Wall clock time and date at job start Sat Apr 11 2020 04:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47422 * 2 1 4 4 N 1.46501 * 109.46878 * 120.00149 * 2 1 3 5 5 C 1.46501 * 120.00217 * 124.68427 * 4 2 1 6 6 C 1.53003 * 109.47124 * 269.99978 * 5 4 2 7 7 H 1.08998 * 109.47288 * 59.99851 * 6 5 4 8 8 O 1.42897 * 109.47157 * 299.99955 * 6 5 4 9 9 C 1.50699 * 109.46969 * 179.97438 * 6 5 4 10 10 H 1.07996 * 120.00333 * 359.72590 * 9 6 5 11 11 C 1.37879 * 119.99892 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99943 * 359.72792 * 11 9 6 13 13 Si 1.86798 * 120.00170 * 179.72543 * 11 9 6 14 14 H 1.48499 * 109.47191 * 59.99890 * 13 11 9 15 15 H 1.48499 * 109.47259 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.46990 * 300.00409 * 13 11 9 17 17 C 1.40005 * 120.00118 * 304.68352 * 4 2 1 18 18 C 1.38862 * 119.99439 * 354.54964 * 17 4 2 19 19 C 1.38094 * 119.99417 * 179.72091 * 18 17 4 20 20 C 1.38858 * 120.00017 * 0.52698 * 19 18 17 21 21 N 1.40000 * 120.00136 * 179.76564 * 20 19 18 22 22 C 1.47014 * 110.99943 * 123.61538 * 21 20 19 23 23 C 1.53106 * 109.25692 * 177.60982 * 22 21 20 24 24 O 1.43016 * 109.25629 * 56.85145 * 23 22 21 25 25 C 1.43016 * 113.73670 * 301.32505 * 24 23 22 26 26 C 1.47013 * 110.99765 * 359.97438 * 21 20 19 27 27 C 1.38856 * 120.00337 * 359.75216 * 20 19 18 28 28 C 1.38098 * 119.99863 * 359.97438 * 27 20 19 29 29 H 1.08999 * 109.46881 * 305.00580 * 1 2 3 30 30 H 1.09001 * 109.46903 * 65.00631 * 1 2 3 31 31 H 1.08999 * 109.46995 * 185.00444 * 1 2 3 32 32 H 1.09007 * 109.47197 * 239.99484 * 2 1 3 33 33 H 1.09004 * 109.47566 * 175.02423 * 3 2 1 34 34 H 1.08997 * 109.47377 * 295.02537 * 3 2 1 35 35 H 1.08995 * 109.47261 * 55.02564 * 3 2 1 36 36 H 1.08998 * 109.47159 * 149.99750 * 5 4 2 37 37 H 1.09001 * 109.47208 * 29.99782 * 5 4 2 38 38 H 0.96702 * 113.99760 * 300.00040 * 8 6 5 39 39 H 0.97000 * 120.00102 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.00272 * 0.02562 * 18 17 4 41 41 H 1.08001 * 120.00002 * 180.27511 * 19 18 17 42 42 H 1.09000 * 109.50562 * 297.54380 * 22 21 20 43 43 H 1.09002 * 109.50520 * 57.67616 * 22 21 20 44 44 H 1.08997 * 109.50449 * 296.91793 * 23 22 21 45 45 H 1.08998 * 109.50599 * 176.78385 * 23 22 21 46 46 H 1.09002 * 109.51036 * 298.73734 * 25 24 23 47 47 H 1.09005 * 109.54043 * 178.62789 * 25 24 23 48 48 H 1.08997 * 109.50960 * 302.32788 * 26 21 20 49 49 H 1.09005 * 109.50736 * 62.45765 * 26 21 20 50 50 H 1.08004 * 120.00581 * 180.02562 * 27 20 19 51 51 H 1.08001 * 120.00268 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.9431 -1.8192 1.0643 6 6 2.1467 -3.1206 0.9503 7 1 1.5008 -3.0757 0.0734 8 8 1.3475 -3.2942 2.1221 9 6 3.0981 -4.2814 0.8139 10 1 4.1640 -4.1078 0.8046 11 6 2.6076 -5.5645 0.6959 12 7 1.3096 -5.7760 0.7077 13 14 3.7866 -7.0026 0.5193 14 1 4.6727 -7.0653 1.7092 15 1 3.0136 -8.2659 0.4099 16 1 4.6108 -6.8197 -0.7025 17 6 1.6011 -0.2722 2.4654 18 6 0.8161 0.8655 2.5981 19 6 0.3998 1.2750 3.8495 20 6 0.7753 0.5552 4.9761 21 7 0.3574 0.9731 6.2452 22 6 -0.3714 -0.0986 6.9392 23 6 -0.7570 0.3792 8.3418 24 8 -1.5290 1.5784 8.2359 25 6 -0.8493 2.6434 7.5658 26 6 -0.4645 2.1887 6.1554 27 6 1.5651 -0.5792 4.8439 28 6 1.9767 -0.9919 3.5920 29 1 -0.3633 0.5895 0.8418 30 1 -0.3633 0.4342 -0.9314 31 1 -0.3633 -1.0237 0.0896 32 1 1.8934 -0.5139 -0.8900 33 1 3.1264 1.4437 0.0891 34 1 1.7514 1.9299 -0.9311 35 1 1.6058 1.9813 0.8420 36 1 3.5890 -1.8640 1.9411 37 1 3.5527 -1.6868 0.1704 38 1 1.8575 -3.3426 2.9423 39 1 0.9645 -6.6788 0.6251 40 1 0.5270 1.4273 1.7222 41 1 -0.2144 2.1573 3.9524 42 1 -1.2727 -0.3477 6.3790 43 1 0.2649 -0.9802 7.0171 44 1 0.1457 0.5773 8.9197 45 1 -1.3468 -0.3907 8.8392 46 1 0.0507 2.9074 8.1212 47 1 -1.5054 3.5116 7.5020 48 1 0.1037 2.9766 5.6612 49 1 -1.3673 1.9762 5.5826 50 1 1.8569 -1.1393 5.7201 51 1 2.5907 -1.8745 3.4891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929956957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:08 Heat of formation + Delta-G solvation = -30.543011 kcal Electronic energy + Delta-G solvation = -30271.358158 eV Core-core repulsion = 26364.838985 eV Total energy + Delta-G solvation = -3906.519173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38750 -39.21770 -37.26067 -35.58753 -34.77040 -32.32564 -31.97179 -31.58806 -30.10868 -29.50899 -27.75558 -26.95473 -26.02624 -24.61903 -24.30606 -22.05392 -21.76950 -20.92330 -20.61054 -19.29163 -17.70377 -17.06187 -16.31633 -16.05060 -15.77703 -15.36007 -15.08573 -14.80792 -14.68755 -14.61542 -14.56039 -14.30335 -13.78204 -13.50956 -13.33803 -12.95952 -12.76187 -12.74144 -12.53233 -12.31592 -12.20450 -11.81366 -11.74694 -11.57560 -11.51821 -11.24033 -11.03946 -10.99380 -10.95015 -10.80050 -10.69582 -10.39193 -10.22860 -10.06985 -9.93546 -9.64098 -9.12660 -8.61588 -8.56132 -8.49023 -8.02415 -6.39938 -6.02565 -4.24484 1.84863 2.00959 3.25286 3.31315 3.32167 3.59442 3.67304 3.80433 4.32139 4.36112 4.71551 4.84012 4.91672 4.98568 5.04831 5.15908 5.22205 5.23249 5.31470 5.37224 5.39911 5.44939 5.47394 5.60933 5.68781 5.71290 5.74007 5.76743 5.79633 5.87430 5.96830 6.00666 6.08650 6.09085 6.21563 6.34247 6.40747 6.47927 6.49760 6.58313 6.63180 6.67250 6.85860 6.92552 7.04014 7.22011 7.49782 7.65129 7.76708 7.88126 8.10748 8.20056 8.79262 9.37424 9.54386 10.98941 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003257 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.502880 B = 8595.218093 C =10169.109880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.150 3.850 3 C -0.176 4.176 4 N -0.612 5.612 5 C 0.093 3.907 6 C 0.218 3.782 7 H 0.053 0.947 8 O -0.554 6.554 9 C -0.578 4.578 10 H 0.055 0.945 11 C 0.082 3.918 12 N -0.856 5.856 13 Si 0.889 3.111 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.231 3.769 18 C -0.201 4.201 19 C -0.123 4.123 20 C 0.027 3.973 21 N -0.482 5.482 22 C 0.018 3.982 23 C 0.063 3.937 24 O -0.387 6.387 25 C 0.063 3.937 26 C 0.016 3.984 27 C -0.086 4.086 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.339 0.661 39 H 0.261 0.739 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.050 0.950 50 H 0.116 0.884 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 16.513 8.256 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 C -0.234 4.234 4 N -0.321 5.321 5 C -0.029 4.029 6 C 0.159 3.841 7 H 0.071 0.929 8 O -0.358 6.358 9 C -0.616 4.616 10 H 0.073 0.927 11 C -0.125 4.125 12 N -0.491 5.491 13 Si 0.716 3.284 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.127 3.873 18 C -0.223 4.223 19 C -0.144 4.144 20 C -0.071 4.071 21 N -0.200 5.200 22 C -0.108 4.108 23 C -0.014 4.014 24 O -0.306 6.306 25 C -0.014 4.014 26 C -0.112 4.112 27 C -0.106 4.106 28 C -0.183 4.183 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.184 0.816 39 H 0.071 0.929 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.107 0.893 49 H 0.068 0.932 50 H 0.134 0.866 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.723 16.454 7.998 18.496 hybrid contribution 0.805 -1.229 -0.506 1.554 sum -1.917 15.225 7.492 17.076 Atomic orbital electron populations 1.22475 0.95737 1.03620 1.01796 1.20811 0.94003 0.92240 0.88346 1.22491 1.01716 0.97139 1.02062 1.46871 1.49411 1.34036 1.01765 1.22548 0.91788 0.87509 1.01087 1.19740 0.89800 0.88331 0.86199 0.92909 1.86652 1.37590 1.95843 1.15703 1.21579 0.93130 0.92237 1.54693 0.92667 1.25019 0.94839 0.98885 0.93758 1.70074 1.11516 1.21181 1.46340 0.86747 0.81094 0.81817 0.78754 1.20102 1.21221 1.20197 1.17702 0.92548 0.91671 0.85362 1.21022 1.04961 0.98860 0.97486 1.20891 1.01030 1.00713 0.91728 1.18500 1.02950 0.98195 0.87406 1.59656 1.38060 1.04754 1.17496 1.22928 0.97912 0.94748 0.95232 1.22715 0.96066 0.87078 0.95527 1.87975 1.42281 1.22245 1.78080 1.22694 0.97403 0.89927 0.91367 1.22878 0.96636 0.93662 0.98019 1.20439 0.97726 0.95628 0.96846 1.20698 1.05385 1.01333 0.90886 0.91151 0.92566 0.91455 0.89893 0.92506 0.92320 0.91283 0.91828 0.91611 0.81571 0.92929 0.84669 0.86730 0.93263 0.89042 0.92261 0.88322 0.92320 0.88469 0.89262 0.93175 0.86555 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.91 37.16 0.33 -2.27 16 2 C 0.15 2.24 3.27 -67.93 -0.22 2.02 16 3 C -0.18 -2.15 9.07 37.15 0.34 -1.82 16 4 N -0.61 -10.58 2.48 -164.11 -0.41 -10.99 16 5 C 0.09 1.81 4.88 -4.04 -0.02 1.79 16 6 C 0.22 5.26 3.10 -27.88 -0.09 5.17 16 7 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 8 O -0.55 -13.82 11.22 -35.23 -0.40 -14.21 16 9 C -0.58 -15.23 8.76 -34.44 -0.30 -15.54 16 10 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 11 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 12 N -0.86 -24.89 12.83 55.43 0.71 -24.18 16 13 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C 0.23 3.94 5.87 -83.66 -0.49 3.45 16 18 C -0.20 -3.04 7.06 -39.40 -0.28 -3.32 16 19 C -0.12 -1.75 8.82 -39.40 -0.35 -2.09 16 20 C 0.03 0.39 5.64 -83.67 -0.47 -0.08 16 21 N -0.48 -6.11 4.78 -170.73 -0.82 -6.93 16 22 C 0.02 0.21 5.41 -3.71 -0.02 0.19 16 23 C 0.06 0.63 7.01 37.21 0.26 0.89 16 24 O -0.39 -4.43 10.83 -35.23 -0.38 -4.81 16 25 C 0.06 0.60 7.01 37.21 0.26 0.86 16 26 C 0.02 0.17 4.33 -3.71 -0.02 0.15 16 27 C -0.09 -1.32 9.20 -39.40 -0.36 -1.69 16 28 C -0.16 -2.73 7.74 -39.40 -0.31 -3.04 16 29 H 0.07 0.99 4.64 -51.93 -0.24 0.75 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.26 7.84 -51.93 -0.41 0.85 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.84 4.87 -51.93 -0.25 0.58 16 36 H 0.06 1.21 6.43 -51.93 -0.33 0.87 16 37 H 0.07 1.23 7.96 -51.93 -0.41 0.81 16 38 H 0.34 7.75 6.67 45.56 0.30 8.05 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.14 1.85 3.12 -52.49 -0.16 1.69 16 41 H 0.11 1.38 5.81 -52.49 -0.30 1.08 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.03 6.86 -51.93 -0.36 0.68 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.87 7.23 -51.93 -0.38 0.49 16 49 H 0.05 0.57 7.54 -51.93 -0.39 0.18 16 50 H 0.12 1.62 7.20 -52.48 -0.38 1.25 16 51 H 0.13 2.25 4.34 -52.49 -0.23 2.02 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -30.44 382.44 -9.68 -40.13 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.31 Total: 12.69 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.83 Total: -13.19 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.51 Total: -42.09 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.78 Total: -19.02 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.44 -9.68 -40.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929956957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.582 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds