Wall clock time and date at job start Sat Apr 11 2020 04:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46674 * 2 1 4 4 H 1.09001 * 109.47438 * 55.90403 * 3 2 1 5 5 N 1.46903 * 109.47513 * 295.89630 * 3 2 1 6 6 C 1.46892 * 111.00004 * 157.37940 * 5 3 2 7 7 H 1.09006 * 109.47153 * 329.53461 * 6 5 3 8 8 C 1.53003 * 109.47019 * 89.53374 * 6 5 3 9 9 C 1.50704 * 109.47412 * 209.53415 * 6 5 3 10 10 O 1.21280 * 119.99382 * 332.54842 * 9 6 5 11 11 N 1.34777 * 120.00145 * 152.54202 * 9 6 5 12 12 C 1.46503 * 119.99654 * 183.56672 * 11 9 6 13 13 C 1.46501 * 119.99830 * 3.56319 * 11 9 6 14 14 C 1.50700 * 109.46719 * 88.01186 * 13 11 9 15 15 H 1.08003 * 120.00105 * 359.97438 * 14 13 11 16 16 C 1.37876 * 119.99848 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99894 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00172 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47163 * 59.99790 * 18 16 14 20 20 H 1.48501 * 109.47393 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47070 * 299.99982 * 18 16 14 22 22 C 1.50708 * 109.46833 * 175.90011 * 3 2 1 23 23 C 1.38162 * 120.02617 * 90.21531 * 22 3 2 24 24 C 1.38251 * 120.05292 * 179.97438 * 23 22 3 25 25 C 1.38291 * 120.11026 * 0.02562 * 24 23 22 26 26 C 1.38119 * 120.05489 * 0.02860 * 25 24 23 27 27 C 1.38710 * 120.02733 * 269.93999 * 22 3 2 28 28 O 1.35905 * 120.05453 * 0.02562 * 27 22 3 29 29 C 1.42902 * 116.99993 * 179.97438 * 28 27 22 30 30 H 1.08998 * 109.46972 * 305.12787 * 1 2 3 31 31 H 1.08993 * 109.47468 * 65.12846 * 1 2 3 32 32 H 1.08996 * 109.46815 * 185.13502 * 1 2 3 33 33 H 1.09005 * 109.47072 * 240.00471 * 2 1 3 34 34 H 1.08996 * 109.47394 * 120.00079 * 2 1 3 35 35 H 1.00902 * 111.00052 * 281.33401 * 5 3 2 36 36 H 1.09001 * 109.46900 * 58.46069 * 8 6 5 37 37 H 1.09011 * 109.46873 * 178.45931 * 8 6 5 38 38 H 1.08993 * 109.47300 * 298.45637 * 8 6 5 39 39 H 1.08999 * 109.46939 * 274.74442 * 12 11 9 40 40 H 1.08995 * 109.47367 * 34.74160 * 12 11 9 41 41 H 1.08997 * 109.46631 * 154.75130 * 12 11 9 42 42 H 1.08997 * 109.46796 * 208.00576 * 13 11 9 43 43 H 1.08989 * 109.47509 * 328.00851 * 13 11 9 44 44 H 0.97006 * 120.00022 * 179.97438 * 17 16 14 45 45 H 1.07995 * 119.97491 * 359.97438 * 23 22 3 46 46 H 1.07998 * 119.94160 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.97044 * 180.02562 * 25 24 23 48 48 H 1.08003 * 120.02523 * 179.97438 * 26 25 24 49 49 H 1.08995 * 109.46690 * 180.02562 * 29 28 27 50 50 H 1.09000 * 109.46962 * 299.99841 * 29 28 27 51 51 H 1.08997 * 109.46870 * 59.99868 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6179 1.9772 0.8510 5 7 1.6328 2.1059 -1.2459 6 6 1.6111 3.5655 -1.0824 7 1 1.3652 3.8118 -0.0493 8 6 2.9868 4.1382 -1.4295 9 6 0.5738 4.1586 -2.0007 10 8 0.2777 3.5885 -3.0294 11 7 -0.0249 5.3224 -1.6788 12 6 -1.0885 5.8593 -2.5313 13 6 0.3878 6.0504 -0.4763 14 6 1.5301 6.9731 -0.8152 15 1 1.9108 7.0130 -1.8251 16 6 2.0892 7.7665 0.1641 17 7 1.6252 7.7183 1.3938 18 14 3.5055 8.9098 -0.2556 19 1 3.0699 9.8766 -1.2953 20 1 3.9231 9.6487 0.9629 21 1 4.6492 8.1134 -0.7685 22 6 3.5436 1.4438 0.1016 23 6 4.3140 1.4204 -1.0450 24 6 5.6934 1.4221 -0.9525 25 6 6.3055 1.4466 0.2873 26 6 5.5397 1.4690 1.4365 27 6 4.1552 1.4743 1.3462 28 8 3.3995 1.5025 2.4754 29 6 4.0970 1.5324 3.7223 30 1 -0.3633 0.5913 0.8405 31 1 -0.3634 0.4322 -0.9323 32 1 -0.3633 -1.0235 0.0920 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.2324 1.8367 -2.0115 36 1 3.2446 3.8686 -2.4537 37 1 2.9629 5.2239 -1.3346 38 1 3.7328 3.7302 -0.7477 39 1 -0.6466 6.4364 -3.3435 40 1 -1.6720 5.0372 -2.9455 41 1 -1.7381 6.5039 -1.9392 42 1 -0.4516 6.6346 -0.0993 43 1 0.7081 5.3406 0.2862 44 1 2.0188 8.2763 2.0829 45 1 3.8383 1.4008 -2.0144 46 1 6.2939 1.4041 -1.8500 47 1 7.3833 1.4483 0.3570 48 1 6.0183 1.4878 2.4046 49 1 3.3774 1.5525 4.5407 50 1 4.7220 0.6438 3.8103 51 1 4.7235 2.4232 3.7668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775072285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:06 Heat of formation + Delta-G solvation = -44.011561 kcal Electronic energy + Delta-G solvation = -30892.682598 eV Core-core repulsion = 26985.579385 eV Total energy + Delta-G solvation = -3907.103213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50980 -39.11168 -37.74427 -36.34407 -34.81209 -33.18339 -32.50052 -30.98865 -30.10029 -28.91329 -27.61041 -27.25930 -26.12089 -25.22110 -23.11419 -22.66475 -22.13506 -21.72798 -20.24314 -18.36855 -17.96240 -16.56320 -16.43775 -16.30836 -15.78255 -15.73153 -15.49358 -14.68308 -14.61948 -14.44104 -14.20892 -14.07774 -13.69189 -13.56605 -13.08886 -12.90478 -12.61286 -12.59650 -12.17964 -12.17354 -12.09015 -11.76622 -11.67643 -11.56417 -11.44613 -11.32529 -11.26611 -11.08758 -10.93657 -10.91697 -10.81413 -10.64935 -10.52363 -10.45129 -10.07216 -9.73034 -8.96729 -8.72339 -8.55526 -8.11902 -7.95463 -7.59826 -6.18367 -4.24333 1.32373 1.47085 3.22658 3.27568 3.28358 3.30320 3.57849 3.76598 3.93457 4.32295 4.66613 4.71960 4.80848 4.98973 5.04450 5.10648 5.13720 5.24584 5.35363 5.40894 5.41800 5.45441 5.52481 5.63112 5.69265 5.73793 5.86466 5.94039 6.02511 6.08040 6.14760 6.20569 6.23060 6.28133 6.35643 6.37616 6.42623 6.47269 6.48763 6.56852 6.68128 6.77145 6.81391 6.98750 7.19741 7.34882 7.41212 7.63188 7.75585 7.78013 8.07209 8.43556 8.81345 9.18886 9.42164 10.87861 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.004907 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.588304 B = 5704.886721 C = 7148.273144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C 0.136 3.864 4 H 0.093 0.907 5 N -0.660 5.660 6 C 0.078 3.922 7 H 0.101 0.899 8 C -0.182 4.182 9 C 0.528 3.472 10 O -0.566 6.566 11 N -0.604 5.604 12 C 0.098 3.902 13 C 0.237 3.763 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.134 4.134 23 C -0.077 4.077 24 C -0.154 4.154 25 C -0.086 4.086 26 C -0.208 4.208 27 C 0.135 3.865 28 O -0.310 6.310 29 C 0.028 3.972 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.343 0.657 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.265 0.735 45 H 0.128 0.872 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.099 0.901 50 H 0.052 0.948 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -13.652 2.655 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C 0.025 3.975 4 H 0.111 0.889 5 N -0.292 5.292 6 C -0.034 4.034 7 H 0.119 0.881 8 C -0.241 4.241 9 C 0.315 3.685 10 O -0.446 6.446 11 N -0.336 5.336 12 C -0.045 4.045 13 C 0.117 3.883 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.137 4.137 23 C -0.096 4.096 24 C -0.172 4.172 25 C -0.104 4.104 26 C -0.227 4.227 27 C 0.089 3.911 28 O -0.223 6.223 29 C -0.067 4.067 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.146 0.854 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.118 0.882 50 H 0.070 0.930 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.969 -13.914 2.456 14.977 hybrid contribution 2.245 1.213 0.181 2.558 sum 7.214 -12.701 2.637 14.843 Atomic orbital electron populations 1.21642 0.95096 1.00210 1.02964 1.21411 0.96589 0.94487 1.01215 1.20574 0.87405 0.96001 0.93511 0.88930 1.60403 1.57487 1.06062 1.05241 1.21433 0.94648 0.87034 1.00323 0.88115 1.22585 0.95240 1.05983 1.00307 1.20301 0.81693 0.80257 0.86213 1.90549 1.65106 1.62307 1.26629 1.48114 1.36069 1.21835 1.27569 1.21378 0.90238 0.98267 0.94645 1.19463 0.95840 0.91617 0.81414 1.21422 1.16860 1.22931 0.95947 0.92060 1.24919 0.97115 0.96787 0.94838 1.69913 1.41669 1.39854 1.01297 0.86652 0.82578 0.81005 0.77855 1.20083 1.21148 1.20042 1.20137 0.98077 1.05106 0.90361 1.20816 0.93628 0.97562 0.97568 1.20976 0.94533 1.04149 0.97568 1.20874 0.99431 0.98089 0.92049 1.21199 0.92676 1.09158 0.99661 1.18806 0.89538 0.96279 0.86448 1.86099 1.35004 1.88399 1.12809 1.23041 0.98558 1.01064 0.84028 0.93177 0.91256 0.93851 0.92264 0.92168 0.83577 0.93415 0.88109 0.92247 0.93796 0.92402 0.91802 0.94726 0.94447 0.92512 0.85437 0.86057 0.86142 0.85725 0.88225 0.92984 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.73 37.16 0.36 -1.50 16 2 C -0.10 -1.29 5.60 -26.73 -0.15 -1.44 16 3 C 0.14 2.02 2.00 -68.86 -0.14 1.88 16 4 H 0.09 1.55 6.83 -51.93 -0.35 1.19 16 5 N -0.66 -10.96 5.17 -102.16 -0.53 -11.49 16 6 C 0.08 1.50 2.32 -68.87 -0.16 1.34 16 7 H 0.10 2.09 5.28 -51.93 -0.27 1.81 16 8 C -0.18 -3.47 8.17 37.16 0.30 -3.16 16 9 C 0.53 11.53 6.85 -10.98 -0.08 11.45 16 10 O -0.57 -13.35 16.35 5.56 0.09 -13.26 16 11 N -0.60 -13.26 2.86 -182.96 -0.52 -13.78 16 12 C 0.10 1.89 10.39 59.85 0.62 2.51 16 13 C 0.24 5.67 5.03 -5.19 -0.03 5.64 16 14 C -0.53 -13.67 7.11 -34.44 -0.25 -13.91 16 15 H 0.06 1.61 7.55 -52.48 -0.40 1.21 16 16 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 18 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.13 -1.92 3.69 -104.47 -0.39 -2.30 16 23 C -0.08 -1.02 7.15 -39.60 -0.28 -1.30 16 24 C -0.15 -1.84 10.04 -39.56 -0.40 -2.24 16 25 C -0.09 -1.00 10.04 -39.61 -0.40 -1.39 16 26 C -0.21 -2.55 9.04 -39.44 -0.36 -2.91 16 27 C 0.14 1.90 6.66 -39.22 -0.26 1.63 16 28 O -0.31 -4.25 9.54 -19.44 -0.19 -4.43 16 29 C 0.03 0.27 9.81 101.05 0.99 1.26 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.34 5.44 5.76 -39.29 -0.23 5.22 16 36 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.10 2.21 5.32 -51.92 -0.28 1.93 16 38 H 0.06 1.07 5.56 -51.93 -0.29 0.78 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.07 7.62 -51.93 -0.40 0.67 16 41 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 42 H 0.03 0.87 7.83 -51.93 -0.41 0.46 16 43 H 0.04 0.93 5.85 -51.94 -0.30 0.63 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.13 1.59 6.03 -52.49 -0.32 1.28 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 48 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 51 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -29.67 399.50 -8.22 -37.90 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.12 Total: 9.93 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.69 Total: -2.80 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.32 Total: -48.79 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.09 Total: -17.70 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.67 -8.22 -37.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775072285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.115 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds