Wall clock time and date at job start Sat Apr 11 2020 04:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46796 * 2 1 4 4 C 1.53004 * 109.46796 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47090 * 179.97438 * 4 3 2 6 6 C 1.35706 * 117.00439 * 180.02562 * 5 4 3 7 7 C 1.38997 * 119.91717 * 180.02562 * 6 5 4 8 8 C 1.37704 * 120.08941 * 179.97438 * 7 6 5 9 9 C 1.39727 * 119.91109 * 359.97438 * 8 7 6 10 10 C 1.47606 * 120.08797 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00156 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00057 * 180.27782 * 12 10 9 14 14 H 1.08997 * 109.46995 * 324.73285 * 13 12 10 15 15 C 1.53001 * 109.46825 * 84.72473 * 13 12 10 16 16 C 1.52997 * 109.47280 * 204.72500 * 13 12 10 17 17 N 1.46501 * 109.46947 * 55.00268 * 16 13 12 18 18 C 1.46505 * 119.99946 * 269.99971 * 17 16 13 19 19 C 1.36936 * 120.00416 * 89.99596 * 17 16 13 20 20 H 1.08001 * 119.99510 * 20.38696 * 19 17 16 21 21 C 1.38806 * 120.00643 * 200.38138 * 19 17 16 22 22 N 1.31622 * 119.99862 * 15.00602 * 21 19 17 23 23 Si 1.86803 * 120.00313 * 195.00851 * 21 19 17 24 24 H 1.48501 * 109.47082 * 85.00300 * 23 21 19 25 25 H 1.48497 * 109.46697 * 205.00113 * 23 21 19 26 26 H 1.48500 * 109.46964 * 325.00227 * 23 21 19 27 27 C 1.39734 * 119.82453 * 0.28166 * 9 8 7 28 28 C 1.37704 * 119.91301 * 359.46115 * 27 9 8 29 29 H 1.08997 * 109.47005 * 299.99357 * 1 2 3 30 30 H 1.08996 * 109.47382 * 60.00114 * 1 2 3 31 31 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46653 * 240.00347 * 2 1 3 33 33 H 1.08995 * 109.47137 * 120.00378 * 2 1 3 34 34 H 1.08997 * 109.46819 * 60.00528 * 3 2 1 35 35 H 1.08996 * 109.47062 * 300.00081 * 3 2 1 36 36 H 1.09002 * 109.46653 * 60.00347 * 4 3 2 37 37 H 1.08995 * 109.47137 * 300.00378 * 4 3 2 38 38 H 1.08003 * 119.95292 * 359.97438 * 7 6 5 39 39 H 1.08000 * 120.04257 * 179.97438 * 8 7 6 40 40 H 0.97002 * 120.00105 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.47055 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47433 * 300.00303 * 15 13 12 43 43 H 1.09006 * 109.46960 * 60.00048 * 15 13 12 44 44 H 1.08998 * 109.47256 * 174.99951 * 16 13 12 45 45 H 1.09001 * 109.47536 * 295.00567 * 16 13 12 46 46 H 1.08996 * 109.47174 * 95.13002 * 18 17 16 47 47 H 1.08997 * 109.46904 * 215.13301 * 18 17 16 48 48 H 1.08999 * 109.47031 * 335.12818 * 18 17 16 49 49 H 0.96999 * 120.00190 * 179.97438 * 22 21 19 50 50 H 1.08003 * 120.04461 * 179.70479 * 27 9 8 51 51 H 1.08000 * 119.95692 * 180.25622 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3917 2.9677 0.0000 7 6 5.9210 4.2529 -0.0001 8 6 7.2856 4.4376 0.0004 9 6 8.1384 3.3308 0.0014 10 6 9.6018 3.5242 0.0013 11 8 10.0665 4.6478 0.0008 12 7 10.4228 2.4554 0.0018 13 6 11.8752 2.6473 0.0079 14 1 12.1277 3.5282 -0.5823 15 6 12.3578 2.8420 1.4467 16 6 12.5548 1.4168 -0.5959 17 7 12.0051 1.1604 -1.9295 18 6 10.8379 0.2887 -2.0855 19 6 12.5821 1.7355 -3.0302 20 1 13.5996 2.0942 -2.9811 21 6 11.8594 1.8572 -4.2090 22 7 10.5525 1.7014 -4.1987 23 14 12.7416 2.2422 -5.8099 24 1 13.2427 0.9818 -6.4145 25 1 11.7982 2.9007 -6.7489 26 1 13.8850 3.1502 -5.5391 27 6 7.6024 2.0404 -0.0040 28 6 6.2367 1.8640 0.0010 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9336 0.9286 -0.8892 37 1 3.9329 0.9288 0.8908 38 1 5.2611 5.1079 -0.0005 39 1 7.6960 5.4365 -0.0001 40 1 10.0521 1.5590 0.0018 41 1 13.4385 2.9844 1.4513 42 1 11.8736 3.7187 1.8769 43 1 12.1052 1.9611 2.0370 44 1 13.6273 1.5953 -0.6733 45 1 12.3755 0.5523 0.0433 46 1 9.9329 0.8954 -2.1160 47 1 10.9280 -0.2765 -3.0131 48 1 10.7846 -0.4012 -1.2434 49 1 10.0474 1.7868 -5.0224 50 1 8.2583 1.1823 -0.0080 51 1 5.8216 0.8670 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569151621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:30 Heat of formation + Delta-G solvation = -41.985109 kcal Electronic energy + Delta-G solvation = -28953.898782 eV Core-core repulsion = 25046.883443 eV Total energy + Delta-G solvation = -3907.015340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.33552 -39.21966 -37.30285 -36.20703 -35.36033 -34.00716 -31.78366 -30.89779 -30.54714 -30.00314 -28.82606 -26.18145 -25.59562 -24.58862 -23.41661 -22.45508 -21.61820 -21.26616 -20.30740 -19.79103 -18.32146 -17.18644 -16.79527 -16.63554 -16.13981 -15.23800 -15.05942 -14.89225 -14.80293 -14.38870 -14.09569 -13.83558 -13.62621 -13.59813 -13.40391 -13.16167 -13.07781 -12.83599 -12.54670 -12.31317 -12.10759 -12.07061 -11.82533 -11.52503 -11.46746 -11.42802 -11.18796 -11.07208 -10.84848 -10.79985 -10.77271 -10.74864 -10.52484 -10.19641 -9.95374 -9.81779 -9.32689 -8.99788 -8.58582 -8.37905 -8.09853 -6.76688 -5.70846 -3.13770 1.12112 1.41844 2.97439 3.27324 3.41041 3.47392 3.48594 3.80119 4.18224 4.48945 4.49586 4.53161 4.65859 4.76641 4.86913 4.87424 5.02476 5.14889 5.17616 5.33966 5.37514 5.38047 5.39002 5.43289 5.49131 5.52659 5.68638 5.70632 5.74050 5.81413 5.88184 5.90363 6.00971 6.01917 6.11147 6.19795 6.27298 6.33123 6.48444 6.51174 6.56883 6.64199 6.72285 6.91428 7.22061 7.31307 7.32007 7.64564 7.82569 8.17720 8.39186 8.87179 9.24119 9.87472 10.34328 11.34593 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.002744 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.981965 B =10202.661927 C =11363.810372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.056 3.944 5 O -0.315 6.315 6 C 0.147 3.853 7 C -0.163 4.163 8 C -0.023 4.023 9 C -0.159 4.159 10 C 0.564 3.436 11 O -0.553 6.553 12 N -0.694 5.694 13 C 0.116 3.884 14 H 0.086 0.914 15 C -0.159 4.159 16 C 0.143 3.857 17 N -0.597 5.597 18 C 0.160 3.840 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 C -0.038 4.038 28 C -0.216 4.216 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.393 0.607 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.032 0.968 47 H 0.043 0.957 48 H -0.006 1.006 49 H 0.251 0.749 50 H 0.128 0.872 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 -3.886 12.396 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.019 4.019 5 O -0.228 6.228 6 C 0.101 3.899 7 C -0.182 4.182 8 C -0.042 4.042 9 C -0.162 4.162 10 C 0.351 3.649 11 O -0.432 6.432 12 N -0.343 5.343 13 C 0.009 3.991 14 H 0.104 0.896 15 C -0.218 4.218 16 C 0.014 3.986 17 N -0.319 5.319 18 C 0.016 3.984 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.548 5.548 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.206 1.206 27 C -0.057 4.057 28 C -0.235 4.235 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.228 0.772 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.012 0.988 49 H 0.061 0.939 50 H 0.146 0.854 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.432 -2.985 12.223 19.911 hybrid contribution 0.235 -0.430 -1.115 1.218 sum -15.197 -3.415 11.108 19.131 Atomic orbital electron populations 1.21749 0.95217 1.01873 1.02070 1.21442 0.96400 0.95613 1.02565 1.21580 0.92542 0.97794 1.03758 1.22889 0.95340 0.81911 1.01764 1.85990 1.19227 1.29361 1.88237 1.19185 0.82018 0.94214 0.94449 1.20340 0.94962 0.94741 1.08124 1.21059 0.91413 0.99239 0.92457 1.19988 0.93886 0.93877 1.08467 1.17991 0.85850 0.84931 0.76126 1.90711 1.77453 1.23779 1.51294 1.45693 1.06905 1.08334 1.73372 1.21887 0.79381 1.02906 0.94949 0.89557 1.22156 1.01002 1.01180 0.97463 1.21195 0.97046 0.93277 0.87052 1.43914 1.34035 1.53267 1.00701 1.20862 0.90006 0.91291 0.96276 1.19168 0.95253 1.34982 0.89076 0.91302 1.24944 0.95148 1.00621 0.98809 1.70063 1.04381 1.54194 1.26133 0.86289 0.78701 0.77822 0.83823 1.21587 1.21853 1.20595 1.21104 0.94532 0.96415 0.93608 1.21115 0.94041 0.98085 1.10253 0.92590 0.92522 0.92470 0.91511 0.91638 0.90856 0.90743 0.91679 0.91880 0.84848 0.84126 0.77197 0.92078 0.92905 0.93246 0.92212 0.94046 0.95008 0.93785 0.98759 0.93888 0.85374 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.12 -0.87 5.58 -26.73 -0.15 -1.02 16 4 C 0.06 0.50 4.73 37.16 0.18 0.68 16 5 O -0.31 -3.82 10.12 -18.82 -0.19 -4.01 16 6 C 0.15 1.99 6.70 -39.02 -0.26 1.72 16 7 C -0.16 -2.26 9.97 -39.50 -0.39 -2.65 16 8 C -0.02 -0.36 9.58 -39.22 -0.38 -0.74 16 9 C -0.16 -2.74 5.87 -104.96 -0.62 -3.36 16 10 C 0.56 11.37 7.73 -12.44 -0.10 11.27 16 11 O -0.55 -12.83 16.00 5.29 0.08 -12.75 16 12 N -0.69 -13.05 4.37 -54.82 -0.24 -13.29 16 13 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 14 H 0.09 1.99 7.58 -51.93 -0.39 1.60 16 15 C -0.16 -2.44 9.48 37.16 0.35 -2.09 16 16 C 0.14 2.77 5.33 -4.04 -0.02 2.75 16 17 N -0.60 -14.35 2.78 -181.12 -0.50 -14.85 16 18 C 0.16 3.70 7.60 59.85 0.45 4.15 16 19 C -0.26 -6.95 9.68 -15.06 -0.15 -7.09 16 20 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 21 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 22 N -0.90 -26.16 10.67 55.49 0.59 -25.57 16 23 Si 0.90 22.25 29.58 -169.99 -5.03 17.22 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C -0.04 -0.56 9.53 -39.22 -0.37 -0.93 16 28 C -0.22 -2.83 9.01 -39.49 -0.36 -3.19 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 37 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 38 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.14 2.19 7.64 -52.49 -0.40 1.79 16 40 H 0.39 6.73 5.20 -40.82 -0.21 6.52 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 45 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 46 H 0.03 0.78 6.97 -51.93 -0.36 0.42 16 47 H 0.04 1.12 7.22 -51.93 -0.37 0.75 16 48 H -0.01 -0.12 7.83 -51.93 -0.41 -0.53 16 49 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 50 H 0.13 1.73 6.40 -52.48 -0.34 1.40 16 51 H 0.13 1.37 6.28 -52.49 -0.33 1.04 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -32.70 411.40 -9.60 -42.30 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.63 Total: 4.54 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.88 Total: 0.20 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.15 Total: -53.71 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.11 Total: -16.76 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.70 -9.60 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569151621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.313 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds