Wall clock time and date at job start Sat Apr 11 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47336 * 2 1 4 4 H 1.09003 * 109.51797 * 305.08359 * 3 2 1 5 5 C 1.53196 * 109.49836 * 65.15938 * 3 2 1 6 6 N 1.46918 * 108.77417 * 174.58985 * 5 3 2 7 7 C 1.34785 * 120.63350 * 126.37351 * 6 5 3 8 8 O 1.21279 * 119.99468 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00391 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47301 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.34515 * 125.78919 * 89.72127 * 11 10 9 13 13 C 1.41380 * 106.84175 * 179.88803 * 12 11 10 14 14 C 1.34507 * 106.84151 * 0.36935 * 13 12 11 15 15 C 1.50700 * 125.79041 * 179.74971 * 14 13 12 16 16 O 1.34299 * 108.42057 * 359.77538 * 14 13 12 17 17 C 1.46930 * 118.74024 * 306.39214 * 6 5 3 18 18 C 1.53188 * 108.77276 * 53.60944 * 17 6 5 19 19 C 1.53033 * 109.31371 * 305.36363 * 18 17 6 20 20 H 1.08999 * 109.45340 * 301.35215 * 19 18 17 21 21 N 1.46500 * 109.46114 * 181.38608 * 19 18 17 22 22 C 1.36943 * 119.99878 * 84.93157 * 21 19 18 23 23 H 1.07996 * 119.99698 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00319 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00011 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 59.99967 * 26 24 22 28 28 H 1.48503 * 109.47261 * 300.00148 * 26 24 22 29 29 H 1.48500 * 109.47454 * 180.02562 * 26 24 22 30 30 H 1.09006 * 109.47361 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47283 * 299.99792 * 1 2 3 32 32 H 1.08998 * 109.47490 * 60.00043 * 1 2 3 33 33 H 1.08992 * 109.47198 * 239.99754 * 2 1 3 34 34 H 1.09007 * 109.47012 * 119.99688 * 2 1 3 35 35 H 1.08995 * 109.58629 * 294.38032 * 5 3 2 36 36 H 1.09002 * 109.58351 * 54.65565 * 5 3 2 37 37 H 1.08998 * 109.47208 * 300.00258 * 9 7 6 38 38 H 1.09006 * 109.46933 * 59.99564 * 9 7 6 39 39 H 1.08998 * 109.47064 * 300.00322 * 10 9 7 40 40 H 1.08998 * 109.46687 * 60.00593 * 10 9 7 41 41 H 1.07999 * 126.57693 * 0.02562 * 12 11 10 42 42 H 1.08005 * 126.57921 * 180.12154 * 13 12 11 43 43 H 1.08999 * 109.47400 * 180.02562 * 15 14 13 44 44 H 1.09007 * 109.46930 * 300.00245 * 15 14 13 45 45 H 1.08993 * 109.47437 * 60.00141 * 15 14 13 46 46 H 1.09004 * 109.58466 * 173.40097 * 17 6 5 47 47 H 1.09001 * 109.58286 * 293.67950 * 17 6 5 48 48 H 1.09000 * 109.49274 * 185.41340 * 18 17 6 49 49 H 1.08993 * 109.49619 * 65.32229 * 18 17 6 50 50 H 0.97000 * 120.00415 * 264.93105 * 21 19 18 51 51 H 0.97001 * 119.99542 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4856 4.5566 1.5672 8 8 0.2895 4.4407 1.7308 9 6 2.1227 5.9217 1.6061 10 6 1.0476 6.9791 1.8648 11 6 1.6848 8.3441 1.9043 12 6 1.8659 9.1586 0.8492 13 6 2.4927 10.3281 1.3373 14 6 2.6646 10.1550 2.6600 15 6 3.3009 11.1435 3.6029 16 8 2.1734 8.9516 2.9979 17 6 3.6952 3.5888 1.1497 18 6 4.0736 2.8881 -0.1589 19 6 3.5652 1.4451 -0.1257 20 1 4.0008 0.9263 0.7282 21 7 3.9541 0.7620 -1.3620 22 6 5.1923 0.1863 -1.4658 23 1 5.8818 0.2354 -0.6361 24 6 5.5606 -0.4614 -2.6370 25 7 4.7199 -0.5217 -3.6480 26 14 7.2492 -1.2473 -2.7783 27 1 7.4001 -2.2884 -1.7301 28 1 8.2953 -0.2087 -2.5986 29 1 7.3952 -1.8693 -4.1189 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5533 2.2161 1.3585 36 1 1.9942 1.5364 2.1549 37 1 2.8641 5.9540 2.4044 38 1 2.6080 6.1235 0.6511 39 1 0.3064 6.9466 1.0662 40 1 0.5620 6.7774 2.8196 41 1 1.5842 8.9585 -0.1741 42 1 2.7820 11.1927 0.7583 43 1 3.3038 10.7327 4.6125 44 1 4.3259 11.3385 3.2874 45 1 2.7338 12.0742 3.5907 46 1 3.9670 4.6428 1.0918 47 1 4.2208 3.1212 1.9823 48 1 5.1577 2.8894 -0.2719 49 1 3.6192 3.4148 -0.9981 50 1 3.3346 0.7175 -2.1071 51 1 3.8429 -0.1139 -3.5744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037981088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:35 Heat of formation + Delta-G solvation = -30.537239 kcal Electronic energy + Delta-G solvation = -29039.351484 eV Core-core repulsion = 25132.832561 eV Total energy + Delta-G solvation = -3906.518923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.81402 -40.26027 -38.00551 -34.90189 -34.47285 -33.91673 -33.38691 -31.85127 -31.37794 -29.46685 -28.85990 -27.09835 -24.97372 -23.92980 -23.49018 -22.69306 -21.93692 -20.96520 -20.34495 -19.87777 -18.89333 -17.49265 -17.31150 -16.48136 -16.35480 -15.89585 -15.77628 -15.03642 -14.50979 -14.45449 -14.16212 -13.83511 -13.64142 -13.55435 -13.47804 -13.37425 -13.28818 -13.09484 -13.02342 -12.82360 -12.54903 -12.37234 -12.15338 -12.03701 -11.80769 -11.69821 -11.39894 -11.29726 -10.94440 -10.76446 -10.61972 -10.34091 -10.26936 -10.09567 -10.01945 -9.87851 -9.76377 -9.19122 -8.92871 -8.53582 -8.48652 -7.06334 -6.12381 -3.12692 1.45683 2.36920 2.60109 2.63799 3.07104 3.49146 3.52129 3.69859 4.25279 4.54865 4.63459 4.67162 4.75434 4.80278 4.83692 4.96941 5.05769 5.08231 5.12924 5.17108 5.24323 5.27863 5.34717 5.40041 5.48110 5.50516 5.56946 5.60462 5.62898 5.63594 5.72642 5.80894 5.82248 5.93186 5.97616 6.04031 6.06161 6.16388 6.26021 6.30395 6.32261 6.35724 6.47046 6.57444 6.72682 6.83357 6.95503 6.96131 7.44514 7.77387 8.15888 8.72830 9.19418 10.05910 10.21274 11.35627 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.002448 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.284803 B =11433.310563 C =12897.097458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.606 5.606 7 C 0.516 3.484 8 O -0.550 6.550 9 C -0.137 4.137 10 C -0.022 4.022 11 C -0.010 4.010 12 C -0.206 4.206 13 C -0.211 4.211 14 C -0.020 4.020 15 C -0.073 4.073 16 O -0.174 6.174 17 C 0.106 3.894 18 C -0.151 4.151 19 C 0.189 3.811 20 H 0.049 0.951 21 N -0.732 5.732 22 C -0.329 4.329 23 H 0.063 0.937 24 C -0.045 4.045 25 N -0.943 5.943 26 Si 1.078 2.922 27 H -0.296 1.296 28 H -0.296 1.296 29 H -0.285 1.285 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.367 0.633 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 18.703 13.864 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.086 0.914 5 C -0.004 4.004 6 N -0.338 5.338 7 C 0.304 3.696 8 O -0.428 6.428 9 C -0.177 4.177 10 C -0.060 4.060 11 C -0.060 4.060 12 C -0.225 4.225 13 C -0.231 4.231 14 C -0.070 4.070 15 C -0.130 4.130 16 O -0.071 6.071 17 C -0.017 4.017 18 C -0.192 4.192 19 C 0.078 3.922 20 H 0.067 0.933 21 N -0.373 5.373 22 C -0.460 4.460 23 H 0.081 0.919 24 C -0.242 4.242 25 N -0.588 5.588 26 Si 0.909 3.091 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.211 1.211 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.200 0.800 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.587 17.626 13.393 22.607 hybrid contribution -0.922 1.023 0.475 1.457 sum -5.509 18.649 13.868 23.884 Atomic orbital electron populations 1.21845 0.96641 1.01138 1.01383 1.21436 0.94502 0.95667 1.03305 1.21801 0.97623 0.96254 0.96886 0.91353 1.21726 0.99485 0.81521 0.97620 1.48175 1.08608 1.06785 1.70234 1.20486 0.86872 0.86055 0.76174 1.90677 1.14861 1.86715 1.50589 1.21694 0.99461 0.91667 1.04870 1.19843 0.96235 0.84640 1.05265 1.22411 1.02558 0.96747 0.84295 1.21617 1.06027 0.94912 0.99910 1.21557 1.06591 1.00741 0.94163 1.22431 1.02792 0.86301 0.95493 1.20293 1.00152 0.95000 0.97512 1.83966 1.60038 1.27158 1.35969 1.21891 0.79386 1.01283 0.99188 1.22658 1.02294 0.99172 0.95104 1.20116 0.90680 0.90485 0.90871 0.93330 1.42419 1.16474 1.65693 1.12735 1.19999 0.92418 1.32049 1.01577 0.91851 1.25726 1.05815 1.00253 0.92431 1.70886 1.08289 1.47557 1.32092 0.83267 0.74201 0.75859 0.75779 1.22307 1.22340 1.21092 0.93074 0.93077 0.93013 0.90262 0.92336 0.89077 0.91681 0.88590 0.88277 0.87976 0.89327 0.83400 0.83572 0.90645 0.89709 0.89786 0.90360 0.91366 0.90499 0.92317 0.79975 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.78 5.31 -26.73 -0.14 -1.92 16 3 C -0.11 -1.70 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.12 1.71 5.33 -3.71 -0.02 1.69 16 6 N -0.61 -8.23 2.97 -172.77 -0.51 -8.75 16 7 C 0.52 7.00 7.70 -10.99 -0.08 6.92 16 8 O -0.55 -9.05 15.39 5.56 0.09 -8.97 16 9 C -0.14 -1.42 4.03 -27.89 -0.11 -1.53 16 10 C -0.02 -0.23 5.04 -27.88 -0.14 -0.37 16 11 C -0.01 -0.11 6.58 -35.63 -0.23 -0.34 16 12 C -0.21 -2.12 10.81 -39.70 -0.43 -2.55 16 13 C -0.21 -2.03 10.81 -39.71 -0.43 -2.46 16 14 C -0.02 -0.19 7.32 -35.63 -0.26 -0.45 16 15 C -0.07 -0.41 10.42 36.01 0.38 -0.04 16 16 O -0.17 -1.99 10.65 5.72 0.06 -1.93 16 17 C 0.11 1.33 6.34 -3.71 -0.02 1.31 16 18 C -0.15 -2.46 5.66 -26.62 -0.15 -2.62 16 19 C 0.19 3.51 2.19 -67.89 -0.15 3.36 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.73 -17.25 4.33 -53.39 -0.23 -17.48 16 22 C -0.33 -8.83 9.93 -15.06 -0.15 -8.98 16 23 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 24 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 25 N -0.94 -28.53 13.70 55.49 0.76 -27.77 16 26 Si 1.08 25.38 29.92 -169.99 -5.09 20.29 16 27 H -0.30 -6.67 7.11 56.52 0.40 -6.26 16 28 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.51 7.22 -51.93 -0.37 1.14 16 34 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.09 1.36 5.73 -51.93 -0.30 1.07 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.89 7.94 -51.93 -0.41 0.47 16 38 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 39 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 41 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.37 9.12 6.34 -40.82 -0.26 8.86 16 51 H 0.25 7.60 6.77 -40.82 -0.28 7.33 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -32.44 404.94 -9.32 -41.77 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.64 Total: 9.68 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -1.86 Total: -12.95 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.02 Total: -54.00 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.15 Total: -10.90 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.29 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.44 -9.32 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037981088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.228 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds