Wall clock time and date at job start Sat Apr 11 2020 04:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47368 * 120.00773 * 2 1 3 5 5 H 1.09008 * 109.46970 * 299.99579 * 4 2 1 6 6 C 1.53001 * 109.47203 * 59.99220 * 4 2 1 7 7 C 1.53000 * 109.46886 * 184.99990 * 6 4 2 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 4 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21690 * 119.99916 * 0.02562 * 9 8 7 11 11 C 1.46659 * 119.99729 * 180.02562 * 9 8 7 12 12 C 1.36771 * 125.95110 * 179.97438 * 11 9 8 13 13 C 1.39664 * 106.53074 * 180.02562 * 12 11 9 14 14 C 1.35567 * 107.41383 * 0.04560 * 13 12 11 15 15 O 1.33503 * 108.60873 * 359.65252 * 14 13 12 16 16 C 1.51001 * 123.79761 * 179.90803 * 14 13 12 17 17 C 1.53332 * 108.40913 * 343.26911 * 16 14 13 18 18 C 1.53108 * 109.55412 * 50.17700 * 17 16 14 19 19 C 1.50700 * 128.12266 * 180.14222 * 13 12 11 20 20 N 1.46494 * 109.47118 * 179.97438 * 4 2 1 21 21 C 1.36935 * 120.00348 * 84.99886 * 20 4 2 22 22 H 1.08001 * 119.99995 * 359.97438 * 21 20 4 23 23 C 1.38812 * 120.00332 * 180.02562 * 21 20 4 24 24 N 1.31628 * 119.99614 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00299 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47241 * 59.99976 * 25 23 21 27 27 H 1.48506 * 109.47214 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46854 * 299.99724 * 25 23 21 29 29 H 1.09008 * 109.46711 * 300.00058 * 1 2 3 30 30 H 1.09006 * 109.47254 * 59.99178 * 1 2 3 31 31 H 1.08987 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46227 * 240.00524 * 2 1 3 33 33 H 1.09000 * 109.46785 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47404 * 300.00569 * 3 2 1 35 35 H 1.08998 * 109.46813 * 60.00470 * 3 2 1 36 36 H 1.09001 * 109.46652 * 65.00335 * 6 4 2 37 37 H 1.08992 * 109.47514 * 305.00424 * 6 4 2 38 38 H 1.09002 * 109.47398 * 300.00496 * 7 6 4 39 39 H 1.09001 * 109.47194 * 60.00677 * 7 6 4 40 40 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 41 41 H 1.07994 * 126.73801 * 0.04541 * 12 11 9 42 42 H 1.09000 * 109.68070 * 102.99536 * 16 14 13 43 43 H 1.08996 * 109.67694 * 223.50739 * 16 14 13 44 44 H 1.09006 * 109.45091 * 170.19852 * 17 16 14 45 45 H 1.08995 * 109.45814 * 290.14346 * 17 16 14 46 46 H 1.08997 * 109.47983 * 49.75469 * 18 17 16 47 47 H 1.09003 * 109.47450 * 169.77768 * 18 17 16 48 48 H 1.08994 * 109.68102 * 283.24414 * 19 13 12 49 49 H 1.09002 * 109.68212 * 43.80338 * 19 13 12 50 50 H 0.97006 * 119.99500 * 264.99555 * 20 4 2 51 51 H 0.96998 * 119.99521 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5299 -2.1638 1.2490 7 6 1.9348 -2.8480 2.5563 8 7 1.4469 -4.2293 2.5560 9 6 1.6870 -5.0291 3.6139 10 8 2.3087 -4.6036 4.5696 11 6 1.1990 -6.4121 3.6133 12 6 1.3728 -7.3253 4.6166 13 6 0.7501 -8.5022 4.1948 14 6 0.2275 -8.2669 2.9662 15 8 0.4950 -7.0045 2.6241 16 6 -0.5291 -9.2983 2.1638 17 6 -0.2344 -10.6825 2.7537 18 6 -0.4561 -10.6518 4.2684 19 6 0.6467 -9.8145 4.9285 20 7 3.5050 -0.7219 1.2487 21 6 4.1902 0.3526 1.7497 22 1 3.6507 1.2007 2.1447 23 6 5.5783 0.3524 1.7488 24 7 6.2359 -0.6810 1.2669 25 14 6.5131 1.8185 2.4315 26 1 6.1553 2.0123 3.8597 27 1 7.9730 1.5719 2.3166 28 1 6.1542 3.0365 1.6616 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0275 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.9645 -2.7028 0.4071 37 1 0.4437 -2.1651 1.1595 38 1 3.0211 -2.8467 2.6458 39 1 1.5002 -2.3090 3.3982 40 1 0.9510 -4.5684 1.7944 41 1 1.8897 -7.1673 5.5515 42 1 -1.5985 -9.0953 2.2205 43 1 -0.2039 -9.2651 1.1240 44 1 -0.9013 -11.4182 2.3040 45 1 0.8000 -10.9541 2.5435 46 1 -1.4280 -10.2084 4.4846 47 1 -0.4247 -11.6682 4.6609 48 1 1.5970 -10.3449 4.8677 49 1 0.3936 -9.6322 5.9729 50 1 3.9896 -1.4835 0.8936 51 1 7.2059 -0.6810 1.2660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571349913.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:01 Heat of formation + Delta-G solvation = -41.341227 kcal Electronic energy + Delta-G solvation = -28588.899641 eV Core-core repulsion = 24681.912222 eV Total energy + Delta-G solvation = -3906.987419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.99086 -39.35523 -37.51477 -37.40459 -34.78366 -33.25509 -33.02940 -31.31779 -30.54058 -29.86367 -29.04103 -26.41218 -25.56960 -24.23289 -23.11583 -22.67954 -21.97090 -21.08537 -20.78205 -19.37117 -19.01341 -17.91040 -17.09644 -16.74154 -16.13807 -15.78875 -15.31367 -15.04720 -14.70682 -14.29798 -14.26018 -13.96356 -13.86653 -13.68229 -13.47447 -13.30016 -13.09364 -13.05755 -12.78314 -12.72051 -12.53593 -11.99594 -11.69400 -11.60769 -11.34239 -11.29479 -11.19800 -10.96644 -10.88127 -10.76009 -10.59465 -10.46386 -10.29226 -10.14142 -10.03107 -9.84332 -9.80441 -9.42527 -8.94868 -8.79575 -8.46235 -6.90638 -5.71936 -2.99631 0.97425 2.14015 2.42936 3.24560 3.28413 3.47385 3.52619 3.52821 4.23800 4.36486 4.40058 4.52151 4.63286 4.73114 4.89412 5.01794 5.08421 5.10142 5.22499 5.36093 5.38398 5.40996 5.49066 5.50566 5.53982 5.57191 5.67942 5.72108 5.72740 5.78434 5.83518 5.86184 5.93002 6.02706 6.18301 6.23979 6.26838 6.28819 6.39714 6.41293 6.52717 6.66415 6.68093 6.72221 6.79581 6.84986 7.14538 7.35356 7.58607 7.75448 8.20885 8.46269 9.57589 10.14205 10.49030 11.50508 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.002279 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.329262 B =12281.834152 C =13486.456590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.186 3.814 5 H 0.050 0.950 6 C -0.136 4.136 7 C 0.121 3.879 8 N -0.716 5.716 9 C 0.597 3.403 10 O -0.516 6.516 11 C -0.074 4.074 12 C -0.114 4.114 13 C -0.190 4.190 14 C 0.012 3.988 15 O -0.157 6.157 16 C -0.040 4.040 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.050 4.050 20 N -0.721 5.721 21 C -0.232 4.232 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.902 3.098 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.401 0.599 41 H 0.160 0.840 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 -19.670 1.025 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.075 3.925 5 H 0.068 0.932 6 C -0.175 4.175 7 C -0.001 4.001 8 N -0.366 5.366 9 C 0.382 3.618 10 O -0.394 6.394 11 C -0.126 4.126 12 C -0.135 4.135 13 C -0.192 4.192 14 C -0.041 4.041 15 O -0.053 6.053 16 C -0.076 4.076 17 C -0.154 4.154 18 C -0.160 4.160 19 C -0.087 4.087 20 N -0.362 5.362 21 C -0.363 4.363 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.235 0.765 41 H 0.177 0.823 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.169 -19.014 1.527 25.664 hybrid contribution 0.600 0.500 -0.067 0.784 sum -16.569 -18.514 1.460 24.889 Atomic orbital electron populations 1.21939 0.97153 1.00630 1.00748 1.21774 0.93267 0.97736 1.00472 1.21830 1.04273 0.94828 0.98817 1.20182 0.86047 0.90977 0.95297 0.93245 1.22139 1.00584 0.98297 0.96459 1.21552 1.01450 0.78629 0.98480 1.46038 1.56994 1.13997 1.19590 1.16541 0.79857 0.81814 0.83539 1.90917 1.40487 1.73305 1.34676 1.22268 1.04804 0.95516 0.90034 1.21597 1.00560 0.91385 0.99925 1.20148 1.05279 0.97509 0.96242 1.22686 1.01796 0.83591 0.96010 1.83885 1.56835 1.23187 1.41344 1.20319 0.98944 0.89934 0.98448 1.21599 1.02899 0.94981 0.95923 1.21647 0.99074 1.00263 0.95019 1.20099 0.99338 0.90757 0.98545 1.42441 0.98896 1.21097 1.73767 1.19144 0.88774 0.96238 1.32125 0.91075 1.24716 0.96499 0.97722 1.02007 1.69645 1.06865 1.29855 1.51672 0.86346 0.79114 0.82335 0.78893 1.21309 1.21835 1.21350 0.93272 0.93833 0.93216 0.92197 0.89483 0.95233 0.94118 0.91556 0.91452 0.89358 0.91478 0.76542 0.82271 0.89216 0.89360 0.90318 0.91031 0.91446 0.91005 0.90579 0.90512 0.78297 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.85 37.16 0.33 -1.69 16 2 C -0.11 -1.90 2.69 -90.62 -0.24 -2.14 16 3 C -0.14 -2.59 8.26 37.16 0.31 -2.28 16 4 C 0.19 3.47 2.02 -67.94 -0.14 3.33 16 5 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 6 C -0.14 -2.09 4.65 -26.73 -0.12 -2.22 16 7 C 0.12 2.05 5.56 -4.04 -0.02 2.03 16 8 N -0.72 -10.62 5.55 -61.62 -0.34 -10.96 16 9 C 0.60 9.93 7.79 -12.86 -0.10 9.83 16 10 O -0.52 -10.50 16.86 5.20 0.09 -10.41 16 11 C -0.07 -1.06 7.14 -36.72 -0.26 -1.32 16 12 C -0.11 -1.48 10.60 -39.58 -0.42 -1.90 16 13 C -0.19 -2.02 5.93 -105.04 -0.62 -2.65 16 14 C 0.01 0.12 7.22 -35.12 -0.25 -0.13 16 15 O -0.16 -1.96 10.39 5.56 0.06 -1.90 16 16 C -0.04 -0.25 6.30 -27.56 -0.17 -0.43 16 17 C -0.12 -0.59 5.89 -26.50 -0.16 -0.74 16 18 C -0.12 -0.66 5.91 -26.47 -0.16 -0.82 16 19 C -0.05 -0.37 6.28 -27.68 -0.17 -0.55 16 20 N -0.72 -17.08 4.45 -53.43 -0.24 -17.31 16 21 C -0.23 -6.16 7.57 -15.06 -0.11 -6.27 16 22 H 0.07 1.85 7.39 -52.49 -0.39 1.46 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 25 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.61 6.32 -51.94 -0.33 0.28 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.87 6.17 -51.93 -0.32 0.55 16 38 H 0.09 1.84 7.75 -51.93 -0.40 1.43 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.40 4.86 8.23 -40.82 -0.34 4.52 16 41 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 46 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 51 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 405.55 15.07 6.11 6.11 Total: -1.00 -31.93 405.55 -9.76 -41.69 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.72 Total: 10.96 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.42 Total: -8.41 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.14 Total: -55.51 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.15 Total: -12.31 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.93 -9.76 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571349913.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.353 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds