Wall clock time and date at job start Sat Apr 11 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99885 * 2 1 4 4 N 1.46902 * 109.47151 * 232.84437 * 3 2 1 5 5 C 1.46897 * 111.00031 * 200.10481 * 4 3 2 6 6 C 1.50701 * 109.47280 * 69.10891 * 5 4 3 7 7 H 1.07997 * 119.99771 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00267 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00010 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00286 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.46965 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47169 * 119.99852 * 10 8 6 13 13 H 1.48490 * 109.47373 * 240.00401 * 10 8 6 14 14 C 1.46899 * 111.00079 * 76.15440 * 4 3 2 15 15 N 1.46506 * 109.47005 * 258.12213 * 14 4 3 16 16 C 1.34064 * 133.14688 * 80.48366 * 15 14 4 17 17 O 1.21278 * 133.46018 * 359.97438 * 16 15 14 18 18 C 1.49200 * 93.09400 * 179.97438 * 16 15 14 19 19 C 1.53016 * 121.91741 * 234.87425 * 18 16 15 20 20 C 1.53928 * 86.81614 * 258.03036 * 19 18 16 21 21 C 1.53008 * 121.92157 * 125.12305 * 18 16 15 22 22 C 1.45905 * 133.14824 * 260.13304 * 15 14 4 23 23 H 1.09004 * 113.53248 * 294.70741 * 22 15 14 24 24 C 1.53001 * 113.53685 * 65.35726 * 22 15 14 25 25 H 1.09000 * 110.27716 * 177.32040 * 24 22 15 26 26 C 1.54945 * 110.30945 * 299.51757 * 24 22 15 27 27 C 1.55310 * 100.94192 * 155.35866 * 26 24 22 28 28 C 1.54384 * 102.25212 * 325.86815 * 27 26 24 29 29 O 1.43243 * 107.58948 * 21.35443 * 28 27 26 30 30 H 1.07997 * 120.00418 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99660 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.00418 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47150 * 352.84471 * 3 2 1 34 34 H 1.09000 * 109.47509 * 112.84282 * 3 2 1 35 35 H 1.09008 * 109.47343 * 189.11306 * 5 4 3 36 36 H 1.09002 * 109.47581 * 309.10910 * 5 4 3 37 37 H 0.96999 * 120.00060 * 179.97438 * 9 8 6 38 38 H 1.09008 * 109.47216 * 18.11597 * 14 4 3 39 39 H 1.08997 * 109.47597 * 138.11540 * 14 4 3 40 40 H 1.08994 * 113.65796 * 12.51066 * 19 18 16 41 41 H 1.08996 * 113.65641 * 143.54800 * 19 18 16 42 42 H 1.09001 * 113.58516 * 220.58771 * 20 19 18 43 43 H 1.09004 * 113.58193 * 89.78304 * 20 19 18 44 44 H 1.08996 * 113.65749 * 216.44490 * 21 18 16 45 45 H 1.09005 * 113.65817 * 347.49026 * 21 18 16 46 46 H 1.08993 * 111.12827 * 273.27694 * 26 24 22 47 47 H 1.08996 * 111.12594 * 37.43944 * 26 24 22 48 48 H 1.08994 * 110.84548 * 207.68116 * 27 26 24 49 49 H 1.08996 * 110.84760 * 84.05502 * 27 26 24 50 50 H 1.09003 * 109.82992 * 261.84415 * 28 27 26 51 51 H 1.08991 * 109.90492 * 140.91094 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0327 1.3109 -1.1038 5 6 4.0880 2.3063 -0.8726 6 6 4.9553 1.8612 0.2766 7 1 4.7440 0.9316 0.7841 8 6 6.0192 2.6401 0.6794 9 7 6.2768 3.7719 0.0612 10 14 7.0948 2.0880 2.1034 11 1 6.5981 0.7890 2.6242 12 1 8.4948 1.9298 1.6340 13 1 7.0469 3.1057 3.1836 14 6 2.3635 1.5426 -2.3909 15 7 2.2251 0.2710 -3.1052 16 6 1.3545 -0.7440 -3.0100 17 8 0.3912 -0.9533 -2.3037 18 6 2.0158 -1.5197 -4.0995 19 6 1.2431 -2.0149 -5.3239 20 6 1.2347 -3.3997 -4.6516 21 6 2.4980 -2.9569 -3.8916 22 6 2.9803 -0.3535 -4.1862 23 1 2.9218 0.1907 -5.1289 24 6 4.4150 -0.7172 -3.7985 25 1 4.9138 -1.2211 -4.6264 26 6 5.2000 0.5542 -3.3886 27 6 6.2917 -0.0572 -2.4686 28 6 5.5384 -1.2265 -1.7987 29 8 4.4191 -1.5534 -2.6306 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3620 2.1296 -0.1280 34 1 2.5906 1.4204 0.9470 35 1 4.6975 2.4052 -1.7709 36 1 3.6342 3.2682 -0.6339 37 1 7.0251 4.3201 0.3448 38 1 1.3762 1.9700 -2.2153 39 1 2.9570 2.2333 -2.9899 40 1 0.2524 -1.5717 -5.4245 41 1 1.8197 -1.9809 -6.2482 42 1 1.4089 -4.2222 -5.3453 43 1 0.3727 -3.5655 -4.0055 44 1 3.4262 -3.1868 -4.4147 45 1 2.5110 -3.2670 -2.8467 46 1 5.6449 1.0385 -4.2578 47 1 4.5648 1.2474 -2.8373 48 1 6.6228 0.6676 -1.7250 49 1 7.1333 -0.4239 -3.0562 50 1 5.1895 -0.9242 -0.8113 51 1 6.1975 -2.0900 -1.7096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793561749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:13 Heat of formation + Delta-G solvation = 26.440047 kcal Electronic energy + Delta-G solvation = -32535.409897 eV Core-core repulsion = 28631.361695 eV Total energy + Delta-G solvation = -3904.048202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60884 -38.45475 -37.46035 -36.45908 -35.47483 -33.14242 -32.13571 -31.46048 -29.72822 -28.45303 -26.76972 -25.67180 -25.01103 -24.02472 -23.25936 -21.28270 -20.96777 -20.59121 -20.01652 -19.07331 -17.53251 -16.82533 -16.56356 -16.21041 -15.89542 -15.48422 -15.05535 -14.92171 -14.62714 -14.53754 -14.05651 -13.82732 -13.66644 -13.21736 -13.00982 -12.80545 -12.50653 -12.37084 -12.23555 -12.16173 -11.82899 -11.55832 -11.44236 -11.20282 -11.02933 -10.95283 -10.92328 -10.79626 -10.75566 -10.61072 -10.28704 -10.24652 -10.10376 -9.95232 -9.81903 -9.41185 -9.28331 -8.99439 -8.53715 -8.32729 -8.25944 -7.36842 -6.12466 -4.12817 2.94878 3.11148 3.23550 3.33052 3.37516 3.42439 4.09215 4.33674 4.35597 4.58241 4.70609 4.77755 4.92196 5.04298 5.16818 5.23271 5.31772 5.36248 5.44248 5.50227 5.61144 5.67555 5.71588 5.78642 5.79086 5.82435 5.83870 5.89260 5.93395 5.98552 6.21222 6.23922 6.26553 6.31109 6.34495 6.43200 6.54752 6.61809 6.66754 6.69787 6.93571 6.97796 7.07808 7.22973 7.27802 7.39757 7.56192 7.59084 7.75395 7.99365 8.11575 8.42335 8.81216 8.95693 9.51457 10.97495 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.005055 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.378495 B = 5537.424324 C = 6469.129373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.130 4.130 3 C 0.092 3.908 4 N -0.536 5.536 5 C 0.191 3.809 6 C -0.497 4.497 7 H 0.064 0.936 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.889 3.111 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.288 3.712 15 N -0.592 5.592 16 C 0.555 3.445 17 O -0.507 6.507 18 C -0.144 4.144 19 C -0.108 4.108 20 C -0.143 4.143 21 C -0.081 4.081 22 C 0.139 3.861 23 H 0.097 0.903 24 C 0.085 3.915 25 H 0.067 0.933 26 C -0.162 4.162 27 C -0.144 4.144 28 C 0.063 3.937 29 O -0.363 6.363 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.022 0.978 34 H 0.091 0.909 35 H 0.039 0.961 36 H -0.010 1.010 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.114 0.886 48 H 0.098 0.902 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 -8.891 -11.494 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.036 4.036 4 N -0.262 5.262 5 C 0.067 3.933 6 C -0.536 4.536 7 H 0.082 0.918 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.717 3.283 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.078 3.922 15 N -0.327 5.327 16 C 0.339 3.661 17 O -0.381 6.381 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.180 4.180 21 C -0.119 4.119 22 C 0.034 3.966 23 H 0.115 0.885 24 C 0.026 3.974 25 H 0.085 0.915 26 C -0.199 4.199 27 C -0.181 4.181 28 C -0.014 4.014 29 O -0.282 6.282 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.008 0.992 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.132 0.868 48 H 0.116 0.884 49 H 0.072 0.928 50 H 0.100 0.900 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.301 -9.222 -10.937 15.256 hybrid contribution 0.825 0.942 0.754 1.461 sum -4.476 -8.280 -10.183 13.866 Atomic orbital electron populations 1.23350 0.95781 0.99975 1.01953 1.22751 0.95131 0.98368 0.98604 1.21195 0.92903 0.93131 0.96373 1.61626 1.12302 1.52573 0.99704 1.19923 0.87903 0.87753 0.97729 1.21092 1.11269 1.06335 1.14894 0.91779 1.24920 0.97617 0.94906 0.96806 1.69947 1.29709 1.12754 1.41234 0.86572 0.80364 0.78827 0.82513 1.19601 1.21085 1.21178 1.21780 0.97716 0.82692 0.90024 1.50035 1.28610 1.19016 1.35066 1.20451 0.82070 0.81161 0.82376 1.90717 1.27445 1.74891 1.45007 1.23040 0.97349 0.96322 0.98019 1.22570 0.99946 0.96602 0.95487 1.22904 0.99250 0.96335 0.99523 1.22309 0.96990 0.90910 1.01683 1.22019 0.92321 0.91477 0.90746 0.88508 1.22890 0.93640 0.91375 0.89479 0.91526 1.23627 0.98390 0.98235 0.99608 1.22930 0.97136 0.98541 0.99498 1.22988 0.87094 0.95472 0.95797 1.88392 1.48382 1.58315 1.33087 0.90455 0.89422 0.88254 0.95946 0.89110 0.94359 0.99178 0.92984 0.92711 0.90305 0.91211 0.89309 0.91445 0.89975 0.89396 0.90556 0.91773 0.86808 0.88380 0.92764 0.89976 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 11.80 29.02 0.34 -2.72 16 2 C -0.13 -2.46 7.36 -36.03 -0.27 -2.73 16 3 C 0.09 1.80 5.16 -4.98 -0.03 1.78 16 4 N -0.54 -10.54 4.11 -241.42 -0.99 -11.53 16 5 C 0.19 4.36 4.10 -4.98 -0.02 4.34 16 6 C -0.50 -12.42 8.12 -34.44 -0.28 -12.70 16 7 H 0.06 1.65 7.53 -52.49 -0.39 1.26 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -24.46 13.29 55.43 0.74 -23.73 16 10 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.29 5.00 5.41 -63.31 -0.34 4.66 16 15 N -0.59 -9.45 3.17 -188.62 -0.60 -10.05 16 16 C 0.55 9.31 8.41 -16.58 -0.14 9.17 16 17 O -0.51 -9.80 13.60 5.56 0.08 -9.72 16 18 C -0.14 -1.88 1.08 -157.15 -0.17 -2.05 16 19 C -0.11 -1.12 7.86 -26.24 -0.21 -1.32 16 20 C -0.14 -1.50 8.08 -25.76 -0.21 -1.71 16 21 C -0.08 -1.00 5.66 -26.24 -0.15 -1.14 16 22 C 0.14 1.84 4.26 -73.52 -0.31 1.53 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 24 C 0.09 1.19 3.07 -25.70 -0.08 1.11 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 C -0.16 -2.52 6.44 -24.48 -0.16 -2.68 16 27 C -0.14 -2.38 7.02 -24.78 -0.17 -2.55 16 28 C 0.06 1.06 7.79 37.88 0.30 1.36 16 29 O -0.36 -5.91 8.73 -35.23 -0.31 -6.22 16 30 H 0.08 1.31 7.85 -52.49 -0.41 0.89 16 31 H 0.09 1.54 7.92 -52.48 -0.42 1.13 16 32 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.02 0.43 7.28 -51.93 -0.38 0.05 16 34 H 0.09 1.95 6.82 -51.93 -0.35 1.59 16 35 H 0.04 0.91 5.57 -51.92 -0.29 0.62 16 36 H -0.01 -0.24 8.09 -51.93 -0.42 -0.66 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.06 0.96 7.33 -51.92 -0.38 0.58 16 39 H 0.08 1.31 6.62 -51.93 -0.34 0.96 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.99 7.84 -51.93 -0.41 0.58 16 45 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.11 2.03 1.46 -51.93 -0.08 1.96 16 48 H 0.10 1.95 7.99 -51.93 -0.41 1.54 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 51 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -27.63 388.96 -10.72 -38.35 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.49 Total: 5.85 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.99 Total: -4.24 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.85 Total: -45.31 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.23 Total: -15.94 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.63 -10.72 -38.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793561749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.794 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds