Wall clock time and date at job start Sat Apr 11 2020 04:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00071 * 2 1 4 4 C 1.52998 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47239 * 59.99997 * 4 3 2 6 6 C 1.52993 * 109.46937 * 299.99443 * 4 3 2 7 7 C 1.53010 * 109.46883 * 179.97438 * 4 3 2 8 8 C 1.50698 * 109.46920 * 179.97438 * 7 4 3 9 9 O 1.21287 * 119.99915 * 0.02562 * 8 7 4 10 10 N 1.34772 * 120.00104 * 180.02562 * 8 7 4 11 11 C 1.46497 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.46831 * 64.99646 * 12 11 10 14 14 N 1.46506 * 109.46782 * 305.00022 * 12 11 10 15 15 C 1.36938 * 119.99589 * 155.00217 * 14 12 11 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99817 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99673 * 359.71804 * 17 15 14 19 19 Si 1.86795 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47274 * 89.99913 * 19 17 15 21 21 H 1.48505 * 109.47015 * 209.99478 * 19 17 15 22 22 H 1.48498 * 109.47362 * 329.99904 * 19 17 15 23 23 C 1.50695 * 109.47111 * 184.99900 * 12 11 10 24 24 C 1.38241 * 119.99779 * 79.72889 * 23 12 11 25 25 C 1.38233 * 119.99752 * 179.78950 * 24 23 12 26 26 C 1.38240 * 120.00051 * 0.43349 * 25 24 23 27 27 C 1.38236 * 119.99857 * 359.81831 * 26 25 24 28 28 C 1.38229 * 119.99838 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47454 * 300.00874 * 1 2 3 31 31 H 1.09005 * 109.46827 * 60.00658 * 1 2 3 32 32 H 1.09004 * 109.47303 * 59.98830 * 3 2 1 33 33 H 1.09006 * 109.46764 * 299.99485 * 3 2 1 34 34 H 1.08995 * 109.47140 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47040 * 299.99828 * 5 4 3 36 36 H 1.09006 * 109.47334 * 59.99703 * 5 4 3 37 37 H 1.09001 * 109.47526 * 299.99967 * 6 4 3 38 38 H 1.09001 * 109.46944 * 60.00416 * 6 4 3 39 39 H 1.09008 * 109.47013 * 180.02562 * 6 4 3 40 40 H 1.08999 * 109.46533 * 59.99925 * 7 4 3 41 41 H 1.08997 * 109.47210 * 299.99962 * 7 4 3 42 42 H 0.97004 * 119.99971 * 0.02562 * 10 8 7 43 43 H 1.08993 * 109.47197 * 60.00229 * 11 10 8 44 44 H 1.08997 * 109.47140 * 299.99817 * 11 10 8 45 45 H 0.96999 * 120.00080 * 334.99707 * 14 12 11 46 46 H 0.97000 * 120.00043 * 180.02562 * 18 17 15 47 47 H 1.08001 * 120.00350 * 359.97438 * 24 23 12 48 48 H 1.07999 * 120.00213 * 180.27583 * 25 24 23 49 49 H 1.07999 * 120.00315 * 179.83359 * 26 25 24 50 50 H 1.08000 * 119.99740 * 180.02562 * 27 26 25 51 51 H 1.08010 * 119.99845 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9863 0.4257 1.2502 7 6 4.1578 2.5825 0.0000 8 6 5.6600 2.4635 0.0013 9 8 6.1816 1.3685 0.0021 10 7 6.4240 3.5738 0.0015 11 6 7.8844 3.4581 0.0022 12 6 8.5067 4.8559 0.0029 13 1 8.2572 5.3641 0.9343 14 7 7.9821 5.6245 -1.1286 15 6 7.9615 6.9928 -1.0759 16 1 8.3316 7.5052 -0.2002 17 6 7.4639 7.7211 -2.1478 18 7 7.0171 7.0968 -3.2168 19 14 7.4352 9.5875 -2.0758 20 1 8.7075 10.1236 -2.6226 21 1 6.2965 10.0964 -2.8819 22 1 7.2786 10.0261 -0.6658 23 6 10.0041 4.7391 -0.1202 24 6 10.5805 4.5150 -1.3565 25 6 11.9543 4.4122 -1.4701 26 6 12.7512 4.5246 -0.3461 27 6 12.1744 4.7435 0.8910 28 6 10.8008 4.8506 1.0039 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6885 1.8465 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 5.0740 0.3395 -1.2480 35 1 3.5441 -0.5707 -1.2482 36 1 3.6662 0.9659 -2.1385 37 1 3.6644 0.9669 2.1400 38 1 3.5430 -0.5701 1.2503 39 1 5.0731 0.3400 1.2509 40 1 3.8357 3.1238 0.8895 41 1 3.8365 3.1228 -0.8904 42 1 6.0068 4.4495 0.0012 43 1 8.2064 2.9171 -0.8876 44 1 8.2056 2.9173 0.8923 45 1 7.6494 5.1643 -1.9149 46 1 6.6697 7.6057 -3.9660 47 1 9.9578 4.4232 -2.2341 48 1 12.4050 4.2416 -2.4366 49 1 13.8244 4.4417 -0.4344 50 1 12.7969 4.8317 1.7690 51 1 10.3502 5.0220 1.9704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664587725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:34 Heat of formation + Delta-G solvation = -55.490330 kcal Electronic energy + Delta-G solvation = -29096.173380 eV Core-core repulsion = 25188.572410 eV Total energy + Delta-G solvation = -3907.600970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.02045 -38.92888 -38.17770 -36.16836 -35.14060 -33.56237 -32.04736 -30.42252 -29.59281 -28.92991 -27.48791 -27.02561 -26.74957 -25.43395 -23.72038 -22.75049 -21.93858 -20.31314 -20.00258 -18.96432 -17.43058 -16.92691 -16.45433 -16.24866 -15.95128 -15.54931 -15.37910 -15.08843 -14.85477 -14.60643 -14.18070 -13.91941 -13.78272 -13.49940 -13.41838 -13.09039 -12.88901 -12.83634 -12.49715 -12.34747 -12.20538 -12.00832 -11.74958 -11.59143 -11.27730 -11.02332 -10.94202 -10.89035 -10.84604 -10.73660 -10.67125 -10.59757 -10.46881 -10.17129 -9.82862 -9.77142 -9.25006 -9.08439 -8.60510 -8.41503 -8.19657 -7.15971 -5.89666 -3.20915 1.85435 1.91886 2.95563 3.35332 3.38288 3.42247 3.43051 3.85310 4.30107 4.48148 4.74000 4.80798 4.94765 5.13702 5.14908 5.23442 5.28919 5.32879 5.34522 5.38802 5.41290 5.45417 5.46010 5.55359 5.56442 5.61393 5.64533 5.77515 5.81233 5.87434 6.03196 6.07324 6.08635 6.13377 6.21278 6.25657 6.35453 6.41942 6.47758 6.60449 6.62132 6.64693 6.89628 6.95191 7.02278 7.03773 7.27349 7.52044 7.60971 7.93731 8.26579 8.60734 9.39719 9.89709 10.26445 11.31658 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.003049 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.955028 B = 9180.078834 C =11309.407960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.070 3.930 4 C -0.041 4.041 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.135 4.135 8 C 0.515 3.485 9 O -0.543 6.543 10 N -0.714 5.714 11 C 0.122 3.878 12 C 0.198 3.802 13 H 0.065 0.935 14 N -0.714 5.714 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.006 4.006 18 N -0.928 5.928 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.081 4.081 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.410 0.590 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.387 0.613 46 H 0.256 0.744 47 H 0.123 0.877 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -10.294 7.866 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.007 4.007 4 C -0.041 4.041 5 C -0.206 4.206 6 C -0.205 4.205 7 C -0.175 4.175 8 C 0.302 3.698 9 O -0.422 6.422 10 N -0.365 5.365 11 C -0.003 4.003 12 C 0.087 3.913 13 H 0.082 0.918 14 N -0.354 5.354 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.736 3.264 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.085 4.085 24 C -0.102 4.102 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.148 4.148 28 C -0.139 4.139 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.222 0.778 46 H 0.066 0.934 47 H 0.141 0.859 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.130 0.870 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.563 -11.026 7.887 14.304 hybrid contribution -0.462 1.912 -0.425 2.013 sum -5.025 -9.114 7.462 12.806 Atomic orbital electron populations 1.22716 0.81531 1.02494 0.99810 1.87884 1.19080 1.27925 1.95338 1.22621 0.93675 0.84471 0.99926 1.20211 0.91536 0.94103 0.98291 1.22024 1.03997 0.99667 0.94893 1.22021 1.03967 0.99710 0.94781 1.21675 0.92847 0.98384 1.04574 1.20382 0.89182 0.84253 0.76006 1.90552 1.75098 1.26300 1.50233 1.46009 1.07047 1.09490 1.74003 1.21548 0.79503 0.97456 1.01787 1.19485 0.87738 0.90343 0.93750 0.91758 1.42455 1.73116 1.03400 1.16475 1.19183 1.34948 0.82231 1.01048 0.91127 1.24716 1.01351 0.97812 0.96334 1.69655 1.47227 1.34343 1.06325 0.86229 0.77180 0.85715 0.77262 1.21717 1.21787 1.20715 1.20984 0.98025 0.96560 0.92941 1.21003 0.94244 0.97151 0.97781 1.21107 0.94168 1.01223 0.98064 1.20982 0.99044 1.02135 0.93110 1.20981 0.94965 1.01709 0.97144 1.21007 0.93546 1.01257 0.98135 0.89844 0.94308 0.94216 0.93450 0.93271 0.89618 0.92511 0.93755 0.94010 0.92483 0.89635 0.89044 0.88584 0.75353 0.91667 0.91633 0.77847 0.93393 0.85946 0.86866 0.87094 0.87006 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.43 9.35 -35.23 -0.33 -4.76 16 3 C 0.07 0.75 4.80 37.16 0.18 0.93 16 4 C -0.04 -0.50 0.60 -154.51 -0.09 -0.59 16 5 C -0.15 -2.02 8.03 37.16 0.30 -1.72 16 6 C -0.15 -1.89 8.03 37.15 0.30 -1.59 16 7 C -0.13 -1.62 4.77 -27.88 -0.13 -1.75 16 8 C 0.52 7.73 7.24 -10.99 -0.08 7.66 16 9 O -0.54 -9.40 11.35 5.55 0.06 -9.34 16 10 N -0.71 -10.96 5.39 -60.30 -0.32 -11.29 16 11 C 0.12 1.98 5.21 -4.04 -0.02 1.96 16 12 C 0.20 3.54 2.64 -69.08 -0.18 3.36 16 13 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 14 N -0.71 -15.65 3.81 -54.55 -0.21 -15.86 16 15 C -0.24 -6.12 9.92 -15.06 -0.15 -6.27 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 18 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 19 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.08 -1.44 4.92 -104.63 -0.51 -1.96 16 24 C -0.08 -1.52 9.32 -39.58 -0.37 -1.89 16 25 C -0.13 -2.06 10.05 -39.58 -0.40 -2.45 16 26 C -0.13 -1.98 10.05 -39.58 -0.40 -2.37 16 27 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 28 C -0.12 -1.91 9.67 -39.59 -0.38 -2.30 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.34 5.51 -51.93 -0.29 1.05 16 35 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.73 7.68 -51.93 -0.40 0.34 16 39 H 0.09 1.26 5.51 -51.92 -0.29 0.98 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.41 6.34 8.14 -40.82 -0.33 6.01 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.39 9.20 7.80 -40.82 -0.32 8.88 16 46 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.12 2.39 7.73 -52.49 -0.41 1.98 16 48 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 49 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 50 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 51 H 0.11 1.59 8.04 -52.48 -0.42 1.16 16 LS Contribution 411.55 15.07 6.20 6.20 Total: -1.00 -29.08 411.55 -8.95 -38.03 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -8.73 Total: 16.14 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.33 Total: -10.16 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.19 Total: -52.39 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.27 Total: -14.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.08 -8.95 -38.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664587725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.458 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds