Wall clock time and date at job start Sat Apr 11 2020 04:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46896 * 111.00328 * 2 1 4 4 C 1.53000 * 109.46615 * 293.95267 * 3 2 1 5 5 N 1.46508 * 109.46966 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99767 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00390 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99342 * 180.02562 * 6 5 4 9 9 C 1.53009 * 109.46929 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47286 * 299.99923 * 8 6 5 11 11 C 1.52998 * 109.47843 * 60.00396 * 8 6 5 12 12 C 1.46908 * 110.99847 * 123.95438 * 2 1 3 13 13 C 1.50694 * 109.47380 * 66.04280 * 12 2 1 14 14 C 1.38292 * 119.93194 * 269.72934 * 13 12 2 15 15 C 1.38105 * 120.06997 * 179.72696 * 14 13 12 16 16 C 1.38880 * 119.92861 * 0.56580 * 15 14 13 17 17 O 1.35750 * 120.06847 * 179.68686 * 16 15 14 18 18 C 1.34825 * 116.99901 * 174.49053 * 17 16 15 19 19 H 1.08004 * 120.00181 * 5.04694 * 18 17 16 20 20 C 1.38659 * 120.00045 * 185.05605 * 18 17 16 21 21 N 1.31561 * 119.99751 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99986 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47069 * 90.00135 * 22 20 18 24 24 H 1.48494 * 109.47375 * 210.00471 * 22 20 18 25 25 H 1.48507 * 109.46926 * 330.00314 * 22 20 18 26 26 C 1.38885 * 119.86093 * 359.70546 * 16 15 14 27 27 C 1.38101 * 119.93180 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47373 * 60.00288 * 1 2 3 29 29 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47266 * 300.00260 * 1 2 3 31 31 H 1.08994 * 109.47248 * 53.94966 * 3 2 1 32 32 H 1.08995 * 109.47316 * 173.95432 * 3 2 1 33 33 H 1.08998 * 109.47533 * 299.99678 * 4 3 2 34 34 H 1.08996 * 109.47666 * 60.00088 * 4 3 2 35 35 H 0.97001 * 119.99708 * 0.02562 * 5 4 3 36 36 H 1.09005 * 109.46999 * 59.99784 * 9 8 6 37 37 H 1.08993 * 109.47063 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.46651 * 300.00041 * 9 8 6 39 39 H 1.08995 * 109.46779 * 60.00368 * 10 8 6 40 40 H 1.08998 * 109.47339 * 180.02562 * 10 8 6 41 41 H 1.09005 * 109.47166 * 300.00537 * 10 8 6 42 42 H 1.09002 * 109.47109 * 59.99118 * 11 8 6 43 43 H 1.08993 * 109.47345 * 180.02562 * 11 8 6 44 44 H 1.09004 * 109.46719 * 300.00043 * 11 8 6 45 45 H 1.09000 * 109.46553 * 186.04545 * 12 2 1 46 46 H 1.09001 * 109.46988 * 306.04104 * 12 2 1 47 47 H 1.08000 * 119.96801 * 359.97383 * 14 13 12 48 48 H 1.08005 * 120.03533 * 180.27126 * 15 14 13 49 49 H 0.96999 * 119.99524 * 179.97438 * 21 20 18 50 50 H 1.07999 * 120.03044 * 179.97438 * 26 16 15 51 51 H 1.07999 * 119.96690 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0573 -1.3183 5 7 2.1560 3.4252 -1.3181 6 6 1.9554 4.2240 -2.3851 7 8 1.3404 3.8105 -3.3451 8 6 2.4955 5.6308 -2.3850 9 6 2.1315 6.3169 -3.7034 10 6 1.8854 6.4114 -1.2190 11 6 4.0174 5.5931 -2.2326 12 6 1.9954 -0.7660 1.1377 13 6 1.6368 -2.2204 0.9730 14 6 0.4528 -2.7031 1.4998 15 6 0.1187 -4.0343 1.3457 16 6 0.9787 -4.8909 0.6710 17 8 0.6561 -6.2012 0.5234 18 6 1.4773 -6.9517 -0.2383 19 1 2.3886 -6.5258 -0.6314 20 6 1.1518 -8.2704 -0.5171 21 7 1.9529 -9.0025 -1.2608 22 14 -0.4242 -9.0073 0.1631 23 1 -1.5299 -8.7901 -0.8040 24 1 -0.2358 -10.4641 0.3807 25 1 -0.7596 -8.3534 1.4536 26 6 2.1698 -4.4043 0.1480 27 6 2.4955 -3.0709 0.3006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 0.8308 32 1 3.0797 1.3443 0.1082 33 1 2.0658 1.5014 -2.1492 34 1 0.5472 2.0844 -1.4266 35 1 2.6483 3.7558 -0.5505 36 1 1.0471 6.3439 -3.8115 37 1 2.5217 7.3346 -3.7032 38 1 2.5658 5.7609 -4.5343 39 1 2.1444 5.9228 -0.2798 40 1 2.2757 7.4291 -1.2193 41 1 0.8012 6.4384 -1.3276 42 1 4.4521 5.0370 -3.0633 43 1 4.4079 6.6106 -2.2322 44 1 4.2764 5.1044 -1.2933 45 1 3.0796 -0.6611 1.1756 46 1 1.5611 -0.3872 2.0629 47 1 -0.2133 -2.0376 2.0289 48 1 -0.8083 -4.4097 1.7536 49 1 1.7253 -9.9251 -1.4556 50 1 2.8408 -5.0681 -0.3768 51 1 3.4217 -2.6920 -0.1055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492823902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:43 Heat of formation + Delta-G solvation = -45.305068 kcal Electronic energy + Delta-G solvation = -27884.925969 eV Core-core repulsion = 23977.766665 eV Total energy + Delta-G solvation = -3907.159304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47041 -39.36213 -38.09544 -36.49987 -35.94933 -34.79314 -32.41773 -30.78519 -30.29776 -28.77945 -27.85496 -27.51110 -27.04249 -25.36772 -24.16147 -22.67746 -22.07222 -21.41320 -20.26755 -19.60775 -17.89808 -17.27995 -17.10595 -16.63299 -16.11833 -15.38936 -15.30321 -15.15272 -14.80132 -14.41869 -14.29471 -14.08396 -13.98471 -13.79233 -13.74231 -13.36147 -13.27581 -12.83517 -12.71828 -12.66333 -12.47575 -12.33990 -12.24113 -12.17924 -12.06576 -11.69003 -11.56395 -11.49603 -11.40243 -11.38657 -11.18407 -10.74956 -10.73044 -10.67135 -10.15498 -9.95569 -9.38671 -9.32774 -8.87347 -8.41496 -8.24465 -7.32637 -6.41872 -4.08415 2.10947 2.15540 2.37599 2.80138 3.21688 3.25659 3.39716 3.95147 4.20714 4.23318 4.28820 4.40152 4.55363 4.60587 4.76572 4.84233 4.84931 5.04151 5.10417 5.11361 5.13440 5.15732 5.21667 5.27829 5.34450 5.42768 5.44745 5.46902 5.50330 5.58037 5.63247 5.66260 5.72265 5.73328 5.78912 5.81123 5.88141 6.05861 6.12269 6.13472 6.32670 6.55607 6.77570 6.91657 6.94230 7.08082 7.18256 7.25108 7.32635 7.60785 7.80134 7.94557 8.03476 8.93314 9.55531 10.65702 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.001726 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.306481 B =16215.478887 C =16535.214128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.729 5.729 6 C 0.521 3.479 7 O -0.536 6.536 8 C -0.087 4.087 9 C -0.128 4.128 10 C -0.140 4.140 11 C -0.141 4.141 12 C 0.114 3.886 13 C -0.173 4.173 14 C -0.070 4.070 15 C -0.194 4.194 16 C 0.162 3.838 17 O -0.217 6.217 18 C -0.389 4.389 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.222 4.222 27 C -0.050 4.050 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.279 0.721 50 H 0.133 0.867 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 30.248 3.623 30.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.256 5.256 3 C -0.083 4.083 4 C -0.004 4.004 5 N -0.381 5.381 6 C 0.307 3.693 7 O -0.412 6.412 8 C -0.091 4.091 9 C -0.186 4.186 10 C -0.198 4.198 11 C -0.198 4.198 12 C -0.013 4.013 13 C -0.174 4.174 14 C -0.089 4.089 15 C -0.213 4.213 16 C 0.109 3.891 17 O -0.122 6.122 18 C -0.465 4.465 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.241 4.241 27 C -0.069 4.069 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.052 0.948 47 H 0.127 0.873 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.150 0.850 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.653 29.327 2.480 29.478 hybrid contribution -0.533 -0.009 1.241 1.350 sum 1.120 29.318 3.720 29.574 Atomic orbital electron populations 1.22537 0.87133 1.03401 0.99970 1.61914 1.08371 1.11127 1.44211 1.22223 1.00720 0.89688 0.95713 1.21353 0.99538 0.80990 0.98519 1.45956 1.58136 1.14251 1.19796 1.20565 0.79435 0.87153 0.82146 1.90721 1.40633 1.75640 1.34158 1.20836 0.97165 0.92350 0.98716 1.21667 1.02442 0.99504 0.94963 1.21870 1.01306 1.00323 0.96287 1.21872 0.92551 1.02988 1.02416 1.20825 0.99379 0.90842 0.90209 1.19085 0.97498 0.93912 1.06892 1.20477 0.95616 0.94158 0.98635 1.20164 1.00791 0.92918 1.07426 1.19139 0.92580 0.84127 0.93237 1.83568 1.50232 1.15899 1.62530 1.20776 1.03904 0.93698 1.28111 0.87581 1.24474 0.98800 0.95103 0.95643 1.69650 1.37050 1.09175 1.35766 0.86179 0.82268 0.77876 0.80558 1.19879 1.20787 1.18407 1.21284 0.99067 0.96337 1.07432 1.20615 0.98020 0.92557 0.95695 0.91538 0.89949 0.95966 0.94572 0.90284 0.90343 0.91321 0.76801 0.91907 0.92000 0.91823 0.92188 0.91259 0.92001 0.91873 0.91272 0.92144 0.90695 0.94766 0.87338 0.86636 0.91047 0.84968 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.98 60.06 0.54 0.74 16 2 N -0.53 -6.24 4.75 -244.38 -1.16 -7.40 16 3 C 0.05 0.40 5.07 -3.83 -0.02 0.38 16 4 C 0.12 1.16 5.60 -4.04 -0.02 1.14 16 5 N -0.73 -5.75 5.34 -60.29 -0.32 -6.07 16 6 C 0.52 5.14 6.48 -10.98 -0.07 5.07 16 7 O -0.54 -7.72 15.98 5.56 0.09 -7.63 16 8 C -0.09 -0.57 0.87 -155.65 -0.14 -0.71 16 9 C -0.13 -0.91 7.76 37.16 0.29 -0.62 16 10 C -0.14 -0.66 8.37 37.16 0.31 -0.35 16 11 C -0.14 -0.69 8.37 37.16 0.31 -0.38 16 12 C 0.11 1.39 5.12 -4.97 -0.03 1.37 16 13 C -0.17 -2.73 4.89 -104.58 -0.51 -3.24 16 14 C -0.07 -1.14 7.90 -39.61 -0.31 -1.45 16 15 C -0.19 -3.76 9.99 -39.39 -0.39 -4.16 16 16 C 0.16 3.70 6.65 -39.10 -0.26 3.44 16 17 O -0.22 -5.73 8.59 0.06 0.00 -5.73 16 18 C -0.39 -10.98 9.95 30.89 0.31 -10.67 16 19 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 20 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 21 N -0.88 -25.41 13.96 55.48 0.77 -24.63 16 22 Si 0.91 21.71 28.62 -169.99 -4.86 16.84 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.22 -4.75 9.17 -39.39 -0.36 -5.12 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 28 H 0.07 0.73 6.47 -51.93 -0.34 0.40 16 29 H 0.08 1.10 5.90 -51.93 -0.31 0.79 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.75 6.55 -51.93 -0.34 0.41 16 35 H 0.40 2.00 7.31 -40.82 -0.30 1.70 16 36 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.06 0.23 7.56 -51.93 -0.39 -0.16 16 45 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 46 H 0.03 0.38 8.06 -51.93 -0.42 -0.03 16 47 H 0.11 1.46 8.00 -52.49 -0.42 1.04 16 48 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 49 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 51 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 408.96 15.07 6.16 6.16 Total: -1.00 -32.02 408.96 -8.67 -40.68 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.51 Total: 1.93 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.84 Total: -14.15 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.71 Total: -38.11 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.86 Total: 16.84 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.02 -8.67 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492823902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.620 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds