 C -0.24 -12.88 9.93 84.04 0.83 -12.05 16 21 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 22 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 23 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 24 Si 0.97 45.37 29.55 68.60 2.03 47.39 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 C -0.12 -3.10 9.67 22.27 0.22 -2.88 16 29 C -0.09 -1.95 9.70 22.27 0.22 -1.74 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.87 7.82 -2.38 -0.02 0.85 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.04 7.77 -2.39 -0.02 1.02 16 37 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 39 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.41 6.08 8.17 -92.70 -0.76 5.32 16 41 H 0.08 1.54 8.09 -2.38 -0.02 1.52 16 42 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 43 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.10 3.82 6.92 -2.91 -0.02 3.80 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.37 19.72 6.07 -92.71 -0.56 19.16 16 49 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 50 H 0.14 3.04 8.04 -2.91 -0.02 3.02 16 51 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -70.52 422.04 2.97 -67.55 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.41 Total: 36.52 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 6.23 Total: -13.81 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -3.92 Total: -111.25 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.96 Total: -26.41 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.52 2.97 -67.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484561908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.966 kcal (2) G-P(sol) polarization free energy of solvation -70.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds