Wall clock time and date at job start Sat Apr 11 2020 04:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 H 1.09002 * 109.49918 * 305.00302 * 3 2 1 5 5 C 1.53196 * 109.49572 * 65.06819 * 3 2 1 6 6 N 1.46919 * 108.77552 * 174.61517 * 5 3 2 7 7 C 1.34785 * 120.62742 * 126.36835 * 6 5 3 8 8 O 1.21284 * 119.99984 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.99838 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.47349 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47515 * 180.02562 * 10 9 7 12 12 C 1.34508 * 125.78895 * 90.00003 * 11 10 9 13 13 C 1.41391 * 106.84085 * 180.02562 * 12 11 10 14 14 C 1.34518 * 106.83640 * 0.02562 * 13 12 11 15 15 C 1.50702 * 125.78637 * 180.02562 * 14 13 12 16 16 O 1.34298 * 108.42201 * 359.73527 * 14 13 12 17 17 C 1.46927 * 118.74315 * 306.39314 * 6 5 3 18 18 C 1.53185 * 108.77460 * 53.60638 * 17 6 5 19 19 C 1.53039 * 109.49913 * 184.93649 * 3 2 1 20 20 H 1.08997 * 109.45914 * 58.63125 * 19 3 2 21 21 N 1.46503 * 109.45768 * 298.67620 * 19 3 2 22 22 C 1.36936 * 119.99646 * 155.00132 * 21 19 3 23 23 H 1.08002 * 120.00532 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99829 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00168 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00048 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46939 * 60.00105 * 26 24 22 28 28 H 1.48499 * 109.47146 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47329 * 299.99953 * 26 24 22 30 30 H 1.08996 * 109.47558 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47052 * 299.99929 * 1 2 3 32 32 H 1.09007 * 109.47385 * 59.99555 * 1 2 3 33 33 H 1.09007 * 109.47051 * 240.00557 * 2 1 3 34 34 H 1.08997 * 109.47069 * 120.00885 * 2 1 3 35 35 H 1.09001 * 109.58261 * 294.40557 * 5 3 2 36 36 H 1.08996 * 109.58319 * 54.82878 * 5 3 2 37 37 H 1.08998 * 109.47354 * 300.00452 * 9 7 6 38 38 H 1.09008 * 109.47300 * 60.00401 * 9 7 6 39 39 H 1.09004 * 109.46993 * 300.00870 * 10 9 7 40 40 H 1.09008 * 109.46612 * 59.99955 * 10 9 7 41 41 H 1.08002 * 126.58171 * 0.03867 * 12 11 10 42 42 H 1.07996 * 126.58293 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46900 * 89.99930 * 15 14 13 44 44 H 1.08998 * 109.46896 * 209.99407 * 15 14 13 45 45 H 1.09000 * 109.47395 * 330.00088 * 15 14 13 46 46 H 1.08996 * 109.58575 * 173.39828 * 17 6 5 47 47 H 1.09001 * 109.58009 * 293.67893 * 17 6 5 48 48 H 1.09008 * 109.49890 * 65.31972 * 18 17 6 49 49 H 1.09000 * 109.49966 * 185.41341 * 18 17 6 50 50 H 0.97000 * 120.00335 * 334.99406 * 21 19 3 51 51 H 0.96998 * 120.00056 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 -0.8416 5 6 1.6365 2.1274 1.3096 6 7 2.2425 3.4652 1.3497 7 6 1.4822 4.5573 1.5645 8 8 0.2860 4.4409 1.7274 9 6 2.1186 5.9227 1.6035 10 6 1.0429 6.9797 1.8613 11 6 1.6792 8.3452 1.8996 12 6 1.8550 9.1610 0.8447 13 6 2.4860 10.3291 1.3309 14 6 2.6585 10.1569 2.6538 15 6 3.2936 11.1469 3.5960 16 8 2.1630 8.9558 2.9936 17 6 3.6928 3.5902 1.1507 18 6 4.0733 2.8889 -0.1570 19 6 3.5654 1.4449 -0.1241 20 1 3.8557 0.9360 -1.0432 21 7 4.1496 0.7484 1.0247 22 6 5.3876 0.1727 0.9190 23 1 5.9331 0.2317 -0.0112 24 6 5.9415 -0.4869 2.0077 25 7 5.2770 -0.5585 3.1416 26 14 7.6299 -1.2729 1.8635 27 1 8.6335 -0.2315 1.5263 28 1 7.9920 -1.9087 3.1557 29 1 7.6068 -2.3028 0.7939 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 0.5512 2.2163 1.3560 36 1 1.9936 1.5390 2.1547 37 1 2.8590 5.9558 2.4027 38 1 2.6051 6.1242 0.6490 39 1 0.3021 6.9466 1.0623 40 1 0.5568 6.7780 2.8159 41 1 1.5688 8.9620 -0.1775 42 1 2.7748 11.1934 0.7513 43 1 2.5268 11.8091 3.9982 44 1 3.7769 10.6119 4.4135 45 1 4.0363 11.7358 3.0578 46 1 3.9641 4.6443 1.0924 47 1 4.2175 3.1234 1.9842 48 1 3.6197 3.4149 -0.9973 49 1 5.1575 2.8907 -0.2687 50 1 3.6597 0.6951 1.8601 51 1 5.6639 -1.0197 3.9022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037981087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:33 Heat of formation + Delta-G solvation = -28.920889 kcal Electronic energy + Delta-G solvation = -29402.906874 eV Core-core repulsion = 25496.458041 eV Total energy + Delta-G solvation = -3906.448832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.73419 -40.09626 -37.93127 -34.46424 -34.26520 -33.71477 -33.31468 -31.69926 -31.27125 -29.44442 -28.69424 -27.09319 -25.00245 -23.89825 -23.51569 -23.10672 -21.86482 -20.79653 -20.26461 -19.43460 -18.18706 -17.44735 -17.15561 -16.36598 -16.20158 -15.69472 -15.60640 -14.73657 -14.55933 -14.30526 -14.00687 -13.93252 -13.66708 -13.44380 -13.27949 -13.26682 -13.12962 -12.95714 -12.73393 -12.66477 -12.42652 -12.24507 -12.21408 -11.92493 -11.64568 -11.40571 -11.17350 -11.08746 -10.96379 -10.81348 -10.71231 -10.30569 -10.27182 -10.20205 -10.02286 -9.79205 -9.57083 -9.54179 -8.93152 -8.40923 -8.21949 -6.99163 -5.80388 -3.08873 1.54096 2.44197 2.71933 2.82511 3.31395 3.40625 3.45960 3.46695 4.38447 4.56041 4.65649 4.80693 4.88316 4.91176 4.92999 5.12498 5.15306 5.16739 5.28197 5.34360 5.37113 5.42908 5.53248 5.56268 5.58456 5.58602 5.68942 5.70252 5.80497 5.83074 5.84633 5.89964 5.92056 6.05783 6.09980 6.15555 6.19901 6.35493 6.38678 6.39611 6.41274 6.56648 6.63265 6.70724 6.76843 6.93976 7.01168 7.04432 7.66542 7.72217 8.38097 8.38249 9.49692 10.06453 10.41535 11.41908 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.002776 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.992714 B =10085.447536 C =11678.458142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.600 5.600 7 C 0.514 3.486 8 O -0.556 6.556 9 C -0.136 4.136 10 C -0.023 4.023 11 C -0.007 4.007 12 C -0.209 4.209 13 C -0.212 4.212 14 C -0.020 4.020 15 C -0.073 4.073 16 O -0.173 6.173 17 C 0.112 3.888 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 18.511 -4.247 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.332 5.332 7 C 0.302 3.698 8 O -0.435 6.435 9 C -0.176 4.176 10 C -0.060 4.060 11 C -0.057 4.057 12 C -0.228 4.228 13 C -0.231 4.231 14 C -0.070 4.070 15 C -0.130 4.130 16 O -0.070 6.070 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.197 18.231 -3.894 19.983 hybrid contribution 1.097 -0.372 -0.053 1.159 sum -6.100 17.859 -3.946 19.280 Atomic orbital electron populations 1.21852 0.96821 1.01023 1.01346 1.21418 0.94269 0.95770 1.03353 1.21745 0.97347 0.96127 0.97054 0.91630 1.21687 0.98776 0.81672 0.98261 1.48140 1.08736 1.06596 1.69681 1.20435 0.86851 0.86069 0.76460 1.90662 1.14945 1.86798 1.51101 1.21676 0.99388 0.91801 1.04738 1.19858 0.96285 0.84625 1.05264 1.22459 1.02321 0.96638 0.84242 1.21583 1.06367 0.94940 0.99873 1.21555 1.06677 1.00716 0.94177 1.22435 1.02685 0.86442 0.95452 1.20290 1.00049 0.94987 0.97631 1.83975 1.60023 1.27175 1.35864 1.21754 0.79122 1.00091 1.00057 1.22533 1.01800 0.99316 0.95440 1.20236 0.89766 0.90621 0.92606 0.93144 1.42468 1.19026 1.64011 1.10561 1.19167 0.93609 1.27129 0.97014 0.91336 1.24701 0.98531 1.01476 0.96023 1.69635 1.38175 1.48031 1.02217 0.86319 0.84373 0.79198 0.76561 1.21376 1.21819 1.21378 0.93176 0.92775 0.93403 0.92057 0.90498 0.89585 0.90791 0.88570 0.88515 0.88070 0.89295 0.83477 0.83652 0.90253 0.90525 0.89439 0.91190 0.89661 0.93322 0.90749 0.78091 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.65 2.13 -90.50 -0.19 -1.84 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 1.98 5.03 -3.71 -0.02 1.96 16 6 N -0.60 -9.46 2.97 -172.78 -0.51 -9.97 16 7 C 0.51 7.83 7.70 -10.98 -0.08 7.75 16 8 O -0.56 -9.96 15.40 5.55 0.09 -9.87 16 9 C -0.14 -1.60 4.03 -27.88 -0.11 -1.72 16 10 C -0.02 -0.26 5.04 -27.88 -0.14 -0.40 16 11 C -0.01 -0.08 6.57 -35.63 -0.23 -0.31 16 12 C -0.21 -2.24 10.81 -39.70 -0.43 -2.67 16 13 C -0.21 -2.13 10.81 -39.70 -0.43 -2.56 16 14 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 15 C -0.07 -0.47 10.42 36.01 0.38 -0.10 16 16 O -0.17 -2.17 10.65 5.72 0.06 -2.11 16 17 C 0.11 1.73 6.08 -3.71 -0.02 1.71 16 18 C -0.15 -2.39 5.78 -26.58 -0.15 -2.55 16 19 C 0.18 3.24 2.53 -67.85 -0.17 3.07 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -16.21 3.73 -53.35 -0.20 -16.41 16 22 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.88 13.06 55.49 0.72 -26.15 16 26 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 35 H 0.09 1.45 5.72 -51.93 -0.30 1.15 16 36 H 0.07 1.39 6.64 -51.93 -0.34 1.04 16 37 H 0.10 1.10 7.94 -51.93 -0.41 0.69 16 38 H 0.10 1.00 7.69 -51.92 -0.40 0.60 16 39 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.09 1.08 8.10 -51.92 -0.42 0.66 16 41 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.88 5.93 -51.93 -0.31 0.58 16 47 H 0.09 1.57 7.75 -51.93 -0.40 1.17 16 48 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.38 9.34 5.94 -40.82 -0.24 9.10 16 51 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -30.37 403.05 -9.30 -39.68 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.61 Total: 10.58 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.90 Total: -8.42 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.01 Total: -52.53 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.15 Total: -11.98 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.37 -9.30 -39.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037981087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.756 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds