Wall clock time and date at job start Sat Apr 11 2020 04:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47094 * 2 1 4 4 C 1.52997 * 109.47360 * 119.99819 * 2 1 3 5 5 H 1.08998 * 109.47255 * 304.59212 * 4 2 1 6 6 C 1.50699 * 109.47232 * 184.58331 * 4 2 1 7 7 O 1.21274 * 120.00428 * 325.29857 * 6 4 2 8 8 N 1.34779 * 119.99452 * 145.29442 * 6 4 2 9 9 C 1.46496 * 120.00488 * 5.11082 * 8 6 4 10 10 C 1.46500 * 119.99563 * 185.11639 * 8 6 4 11 11 C 1.52996 * 109.47301 * 90.00034 * 10 8 6 12 12 H 1.09001 * 109.47629 * 59.99954 * 11 10 8 13 13 O 1.42901 * 109.47042 * 299.99480 * 11 10 8 14 14 C 1.53006 * 109.47185 * 179.97438 * 11 10 8 15 15 N 1.46497 * 109.47073 * 184.99672 * 14 11 10 16 16 C 1.36945 * 119.99633 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00369 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00140 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00128 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47142 * 89.99946 * 20 18 16 22 22 H 1.48496 * 109.47339 * 210.00196 * 20 18 16 23 23 H 1.48504 * 109.47098 * 330.00444 * 20 18 16 24 24 C 1.50701 * 109.46899 * 64.58535 * 4 2 1 25 25 C 1.38232 * 120.00411 * 240.00269 * 24 4 2 26 26 C 1.38236 * 120.00204 * 179.97438 * 25 24 4 27 27 C 1.38231 * 120.00152 * 359.97438 * 26 25 24 28 28 C 1.38240 * 119.99882 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00019 * 0.07163 * 28 27 26 30 30 H 1.09007 * 109.47133 * 60.00157 * 1 2 3 31 31 H 1.09003 * 109.46991 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47339 * 299.99768 * 1 2 3 33 33 H 1.09004 * 109.47303 * 240.00049 * 2 1 3 34 34 H 1.08991 * 109.46834 * 185.09099 * 3 2 1 35 35 H 1.08997 * 109.46557 * 305.09122 * 3 2 1 36 36 H 1.09000 * 109.46841 * 65.09106 * 3 2 1 37 37 H 1.08997 * 109.46915 * 84.46862 * 9 8 6 38 38 H 1.08994 * 109.47574 * 204.47045 * 9 8 6 39 39 H 1.09002 * 109.46971 * 324.47245 * 9 8 6 40 40 H 1.09009 * 109.46952 * 209.99847 * 10 8 6 41 41 H 1.08995 * 109.47232 * 329.99461 * 10 8 6 42 42 H 0.96705 * 113.99951 * 300.00360 * 13 11 10 43 43 H 1.08999 * 109.46876 * 304.99942 * 14 11 10 44 44 H 1.09005 * 109.46868 * 64.99783 * 14 11 10 45 45 H 0.96998 * 120.00617 * 0.02562 * 15 14 11 46 46 H 0.97000 * 120.00208 * 179.97438 * 19 18 16 47 47 H 1.08000 * 119.99515 * 359.97291 * 25 24 4 48 48 H 1.08001 * 119.99702 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00329 * 179.72573 * 27 26 25 50 50 H 1.07994 * 119.99780 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.00040 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6111 -0.2571 2.1373 6 6 3.5427 -0.6236 1.3073 7 8 4.1916 -0.6411 0.2829 8 7 4.1655 -0.5168 2.4978 9 6 3.3933 -0.6081 3.7393 10 6 5.6148 -0.3094 2.5502 11 6 5.9158 1.1907 2.5469 12 1 5.4504 1.6566 3.4155 13 8 5.3933 1.7787 1.3538 14 6 7.4294 1.4073 2.6023 15 7 7.7137 2.8397 2.7194 16 6 9.0097 3.2773 2.7856 17 1 9.8221 2.5665 2.7511 18 6 9.2791 4.6344 2.8971 19 7 10.5246 5.0551 2.9603 20 14 7.8739 5.8639 2.9562 21 1 7.4660 6.0820 4.3673 22 1 8.3176 7.1515 2.3644 23 1 6.7209 5.3353 2.1838 24 6 1.6326 -2.1710 1.1938 25 6 0.8317 -2.7025 2.1872 26 6 0.4575 -4.0322 2.1360 27 6 0.8838 -4.8305 1.0911 28 6 1.6839 -4.2988 0.0970 29 6 2.0588 -2.9693 0.1487 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1261 1.4439 -0.0912 35 1 1.6041 1.9820 -0.8409 36 1 1.7530 1.9294 0.9321 37 1 3.2631 -1.6559 4.0100 38 1 3.9254 -0.0902 4.5372 39 1 2.4167 -0.1462 3.5945 40 1 6.0134 -0.7579 3.4602 41 1 6.0802 -0.7752 1.6816 42 1 5.7638 1.4115 0.5395 43 1 7.8400 0.8836 3.4655 44 1 7.8854 1.0197 1.6912 45 1 6.9841 3.4781 2.7501 46 1 10.7129 6.0035 3.0378 47 1 0.4983 -2.0787 3.0034 48 1 -0.1679 -4.4475 2.9124 49 1 0.5952 -5.8705 1.0534 50 1 2.0173 -4.9225 -0.7192 51 1 2.6842 -2.5540 -0.6277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507506421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:46 Heat of formation + Delta-G solvation = -52.715988 kcal Electronic energy + Delta-G solvation = -29992.730825 eV Core-core repulsion = 26085.250159 eV Total energy + Delta-G solvation = -3907.480665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87703 -39.14231 -37.53273 -35.94573 -35.33182 -34.12736 -31.88984 -31.44060 -31.17148 -29.91993 -27.74195 -27.08214 -27.03684 -25.19502 -22.99741 -22.56760 -21.93260 -21.25398 -20.56316 -18.92643 -17.69728 -17.37434 -17.30707 -16.50821 -16.06811 -15.62985 -15.32926 -15.01308 -14.87338 -14.52198 -14.41264 -14.28364 -13.70548 -13.67762 -13.56455 -13.26090 -12.94017 -12.83960 -12.75337 -12.68181 -12.46957 -12.27931 -12.26271 -12.22741 -11.74634 -11.53380 -11.37749 -11.24321 -11.14894 -10.92774 -10.84912 -10.79815 -10.70741 -10.15818 -9.94726 -9.70841 -9.55148 -9.20029 -8.92107 -8.89605 -8.55920 -7.21628 -5.75062 -3.10432 1.01759 1.12087 2.60616 2.88600 3.41367 3.48674 3.48971 3.49448 4.29871 4.39486 4.50169 4.62806 4.64914 4.71146 4.74845 4.77605 4.87248 4.89376 4.95691 5.10249 5.11929 5.19590 5.24688 5.30580 5.34860 5.46629 5.49890 5.52396 5.57038 5.59366 5.63507 5.65751 5.75146 5.77934 5.82457 5.85679 5.94787 5.98551 6.16379 6.17118 6.24808 6.31012 6.35780 6.42439 6.46214 6.65079 6.70133 7.29340 7.98366 8.06484 8.15824 8.43871 9.23814 9.96161 10.16428 11.43169 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002686 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.455391 B =10420.180200 C =10985.796794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.153 4.153 4 C -0.065 4.065 5 H 0.096 0.904 6 C 0.536 3.464 7 O -0.532 6.532 8 N -0.608 5.608 9 C 0.075 3.925 10 C 0.084 3.916 11 C 0.083 3.917 12 H 0.094 0.906 13 O -0.551 6.551 14 C 0.131 3.869 15 N -0.749 5.749 16 C -0.245 4.245 17 H 0.089 0.911 18 C 0.005 3.995 19 N -0.935 5.935 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.272 1.272 24 C -0.070 4.070 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.104 4.104 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.376 0.624 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.365 0.635 46 H 0.259 0.741 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.460 -19.745 -1.548 32.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 C -0.210 4.210 4 C -0.086 4.086 5 H 0.114 0.886 6 C 0.324 3.676 7 O -0.408 6.408 8 N -0.341 5.341 9 C -0.068 4.068 10 C -0.039 4.039 11 C 0.022 3.978 12 H 0.112 0.888 13 O -0.356 6.356 14 C 0.002 3.998 15 N -0.395 5.395 16 C -0.375 4.375 17 H 0.107 0.893 18 C -0.191 4.191 19 N -0.583 5.583 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.198 1.198 24 C -0.070 4.070 25 C -0.131 4.131 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.122 4.122 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.223 0.777 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.199 0.801 46 H 0.069 0.931 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.194 -19.406 -1.651 31.844 hybrid contribution -0.510 0.618 -0.032 0.802 sum -25.704 -18.788 -1.683 31.883 Atomic orbital electron populations 1.21848 0.94792 1.01767 1.01871 1.20984 0.95416 0.96544 0.96244 1.21922 1.03088 0.94558 1.01443 1.20500 0.92915 0.93606 1.01613 0.88557 1.20175 0.89315 0.75040 0.83041 1.90642 1.67095 1.49708 1.33380 1.47675 1.08047 1.72226 1.06117 1.21869 0.96699 1.01633 0.86606 1.22235 0.80072 0.97579 1.04046 1.22533 0.94817 0.91423 0.88984 0.88782 1.86508 1.68346 1.65315 1.15471 1.21211 0.91909 0.87523 0.99150 1.42586 1.05253 1.01334 1.90337 1.19053 0.83263 0.92457 1.42737 0.89327 1.24663 0.95905 0.96645 1.01887 1.69704 1.16933 1.14413 1.57202 0.86542 0.82747 0.81546 0.77825 1.21174 1.21757 1.19813 1.19433 0.98213 0.93851 0.95523 1.21037 0.98272 0.95527 0.98286 1.21101 1.00334 0.93911 0.98537 1.21173 0.98305 0.99788 0.94764 1.21170 0.98190 0.95320 0.98972 1.21183 0.99116 0.93739 0.98190 0.92369 0.92579 0.92741 0.90079 0.90715 0.92633 0.93072 0.92513 0.90552 0.91213 0.89611 0.89233 0.77665 0.94926 0.95275 0.80144 0.93066 0.86078 0.86062 0.86207 0.86043 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.00 37.16 0.33 -0.85 16 2 C -0.07 -0.73 2.03 -90.62 -0.18 -0.92 16 3 C -0.15 -1.74 8.75 37.16 0.33 -1.42 16 4 C -0.07 -0.64 1.44 -92.92 -0.13 -0.77 16 5 H 0.10 0.81 5.55 -51.93 -0.29 0.52 16 6 C 0.54 6.62 4.76 -10.98 -0.05 6.57 16 7 O -0.53 -8.04 13.64 3.82 0.05 -7.99 16 8 N -0.61 -6.88 2.83 -181.58 -0.51 -7.39 16 9 C 0.08 0.60 10.23 59.84 0.61 1.22 16 10 C 0.08 1.04 5.15 -4.04 -0.02 1.02 16 11 C 0.08 1.28 3.27 -26.73 -0.09 1.20 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 13 O -0.55 -9.40 12.16 -36.97 -0.45 -9.85 16 14 C 0.13 2.49 5.90 -4.04 -0.02 2.47 16 15 N -0.75 -18.33 5.35 -59.90 -0.32 -18.65 16 16 C -0.25 -7.12 10.47 -15.06 -0.16 -7.28 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.92 13.97 55.49 0.78 -29.14 16 20 Si 0.88 22.84 27.74 -169.99 -4.71 18.13 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 23 H -0.27 -6.82 6.52 56.52 0.37 -6.45 16 24 C -0.07 -0.64 3.73 -104.62 -0.39 -1.03 16 25 C -0.11 -0.87 9.67 -39.58 -0.38 -1.25 16 26 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 27 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 29 C -0.10 -1.04 8.75 -39.58 -0.35 -1.39 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.91 7.10 -51.93 -0.37 0.54 16 34 H 0.07 1.05 6.59 -51.93 -0.34 0.71 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.56 8.03 -51.93 -0.42 0.15 16 39 H 0.07 0.47 5.89 -51.93 -0.31 0.17 16 40 H 0.09 0.90 8.07 -51.92 -0.42 0.48 16 41 H 0.09 1.21 7.36 -51.93 -0.38 0.82 16 42 H 0.38 6.10 8.62 45.56 0.39 6.50 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.37 8.97 5.53 -40.82 -0.23 8.75 16 46 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 47 H 0.12 0.70 7.95 -52.49 -0.42 0.28 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.13 1.41 7.07 -52.49 -0.37 1.04 16 LS Contribution 406.01 15.07 6.12 6.12 Total: -1.00 -34.62 406.01 -8.62 -43.24 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.77 Total: 11.92 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.80 Total: -6.38 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.06 Total: -55.19 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.40 Total: -17.84 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.62 -8.62 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507506421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.476 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds