Wall clock time and date at job start Sat Apr 11 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00027 * 2 1 4 4 C 1.52996 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47460 * 59.99800 * 4 3 2 6 6 C 1.53008 * 109.47234 * 299.99859 * 4 3 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 4 3 2 8 8 C 1.50706 * 109.47348 * 179.97438 * 7 4 3 9 9 O 1.21283 * 119.99503 * 359.97438 * 8 7 4 10 10 N 1.34773 * 120.00081 * 179.72561 * 8 7 4 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47161 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.46950 * 294.99632 * 12 11 10 14 14 N 1.46495 * 109.47319 * 54.99451 * 12 11 10 15 15 C 1.36939 * 120.00111 * 205.00133 * 14 12 11 16 16 H 1.08004 * 119.99680 * 359.97438 * 15 14 12 17 17 C 1.38810 * 120.00065 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47122 * 59.99356 * 19 17 15 21 21 H 1.48495 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46880 * 299.99567 * 19 17 15 23 23 C 1.50696 * 109.47126 * 174.99735 * 12 11 10 24 24 C 1.38233 * 120.00444 * 279.72540 * 23 12 11 25 25 C 1.38235 * 120.00293 * 179.78621 * 24 23 12 26 26 C 1.38234 * 119.99846 * 0.44479 * 25 24 23 27 27 C 1.38228 * 119.99859 * 359.80707 * 26 25 24 28 28 C 1.38227 * 120.00532 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47251 * 299.99966 * 1 2 3 31 31 H 1.08994 * 109.47128 * 59.99985 * 1 2 3 32 32 H 1.09000 * 109.46862 * 59.99822 * 3 2 1 33 33 H 1.08994 * 109.46972 * 300.00067 * 3 2 1 34 34 H 1.09002 * 109.47712 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47426 * 300.00241 * 5 4 3 36 36 H 1.09002 * 109.47145 * 59.99821 * 5 4 3 37 37 H 1.09004 * 109.46786 * 300.00139 * 6 4 3 38 38 H 1.08995 * 109.46766 * 60.00302 * 6 4 3 39 39 H 1.09002 * 109.47164 * 180.02562 * 6 4 3 40 40 H 1.09001 * 109.47671 * 60.00109 * 7 4 3 41 41 H 1.08998 * 109.47454 * 300.00107 * 7 4 3 42 42 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 43 43 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 44 44 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 45 45 H 0.97001 * 119.99963 * 25.00675 * 14 12 11 46 46 H 0.97003 * 120.00653 * 180.02562 * 18 17 15 47 47 H 1.08007 * 119.99406 * 359.97438 * 24 23 12 48 48 H 1.08001 * 119.99807 * 180.26979 * 25 24 23 49 49 H 1.08005 * 119.99594 * 179.83423 * 26 25 24 50 50 H 1.08011 * 119.99648 * 180.02562 * 27 26 25 51 51 H 1.08002 * 120.00686 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4257 -1.2501 6 6 3.9874 0.4252 1.2484 7 6 4.1577 2.5824 0.0000 8 6 5.6600 2.4635 0.0000 9 8 6.1816 1.3686 0.0000 10 7 6.4239 3.5739 -0.0051 11 6 7.8844 3.4582 -0.0056 12 6 8.5066 4.8559 -0.0124 13 1 8.2569 5.3602 -0.9460 14 7 7.9822 5.6294 1.1158 15 6 7.9616 6.9974 1.0574 16 1 8.3322 7.5060 0.1797 17 6 7.4652 7.7303 2.1266 18 7 7.0140 7.1104 3.1964 19 14 7.4363 9.5964 2.0467 20 1 6.6026 10.0298 0.8968 21 1 6.8625 10.1370 3.3051 22 1 8.8205 10.1059 1.8744 23 6 10.0040 4.7397 0.1109 24 6 10.5816 4.5321 1.3495 25 6 11.9549 4.4212 1.4620 26 6 12.7512 4.5270 0.3370 27 6 12.1741 4.7397 -0.9008 28 6 10.8005 4.8462 -1.0140 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 5.0730 0.3399 -1.2508 35 1 3.5431 -0.5701 -1.2502 36 1 3.6644 0.9667 -2.1399 37 1 3.6661 0.9660 2.1386 38 1 3.5441 -0.5705 1.2483 39 1 5.0741 0.3395 1.2481 40 1 3.8364 3.1228 0.8904 41 1 3.8357 3.1239 -0.8895 42 1 6.0068 4.4496 -0.0091 43 1 8.2066 2.9210 0.8864 44 1 8.2054 2.9136 -0.8935 45 1 7.6498 5.1725 1.9042 46 1 6.6667 7.6226 3.9435 47 1 9.9596 4.4536 2.2290 48 1 12.4057 4.2546 2.4291 49 1 13.8244 4.4429 0.4253 50 1 12.7963 4.8220 -1.7798 51 1 10.3495 5.0120 -1.9812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664587726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:38 Heat of formation + Delta-G solvation = -55.358895 kcal Electronic energy + Delta-G solvation = -29095.903596 eV Core-core repulsion = 25188.308325 eV Total energy + Delta-G solvation = -3907.595270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01966 -38.92716 -38.17737 -36.16770 -35.14058 -33.56149 -32.04588 -30.42065 -29.58975 -28.92931 -27.48802 -27.02534 -26.75006 -25.43396 -23.71822 -22.74711 -21.93608 -20.31251 -19.99997 -18.96363 -17.42912 -16.92600 -16.45319 -16.24697 -15.95129 -15.54997 -15.37693 -15.08824 -14.85260 -14.60344 -14.18358 -13.91899 -13.78127 -13.49892 -13.41732 -13.08507 -12.88772 -12.83522 -12.49521 -12.34725 -12.20464 -12.00871 -11.74913 -11.59101 -11.27315 -11.01158 -10.94023 -10.88918 -10.84862 -10.73046 -10.67026 -10.59659 -10.46952 -10.19877 -9.82367 -9.77131 -9.24809 -9.08057 -8.60389 -8.41283 -8.19503 -7.15923 -5.89369 -3.20734 1.85535 1.92187 2.95753 3.35687 3.38272 3.42138 3.42666 3.85359 4.30326 4.48305 4.74089 4.80826 4.94835 5.13803 5.14909 5.23594 5.28995 5.32969 5.34626 5.38861 5.41415 5.45455 5.46117 5.55469 5.56548 5.61652 5.64621 5.77631 5.81272 5.87526 6.03393 6.07383 6.08974 6.13411 6.21316 6.25827 6.35535 6.42044 6.47926 6.60497 6.62372 6.64745 6.89778 6.95336 7.02477 7.03807 7.27628 7.52279 7.60609 7.93891 8.26836 8.60848 9.39886 9.89874 10.26607 11.31843 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.003048 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.752754 B = 9183.156618 C =11312.150612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.070 3.930 4 C -0.041 4.041 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.135 4.135 8 C 0.515 3.485 9 O -0.543 6.543 10 N -0.714 5.714 11 C 0.122 3.878 12 C 0.198 3.802 13 H 0.064 0.936 14 N -0.713 5.713 15 C -0.244 4.244 16 H 0.070 0.930 17 C -0.005 4.005 18 N -0.928 5.928 19 Si 0.905 3.095 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.082 4.082 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.120 4.120 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.410 0.590 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.123 0.877 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 -10.308 -7.771 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.007 4.007 4 C -0.041 4.041 5 C -0.205 4.205 6 C -0.206 4.206 7 C -0.175 4.175 8 C 0.302 3.698 9 O -0.422 6.422 10 N -0.365 5.365 11 C -0.003 4.003 12 C 0.087 3.913 13 H 0.082 0.918 14 N -0.354 5.354 15 C -0.375 4.375 16 H 0.088 0.912 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.736 3.264 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.086 4.086 24 C -0.101 4.101 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.148 4.148 28 C -0.139 4.139 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.222 0.778 46 H 0.067 0.933 47 H 0.141 0.859 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.130 0.870 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.551 -11.039 -7.781 14.252 hybrid contribution -0.465 1.917 0.402 2.013 sum -5.016 -9.123 -7.378 12.760 Atomic orbital electron populations 1.22714 0.81534 1.02494 0.99809 1.87884 1.19079 1.27925 1.95338 1.22619 0.93676 0.84470 0.99928 1.20210 0.91536 0.94104 0.98292 1.22017 1.03954 0.99711 0.94786 1.22028 1.04008 0.99663 0.94889 1.21675 0.92851 0.98381 1.04575 1.20382 0.89180 0.84252 0.76005 1.90551 1.75098 1.26301 1.50236 1.46010 1.07049 1.09488 1.74002 1.21548 0.79499 0.97453 1.01792 1.19479 0.87743 0.90297 0.93788 0.91765 1.42445 1.73142 1.03363 1.16482 1.19139 1.35120 0.82237 1.01011 0.91184 1.24711 1.01324 0.97806 0.96313 1.69640 1.47031 1.34462 1.06431 0.86307 0.77699 0.85662 0.76716 1.21201 1.21710 1.21260 1.20991 0.98022 0.96606 0.92932 1.21005 0.94239 0.97101 0.97797 1.21108 0.94181 1.01240 0.98066 1.20980 0.99040 1.02135 0.93104 1.20979 0.94966 1.01741 0.97132 1.21008 0.93543 1.01237 0.98141 0.89845 0.94224 0.94302 0.93268 0.93449 0.89646 0.92482 0.94011 0.93758 0.92513 0.89605 0.88593 0.89038 0.75354 0.91671 0.91631 0.77845 0.93334 0.85918 0.86868 0.87096 0.87010 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.43 9.35 -35.23 -0.33 -4.76 16 3 C 0.07 0.75 4.81 37.16 0.18 0.93 16 4 C -0.04 -0.50 0.60 -154.51 -0.09 -0.59 16 5 C -0.15 -1.89 8.03 37.15 0.30 -1.59 16 6 C -0.15 -2.02 8.03 37.16 0.30 -1.72 16 7 C -0.13 -1.62 4.77 -27.88 -0.13 -1.76 16 8 C 0.52 7.74 7.24 -10.98 -0.08 7.66 16 9 O -0.54 -9.41 11.35 5.56 0.06 -9.34 16 10 N -0.71 -10.97 5.39 -60.29 -0.32 -11.30 16 11 C 0.12 1.98 5.21 -4.04 -0.02 1.96 16 12 C 0.20 3.55 2.65 -69.09 -0.18 3.36 16 13 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 14 N -0.71 -15.65 3.79 -54.56 -0.21 -15.86 16 15 C -0.24 -6.14 9.92 -15.06 -0.15 -6.29 16 16 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 18 N -0.93 -25.96 13.06 55.49 0.72 -25.23 16 19 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 C -0.08 -1.45 4.92 -104.62 -0.52 -1.97 16 24 C -0.08 -1.52 9.33 -39.58 -0.37 -1.89 16 25 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 26 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 27 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 28 C -0.12 -1.91 9.67 -39.58 -0.38 -2.30 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.26 5.51 -51.93 -0.29 0.98 16 35 H 0.06 0.73 7.68 -51.93 -0.40 0.34 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 39 H 0.09 1.34 5.51 -51.93 -0.29 1.06 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.41 6.35 8.14 -40.82 -0.33 6.02 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.39 9.20 7.80 -40.82 -0.32 8.88 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.12 2.40 7.71 -52.48 -0.40 2.00 16 48 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 49 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 50 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 51 H 0.11 1.59 8.04 -52.49 -0.42 1.16 16 LS Contribution 411.52 15.07 6.20 6.20 Total: -1.00 -29.04 411.52 -8.95 -37.99 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -8.72 Total: 16.21 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.33 Total: -10.17 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.19 Total: -52.39 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.27 Total: -14.10 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.04 -8.95 -37.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664587726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.367 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds