Wall clock time and date at job start Sat Apr 11 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6 10 10 O 1.21283 * 120.00686 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99672 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99937 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47284 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46927 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.47498 * 304.99860 * 14 13 12 16 16 N 1.46491 * 109.47197 * 65.00396 * 14 13 12 17 17 C 1.36941 * 119.99856 * 204.99685 * 16 14 13 18 18 H 1.07993 * 120.00083 * 0.02562 * 17 16 14 19 19 C 1.38821 * 120.00053 * 179.97438 * 17 16 14 20 20 N 1.31627 * 119.99738 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47348 * 60.00001 * 21 19 17 23 23 H 1.48504 * 109.47096 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47380 * 299.99626 * 21 19 17 25 25 C 1.53002 * 109.46759 * 185.00123 * 14 13 12 26 26 C 1.52999 * 109.47089 * 59.99840 * 25 14 13 27 27 C 1.53006 * 109.47230 * 180.02562 * 25 14 13 28 28 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 29 29 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 30 30 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 31 31 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 33 33 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 34 34 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 35 35 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 36 36 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 37 37 H 0.96992 * 120.00180 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47462 * 300.00398 * 12 11 9 39 39 H 1.09001 * 109.46867 * 60.00174 * 12 11 9 40 40 H 1.09003 * 109.47255 * 300.00285 * 13 12 11 41 41 H 1.08994 * 109.46743 * 60.00084 * 13 12 11 42 42 H 0.97000 * 120.00483 * 24.99705 * 16 14 13 43 43 H 0.97002 * 119.99419 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.46900 * 300.00103 * 25 14 13 45 45 H 1.08999 * 109.47035 * 60.00345 * 26 25 14 46 46 H 1.09008 * 109.47046 * 179.97438 * 26 25 14 47 47 H 1.08998 * 109.47536 * 299.99819 * 26 25 14 48 48 H 1.08993 * 109.47010 * 59.99768 * 27 25 14 49 49 H 1.08995 * 109.46916 * 180.02562 * 27 25 14 50 50 H 1.09003 * 109.46273 * 300.00112 * 27 25 14 51 51 H 1.08006 * 120.02917 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0624 2.6249 -1.4206 10 8 5.2755 2.5818 -2.3425 11 7 7.3856 2.6967 -1.6668 12 6 7.8734 2.7220 -3.0480 13 6 9.4011 2.8045 -3.0479 14 6 9.9104 2.8316 -4.4904 15 1 9.5219 1.9674 -5.0293 16 7 9.4561 4.0605 -5.1457 17 6 9.3249 4.1016 -6.5082 18 1 9.5560 3.2281 -7.0995 19 6 8.8938 5.2660 -7.1291 20 7 8.6107 6.3303 -6.4082 21 14 8.7142 5.3219 -8.9876 22 1 7.7292 4.2985 -9.4207 23 1 8.2429 6.6687 -9.3990 24 1 10.0283 5.0432 -9.6205 25 6 11.4398 2.7882 -4.4921 26 6 11.9144 1.5047 -3.8077 27 6 11.9493 2.8159 -5.9346 28 6 3.4311 1.2849 -0.0001 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2128 2.3203 -0.0106 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0002 35 1 5.8756 3.5067 0.5138 36 1 5.9714 1.7293 0.5143 37 1 8.0149 2.7315 -0.9295 38 1 7.5589 1.8133 -3.5611 39 1 7.4623 3.5905 -3.5625 40 1 9.7160 3.7131 -2.5346 41 1 9.8118 1.9357 -2.5335 42 1 9.2481 4.8450 -4.6145 43 1 8.3092 7.1437 -6.8421 44 1 11.8284 3.6523 -3.9533 45 1 11.5258 0.6406 -4.3465 46 1 13.0040 1.4736 -3.8093 47 1 11.5515 1.4854 -2.7800 48 1 11.6112 3.7304 -6.4218 49 1 13.0387 2.7846 -5.9358 50 1 11.5606 1.9520 -6.4737 51 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506993003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:44 Heat of formation + Delta-G solvation = -55.257099 kcal Electronic energy + Delta-G solvation = -28281.880715 eV Core-core repulsion = 24374.289859 eV Total energy + Delta-G solvation = -3907.590856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40515 -39.42566 -37.70798 -37.27745 -34.60061 -33.02596 -32.79678 -31.14605 -30.62833 -29.53151 -27.91632 -27.28044 -26.25536 -25.00458 -22.96967 -22.67782 -21.68270 -21.03458 -20.23535 -19.15503 -17.96378 -17.17949 -16.79711 -16.48726 -16.14596 -15.91045 -15.65314 -15.36635 -14.93495 -14.31318 -14.08312 -13.92585 -13.83943 -13.63304 -13.44615 -13.35149 -13.10718 -12.77266 -12.62693 -12.22475 -12.02886 -11.99255 -11.67432 -11.61600 -11.58752 -11.24806 -11.15742 -10.98496 -10.87844 -10.75202 -10.55248 -10.40912 -10.24635 -10.04095 -9.94946 -9.63228 -9.42050 -8.92735 -8.81412 -8.73361 -8.30315 -6.90032 -5.71897 -2.99255 1.17334 1.36689 2.84008 3.05682 3.33825 3.47462 3.52740 3.52820 3.77143 4.49906 4.62979 4.63557 4.83932 4.87969 4.89036 4.98591 5.05458 5.18925 5.22508 5.26545 5.29494 5.39944 5.41724 5.51550 5.55656 5.59471 5.73356 5.73708 5.89961 5.94597 6.04977 6.15525 6.18818 6.26725 6.29545 6.30904 6.41758 6.46134 6.47570 6.59572 6.61111 6.70018 6.73491 6.78523 6.85593 7.15054 7.23713 7.35599 7.70672 7.75724 8.44903 8.46541 9.57855 10.14724 10.49450 11.50609 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012183 B = 0.002323 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.778754 B =12049.386142 C =13320.985565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.140 4.140 7 C -0.024 4.024 8 C -0.104 4.104 9 C 0.508 3.492 10 O -0.527 6.527 11 N -0.730 5.730 12 C 0.123 3.877 13 C -0.135 4.135 14 C 0.185 3.815 15 H 0.048 0.952 16 N -0.721 5.721 17 C -0.231 4.231 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.901 3.099 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.111 4.111 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.137 4.137 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.028 0.972 50 H 0.039 0.961 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 -10.171 19.135 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.228 4.228 5 C -0.098 4.098 6 C -0.158 4.158 7 C -0.025 4.025 8 C -0.144 4.144 9 C 0.293 3.707 10 O -0.402 6.402 11 N -0.382 5.382 12 C 0.000 4.000 13 C -0.174 4.174 14 C 0.074 3.926 15 H 0.066 0.934 16 N -0.362 5.362 17 C -0.362 4.362 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.133 4.133 26 C -0.204 4.204 27 C -0.198 4.198 28 C -0.155 4.155 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.229 0.771 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.048 0.952 50 H 0.059 0.941 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.974 -10.412 18.240 22.839 hybrid contribution -0.058 0.546 -0.616 0.825 sum -9.031 -9.865 17.624 22.125 Atomic orbital electron populations 1.23032 0.78540 1.03805 1.01312 1.86062 1.21270 1.27053 1.88895 1.18920 0.92204 0.84096 0.96806 1.21192 0.99841 0.92478 1.09310 1.20881 0.94508 0.96969 0.97411 1.20927 0.93841 0.97953 1.03071 1.19042 0.93810 0.92556 0.97078 1.20707 0.92783 1.05299 0.95581 1.20391 0.82520 0.76909 0.90857 1.90773 1.55118 1.48222 1.46112 1.46116 1.06832 1.75489 1.09765 1.21433 0.94279 1.03290 0.81006 1.22123 0.93876 1.01703 0.99665 1.20186 0.91035 0.91433 0.89908 0.93355 1.42429 1.79227 1.10035 1.04464 1.19146 1.36929 0.96914 0.83235 0.91114 1.24709 1.02432 0.96289 0.97509 1.69645 1.51924 1.02451 1.34051 0.86351 0.77777 0.76607 0.85992 1.21312 1.21834 1.21353 1.21776 0.98756 0.96212 0.96508 1.21935 0.99954 0.98598 0.99944 1.21832 0.97807 1.03623 0.96507 1.20188 0.91381 0.97985 1.05969 0.92767 0.92628 0.88346 0.85682 0.85734 0.85850 0.87703 0.87918 0.77129 0.92021 0.89827 0.91694 0.91579 0.78320 0.93578 0.92222 0.93303 0.93854 0.93206 0.89488 0.95245 0.94142 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.65 10.50 -19.44 -0.20 -3.85 16 3 C 0.12 1.53 6.69 -39.22 -0.26 1.27 16 4 C -0.21 -2.29 9.04 -39.43 -0.36 -2.64 16 5 C -0.08 -0.87 10.04 -39.60 -0.40 -1.27 16 6 C -0.14 -1.65 9.70 -39.56 -0.38 -2.04 16 7 C -0.02 -0.29 4.37 -104.65 -0.46 -0.75 16 8 C -0.10 -1.04 5.83 -29.04 -0.17 -1.21 16 9 C 0.51 7.38 7.82 -10.98 -0.09 7.29 16 10 O -0.53 -10.46 16.03 5.56 0.09 -10.37 16 11 N -0.73 -9.50 5.56 -60.30 -0.33 -9.84 16 12 C 0.12 2.03 5.56 -4.04 -0.02 2.01 16 13 C -0.14 -2.02 4.65 -26.73 -0.12 -2.14 16 14 C 0.19 3.44 2.02 -67.93 -0.14 3.31 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -17.03 4.45 -53.43 -0.24 -17.27 16 17 C -0.23 -6.15 7.57 -15.05 -0.11 -6.27 16 18 H 0.07 1.85 7.40 -52.49 -0.39 1.46 16 19 C -0.01 -0.38 5.50 -17.42 -0.10 -0.48 16 20 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 21 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.11 -1.88 2.69 -90.62 -0.24 -2.13 16 26 C -0.15 -1.98 8.85 37.16 0.33 -1.65 16 27 C -0.14 -2.59 8.26 37.16 0.31 -2.28 16 28 C -0.14 -1.72 9.64 -39.44 -0.38 -2.10 16 29 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 30 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.74 7.75 -51.93 -0.40 1.34 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 42 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 47 H 0.05 0.59 6.32 -51.93 -0.33 0.26 16 48 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 411.93 15.07 6.21 6.21 Total: -1.00 -33.99 411.93 -8.97 -42.96 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.59 Total: 11.75 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.60 Total: -9.88 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.15 Total: -54.30 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.11 Total: -14.22 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.99 -8.97 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506993003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.299 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds