Wall clock time and date at job start Sat Apr 11 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46954 * 2 1 4 4 H 1.09003 * 109.52699 * 54.91779 * 3 2 1 5 5 C 1.53196 * 109.48804 * 294.82538 * 3 2 1 6 6 N 1.46924 * 108.76800 * 185.40124 * 5 3 2 7 7 C 1.34782 * 120.63354 * 233.64424 * 6 5 3 8 8 O 1.21274 * 119.99786 * 359.97312 * 7 6 5 9 9 C 1.50699 * 119.99966 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46846 * 179.97438 * 9 7 6 11 11 C 1.50708 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.34510 * 125.78782 * 90.00462 * 11 10 9 13 13 C 1.41379 * 106.84233 * 179.97438 * 12 11 10 14 14 C 1.34519 * 106.83859 * 359.97438 * 13 12 11 15 15 C 1.50698 * 125.78759 * 180.02562 * 14 13 12 16 16 O 1.34298 * 108.41921 * 359.74054 * 14 13 12 17 17 C 1.46932 * 118.73828 * 53.61710 * 6 5 3 18 18 C 1.53196 * 108.77384 * 306.39467 * 17 6 5 19 19 C 1.53036 * 109.31536 * 54.63418 * 18 17 6 20 20 H 1.09007 * 109.46211 * 58.63452 * 19 18 17 21 21 N 1.46496 * 109.46261 * 178.61527 * 19 18 17 22 22 C 1.36945 * 119.99718 * 275.02605 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 H 1.08998 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47530 * 300.00267 * 1 2 3 32 32 H 1.09006 * 109.46977 * 59.99903 * 1 2 3 33 33 H 1.08997 * 109.47162 * 239.99729 * 2 1 3 34 34 H 1.08996 * 109.46536 * 119.99902 * 2 1 3 35 35 H 1.09005 * 109.57902 * 65.62432 * 5 3 2 36 36 H 1.08993 * 109.72026 * 305.26324 * 5 3 2 37 37 H 1.08998 * 109.47021 * 300.00015 * 9 7 6 38 38 H 1.09004 * 109.47210 * 59.99727 * 9 7 6 39 39 H 1.08990 * 109.47563 * 300.00378 * 10 9 7 40 40 H 1.09004 * 109.47145 * 60.00676 * 10 9 7 41 41 H 1.08002 * 126.58053 * 359.96455 * 12 11 10 42 42 H 1.07997 * 126.58248 * 180.02562 * 13 12 11 43 43 H 1.09001 * 109.47489 * 90.00038 * 15 14 13 44 44 H 1.09000 * 109.47249 * 210.00282 * 15 14 13 45 45 H 1.08997 * 109.47142 * 329.99754 * 15 14 13 46 46 H 1.08990 * 109.58621 * 186.60591 * 17 6 5 47 47 H 1.09001 * 109.58233 * 66.18039 * 17 6 5 48 48 H 1.08996 * 109.49437 * 294.68012 * 18 17 6 49 49 H 1.09000 * 109.52019 * 174.60075 * 18 17 6 50 50 H 0.96996 * 120.00499 * 95.02336 * 21 19 18 51 51 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6386 2.1264 -1.3107 6 7 2.2449 3.4641 -1.3508 7 6 1.4852 4.5562 -1.5674 8 8 0.2893 4.4401 -1.7320 9 6 2.1219 5.9216 -1.6051 10 6 1.0468 6.9786 -1.8653 11 6 1.6835 8.3441 -1.9024 12 6 2.1744 8.9536 -2.9964 13 6 2.6720 10.2089 -2.5773 14 6 2.4549 10.2915 -1.2523 15 6 2.8215 11.4570 -0.3702 16 8 1.8505 9.1617 -0.8501 17 6 3.6950 3.5889 -1.1497 18 6 4.0733 2.8882 0.1590 19 6 3.5652 1.4450 0.1258 20 1 4.0008 0.9262 -0.7282 21 7 3.9541 0.7621 1.3621 22 6 5.1920 0.1858 1.4657 23 1 5.8814 0.2345 0.6359 24 6 5.5607 -0.4609 2.6373 25 7 4.7202 -0.5207 3.6485 26 14 7.2491 -1.2475 2.7784 27 1 7.3955 -1.8682 4.1195 28 1 7.3987 -2.2896 1.7311 29 1 8.2955 -0.2096 2.5970 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 0.5533 2.2155 -1.3589 36 1 1.9948 1.5384 -2.1565 37 1 2.6064 6.1230 -0.6497 38 1 2.8641 5.9545 -2.4029 39 1 0.5627 6.7769 -2.8208 40 1 0.3045 6.9458 -1.0678 41 1 2.1863 8.5597 -4.0019 42 1 3.1365 10.9580 -3.2013 43 1 1.9903 12.1613 -0.3346 44 1 3.0366 11.0976 0.6361 45 1 3.7028 11.9553 -0.7741 46 1 3.9665 4.6428 -1.0917 47 1 4.2209 3.1191 -1.9810 48 1 3.6187 3.4147 0.9981 49 1 5.1574 2.8897 0.2728 50 1 3.3347 0.7180 2.1073 51 1 4.9777 -0.9729 4.4671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037981086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:30 Heat of formation + Delta-G solvation = -30.863501 kcal Electronic energy + Delta-G solvation = -29011.094884 eV Core-core repulsion = 25104.561814 eV Total energy + Delta-G solvation = -3906.533070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.79130 -40.19794 -37.91503 -34.74898 -34.41121 -33.73662 -33.36699 -31.73649 -31.34296 -29.51539 -28.92633 -27.10226 -25.07399 -23.98122 -23.43516 -22.59345 -21.91461 -20.83052 -20.32452 -19.78651 -18.84533 -17.45961 -17.08905 -16.43990 -16.29572 -15.79735 -15.75944 -14.98039 -14.54591 -14.13050 -14.02630 -13.98843 -13.69473 -13.46316 -13.34562 -13.30733 -13.13673 -13.01771 -13.00094 -12.57361 -12.54397 -12.35843 -12.14990 -11.96066 -11.71551 -11.61128 -11.32985 -11.24532 -10.93543 -10.86856 -10.70311 -10.35785 -10.24664 -10.16529 -10.08182 -9.80372 -9.67327 -9.60506 -8.91376 -8.47993 -8.46571 -6.98456 -5.79318 -3.08192 1.48400 2.38355 2.65651 2.66246 3.12752 3.41084 3.45983 3.46948 4.28830 4.55541 4.58071 4.71074 4.77962 4.84104 4.85333 5.03942 5.08459 5.12124 5.22134 5.25821 5.30785 5.35252 5.38763 5.46252 5.50078 5.57037 5.59863 5.63481 5.68373 5.68937 5.75858 5.83301 5.89150 5.99445 6.01927 6.12245 6.15159 6.31312 6.33815 6.35134 6.39361 6.45360 6.55951 6.67333 6.81969 6.95131 6.98874 7.04575 7.50390 7.66128 8.21197 8.38906 9.50252 10.07681 10.42512 11.43004 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.002504 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.967773 B =11178.157243 C =12720.862660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.605 5.605 7 C 0.516 3.484 8 O -0.551 6.551 9 C -0.137 4.137 10 C -0.023 4.023 11 C -0.008 4.008 12 C -0.208 4.208 13 C -0.213 4.213 14 C -0.018 4.018 15 C -0.074 4.074 16 O -0.173 6.173 17 C 0.105 3.895 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.384 0.616 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 18.615 -12.879 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.338 5.338 7 C 0.304 3.696 8 O -0.429 6.429 9 C -0.177 4.177 10 C -0.061 4.061 11 C -0.058 4.058 12 C -0.227 4.227 13 C -0.232 4.232 14 C -0.069 4.069 15 C -0.130 4.130 16 O -0.070 6.070 17 C -0.018 4.018 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.218 0.782 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.980 18.386 -12.667 23.114 hybrid contribution 1.086 -0.373 0.239 1.173 sum -4.893 18.012 -12.428 22.424 Atomic orbital electron populations 1.21844 0.96808 1.01028 1.01304 1.21449 0.94378 0.95710 1.03455 1.21780 0.97630 0.96272 0.96736 0.91227 1.21751 0.99448 0.81459 0.97740 1.48183 1.08618 1.06811 1.70150 1.20473 0.86864 0.86051 0.76222 1.90674 1.14873 1.86715 1.50654 1.21691 0.99412 0.91688 1.04893 1.19852 0.96526 0.84299 1.05383 1.22432 1.04154 0.94158 0.85078 1.21579 1.05537 0.95985 0.99602 1.21556 1.07722 0.99398 0.94502 1.22449 1.00958 0.88621 0.94823 1.20299 1.02225 0.91928 0.98571 1.83978 1.61583 1.24625 1.36814 1.21899 0.79379 1.01225 0.99279 1.22691 1.02239 0.99331 0.95100 1.20183 0.90806 0.90503 0.91196 0.93445 1.42404 1.16455 1.64461 1.12713 1.19161 0.91807 1.27478 0.98554 0.91312 1.24727 0.98121 1.01532 0.96440 1.69650 1.35266 1.48338 1.04751 0.86304 0.84151 0.79187 0.76740 1.21757 1.21309 1.21340 0.93177 0.93001 0.93219 0.92474 0.89796 0.89152 0.91724 0.88397 0.88482 0.88041 0.89255 0.83481 0.83628 0.90208 0.90484 0.89408 0.90441 0.91390 0.92182 0.90548 0.78195 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.10 -1.69 1.92 -90.50 -0.17 -1.86 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.70 5.33 -3.71 -0.02 1.68 16 6 N -0.61 -8.21 2.97 -172.76 -0.51 -8.72 16 7 C 0.52 7.00 7.70 -10.98 -0.08 6.92 16 8 O -0.55 -9.09 15.39 5.56 0.09 -9.00 16 9 C -0.14 -1.42 4.03 -27.88 -0.11 -1.53 16 10 C -0.02 -0.24 5.04 -27.88 -0.14 -0.38 16 11 C -0.01 -0.09 6.58 -35.62 -0.23 -0.32 16 12 C -0.21 -2.07 10.81 -39.71 -0.43 -2.50 16 13 C -0.21 -2.00 10.81 -39.70 -0.43 -2.43 16 14 C -0.02 -0.18 7.32 -35.62 -0.26 -0.44 16 15 C -0.07 -0.45 10.42 36.00 0.38 -0.07 16 16 O -0.17 -2.05 10.65 5.73 0.06 -1.99 16 17 C 0.11 1.31 6.34 -3.70 -0.02 1.29 16 18 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 19 C 0.18 3.38 2.19 -67.89 -0.15 3.23 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.72 -16.97 4.33 -53.38 -0.23 -17.20 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 26 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.62 7.22 -51.93 -0.37 1.24 16 35 H 0.09 1.36 5.73 -51.93 -0.30 1.06 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.00 7.69 -51.93 -0.40 0.60 16 38 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 39 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.79 5.93 -51.93 -0.31 0.49 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 50 H 0.38 9.83 7.51 -40.82 -0.31 9.53 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 406.64 15.07 6.13 6.13 Total: -1.00 -31.44 406.64 -9.38 -40.82 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.75 Total: 9.48 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.86 Total: -9.62 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.02 Total: -52.65 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.15 Total: -11.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.44 -9.38 -40.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037981086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.959 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds