Wall clock time and date at job start Sat Apr 11 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47227 * 2 1 4 4 C 1.52995 * 109.47178 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47259 * 179.97438 * 4 3 2 6 6 C 1.35721 * 117.00131 * 179.97438 * 5 4 3 7 7 C 1.38996 * 119.90981 * 0.25406 * 6 5 4 8 8 C 1.37698 * 120.08831 * 180.21329 * 7 6 5 9 9 C 1.39730 * 119.90832 * 359.50901 * 8 7 6 10 10 C 1.47606 * 120.09030 * 180.23368 * 9 8 7 11 11 O 1.21586 * 119.99969 * 140.64812 * 10 9 8 12 12 N 1.34780 * 119.99996 * 320.65445 * 10 9 8 13 13 C 1.46503 * 119.99538 * 4.86870 * 12 10 9 14 14 C 1.46492 * 119.99918 * 184.86493 * 12 10 9 15 15 H 1.08998 * 109.47503 * 0.02562 * 14 12 10 16 16 C 1.53004 * 109.46899 * 120.00039 * 14 12 10 17 17 C 1.53000 * 109.47159 * 239.99952 * 14 12 10 18 18 N 1.46500 * 109.47221 * 55.00438 * 17 14 12 19 19 C 1.36934 * 120.00226 * 180.02562 * 18 17 14 20 20 H 1.08004 * 119.99940 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00187 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00077 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46751 * 90.00381 * 23 21 19 25 25 H 1.48499 * 109.47011 * 210.00368 * 23 21 19 26 26 H 1.48502 * 109.47129 * 330.00522 * 23 21 19 27 27 C 1.39736 * 119.82646 * 0.25921 * 9 8 7 28 28 C 1.37697 * 119.90937 * 359.97438 * 27 9 8 29 29 H 1.09001 * 109.47358 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46708 * 299.99774 * 1 2 3 31 31 H 1.09001 * 109.47164 * 59.99656 * 1 2 3 32 32 H 1.08999 * 109.46708 * 240.00226 * 2 1 3 33 33 H 1.09001 * 109.47164 * 120.00344 * 2 1 3 34 34 H 1.09001 * 109.47560 * 59.99860 * 3 2 1 35 35 H 1.09001 * 109.47329 * 300.00243 * 3 2 1 36 36 H 1.09002 * 109.47493 * 59.99828 * 4 3 2 37 37 H 1.09006 * 109.46826 * 299.99650 * 4 3 2 38 38 H 1.08003 * 119.95658 * 359.97438 * 7 6 5 39 39 H 1.07997 * 120.04378 * 179.79485 * 8 7 6 40 40 H 1.08999 * 109.47079 * 85.66945 * 13 12 10 41 41 H 1.09004 * 109.46427 * 205.67273 * 13 12 10 42 42 H 1.08998 * 109.47261 * 325.66713 * 13 12 10 43 43 H 1.09004 * 109.47318 * 179.97438 * 16 14 12 44 44 H 1.08996 * 109.47035 * 300.00476 * 16 14 12 45 45 H 1.09008 * 109.46824 * 59.99744 * 16 14 12 46 46 H 1.09004 * 109.47040 * 175.00666 * 17 14 12 47 47 H 1.09005 * 109.47102 * 294.99890 * 17 14 12 48 48 H 0.97000 * 119.99785 * 359.97438 * 18 17 14 49 49 H 0.97003 * 120.00093 * 179.97438 * 22 21 19 50 50 H 1.08005 * 120.04482 * 180.02562 * 27 9 8 51 51 H 1.08003 * 119.95454 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3919 2.9675 -0.0013 7 6 6.2368 1.8639 -0.0062 8 6 7.6025 2.0400 -0.0018 9 6 8.1386 3.3304 -0.0029 10 6 9.6019 3.5238 -0.0035 11 8 10.0977 4.4102 -0.6720 12 7 10.3885 2.7178 0.7369 13 6 9.8037 1.5842 1.4575 14 6 11.8282 2.9752 0.8209 15 1 12.0758 3.8532 0.2243 16 6 12.2175 3.2240 2.2795 17 6 12.5950 1.7632 0.2880 18 7 12.1354 1.4521 -1.0678 19 6 12.6821 0.3990 -1.7513 20 1 13.4519 -0.2026 -1.2907 21 6 12.2464 0.1039 -3.0357 22 7 11.3080 0.8366 -3.5969 23 14 12.9928 -1.3323 -3.9684 24 1 12.2119 -2.5640 -3.6880 25 1 12.9606 -1.0467 -5.4253 26 1 14.3990 -1.5280 -3.5332 27 6 7.2857 4.4373 -0.0029 28 6 5.9212 4.2527 -0.0024 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9285 0.8892 38 1 5.8217 0.8668 -0.0095 39 1 8.2584 1.1820 -0.0023 40 1 9.7433 0.7229 0.7922 41 1 10.4290 1.3376 2.3155 42 1 8.8036 1.8489 1.8009 43 1 13.2888 3.4151 2.3422 44 1 11.6711 4.0874 2.6591 45 1 11.9698 2.3462 2.8765 46 1 13.6613 1.9881 0.2676 47 1 12.4168 0.9062 0.9377 48 1 11.4433 1.9916 -1.4810 49 1 11.0037 0.6306 -4.4946 50 1 7.6963 5.4363 -0.0042 51 1 5.2613 5.1077 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667048583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:40 Heat of formation + Delta-G solvation = -38.835495 kcal Electronic energy + Delta-G solvation = -28952.203093 eV Core-core repulsion = 25045.324331 eV Total energy + Delta-G solvation = -3906.878762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50945 -39.53918 -37.40569 -36.20578 -35.39885 -33.99141 -32.23467 -31.00551 -30.45992 -29.98087 -28.96853 -26.75615 -25.59511 -24.64148 -23.37811 -22.62655 -22.29351 -21.36125 -20.67313 -19.02805 -18.15744 -17.16753 -17.02660 -16.65347 -16.30470 -15.78555 -15.09880 -14.99184 -14.67216 -14.62404 -14.15665 -14.01518 -13.63522 -13.60433 -13.49303 -13.23414 -13.09241 -12.77016 -12.52416 -12.38923 -12.31544 -12.25132 -12.08756 -11.89719 -11.75774 -11.52447 -11.49735 -11.41046 -11.18644 -10.83638 -10.81091 -10.74673 -10.71298 -10.39511 -10.01660 -9.65960 -9.42902 -9.01896 -8.83708 -8.25469 -8.12892 -6.85716 -5.68899 -2.98702 1.12379 1.36902 2.94654 3.12063 3.36533 3.45043 3.50263 3.52663 3.87402 4.47370 4.48124 4.62004 4.64750 4.76459 4.81714 4.85847 4.85973 5.00928 5.13832 5.24354 5.30865 5.34783 5.37378 5.37701 5.40638 5.45964 5.51307 5.59479 5.63147 5.64099 5.70193 5.74708 5.80166 5.89053 5.93583 6.00957 6.08293 6.12375 6.20069 6.23498 6.30367 6.41678 6.47302 6.52518 6.66461 6.77638 7.05438 7.28204 7.73310 7.78956 8.48185 8.60903 9.59570 10.19175 10.54674 11.52829 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.002873 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.311520 B = 9744.449794 C =11558.624289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.056 3.944 5 O -0.315 6.315 6 C 0.146 3.854 7 C -0.217 4.217 8 C -0.044 4.044 9 C -0.157 4.157 10 C 0.565 3.435 11 O -0.534 6.534 12 N -0.592 5.592 13 C 0.076 3.924 14 C 0.125 3.875 15 H 0.101 0.899 16 C -0.155 4.155 17 C 0.144 3.856 18 N -0.728 5.728 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.927 5.927 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.029 4.029 28 C -0.163 4.163 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.027 0.973 47 H 0.020 0.980 48 H 0.387 0.613 49 H 0.254 0.746 50 H 0.136 0.864 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 1.624 14.210 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.019 4.019 5 O -0.229 6.229 6 C 0.100 3.900 7 C -0.235 4.235 8 C -0.062 4.062 9 C -0.161 4.161 10 C 0.353 3.647 11 O -0.412 6.412 12 N -0.325 5.325 13 C -0.067 4.067 14 C 0.022 3.978 15 H 0.119 0.881 16 C -0.214 4.214 17 C 0.016 3.984 18 N -0.373 5.373 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.575 5.575 23 Si 0.736 3.264 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.048 4.048 28 C -0.181 4.181 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.222 0.778 49 H 0.064 0.936 50 H 0.154 0.846 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.762 2.090 13.809 22.596 hybrid contribution 0.286 -1.104 -0.817 1.403 sum -17.476 0.986 12.992 21.799 Atomic orbital electron populations 1.21749 0.95207 1.01889 1.02055 1.21443 0.96406 0.95601 1.02598 1.21577 0.92523 0.97807 1.03739 1.22893 0.95342 0.81866 1.01805 1.85990 1.19215 1.29396 1.88253 1.19192 0.82052 0.94203 0.94547 1.21169 0.94051 0.98120 1.10189 1.21556 0.94722 0.97088 0.92848 1.19833 0.93446 0.94132 1.08648 1.18144 0.86104 0.81471 0.78951 1.90783 1.75357 1.34090 1.40931 1.47534 1.07738 1.28705 1.48478 1.22036 0.98515 0.89363 0.96810 1.21402 0.79185 1.00726 0.96455 0.88139 1.22072 1.01779 1.01559 0.95969 1.21001 0.95672 0.93379 0.88380 1.42318 1.46913 1.36297 1.11733 1.19198 1.16107 1.05490 0.96399 0.91337 1.24753 0.99340 0.99428 0.97422 1.69700 1.31870 1.40725 1.15248 0.86227 0.78551 0.82220 0.79394 1.21861 1.21819 1.20836 1.20953 0.91576 0.98604 0.93649 1.20289 0.94856 0.94759 1.08222 0.92458 0.92594 0.92528 0.91512 0.91612 0.90848 0.90770 0.91690 0.91839 0.85119 0.83923 0.91658 0.91205 0.91296 0.91348 0.92615 0.92371 0.95504 0.96263 0.77824 0.93584 0.84598 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.84 5.58 -26.74 -0.15 -0.99 16 4 C 0.06 0.49 4.73 37.15 0.18 0.67 16 5 O -0.32 -3.68 10.12 -18.87 -0.19 -3.87 16 6 C 0.15 1.88 6.70 -39.02 -0.26 1.62 16 7 C -0.22 -2.78 9.01 -39.50 -0.36 -3.14 16 8 C -0.04 -0.65 7.55 -39.22 -0.30 -0.94 16 9 C -0.16 -2.58 5.23 -104.96 -0.55 -3.13 16 10 C 0.56 10.88 7.04 -12.44 -0.09 10.79 16 11 O -0.53 -12.29 16.25 5.29 0.09 -12.20 16 12 N -0.59 -10.21 2.24 -175.13 -0.39 -10.60 16 13 C 0.08 1.05 8.01 59.85 0.48 1.53 16 14 C 0.13 2.20 2.79 -67.93 -0.19 2.01 16 15 H 0.10 2.01 6.91 -51.93 -0.36 1.66 16 16 C -0.16 -2.01 9.18 37.16 0.34 -1.67 16 17 C 0.14 2.96 5.56 -4.04 -0.02 2.94 16 18 N -0.73 -19.13 5.43 -59.91 -0.33 -19.45 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 23 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.03 -0.42 9.62 -39.22 -0.38 -0.80 16 28 C -0.16 -2.10 9.97 -39.50 -0.39 -2.49 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.56 7.64 -51.93 -0.40 0.17 16 37 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 38 H 0.13 1.38 6.28 -52.48 -0.33 1.05 16 39 H 0.14 2.14 5.31 -52.49 -0.28 1.86 16 40 H 0.07 1.00 6.89 -51.93 -0.36 0.65 16 41 H 0.07 0.83 6.43 -51.93 -0.33 0.49 16 42 H 0.07 0.82 5.81 -51.93 -0.30 0.52 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.68 6.66 -51.92 -0.35 0.33 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 48 H 0.39 11.14 7.06 -40.82 -0.29 10.85 16 49 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.14 1.84 8.05 -52.48 -0.42 1.42 16 51 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 408.48 15.07 6.16 6.16 Total: -1.00 -34.88 408.48 -9.11 -43.98 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.42 Total: 8.98 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.72 Total: -2.44 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.01 Total: -58.42 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.11 Total: -16.07 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.88 -9.11 -43.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667048583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.149 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds