Wall clock time and date at job start Sat Apr 11 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.09002 * 109.49678 * 55.00837 * 3 2 1 5 5 C 1.53186 * 109.50285 * 294.93678 * 3 2 1 6 6 N 1.46929 * 108.77685 * 185.41838 * 5 3 2 7 7 C 1.34778 * 120.62853 * 233.62926 * 6 5 3 8 8 O 1.21287 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.47448 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47271 * 180.02562 * 10 9 7 12 12 C 1.34512 * 125.78728 * 89.71955 * 11 10 9 13 13 C 1.41379 * 106.84053 * 179.88733 * 12 11 10 14 14 C 1.34514 * 106.83825 * 0.37656 * 13 12 11 15 15 C 1.50700 * 125.78993 * 179.79428 * 14 13 12 16 16 O 1.34301 * 125.78778 * 270.02838 * 11 10 9 17 17 C 1.46920 * 118.74048 * 53.60566 * 6 5 3 18 18 C 1.53186 * 108.77907 * 306.39358 * 17 6 5 19 19 C 1.53041 * 109.49368 * 175.06300 * 3 2 1 20 20 H 1.09000 * 109.46547 * 301.33712 * 19 3 2 21 21 N 1.46500 * 109.46085 * 61.30208 * 19 3 2 22 22 C 1.36936 * 120.00101 * 205.00127 * 21 19 3 23 23 H 1.07999 * 120.00267 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99733 * 179.97438 * 22 21 19 25 25 N 1.31608 * 120.00373 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99663 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47376 * 59.99682 * 26 24 22 28 28 H 1.48501 * 109.47255 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47213 * 299.99489 * 26 24 22 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 35 35 H 1.09004 * 109.58545 * 305.20417 * 5 3 2 36 36 H 1.08996 * 109.58578 * 65.48291 * 5 3 2 37 37 H 1.08998 * 109.47313 * 300.00215 * 9 7 6 38 38 H 1.09004 * 109.47082 * 60.00159 * 9 7 6 39 39 H 1.08998 * 109.47151 * 300.00451 * 10 9 7 40 40 H 1.09004 * 109.46737 * 60.00085 * 10 9 7 41 41 H 1.08007 * 126.57857 * 0.02562 * 12 11 10 42 42 H 1.07998 * 126.58244 * 180.11624 * 13 12 11 43 43 H 1.09002 * 109.47498 * 179.97438 * 15 14 13 44 44 H 1.08997 * 109.47203 * 299.99753 * 15 14 13 45 45 H 1.09004 * 109.47067 * 59.99607 * 15 14 13 46 46 H 1.09003 * 109.58422 * 66.18035 * 17 6 5 47 47 H 1.09004 * 109.58609 * 186.60456 * 17 6 5 48 48 H 1.09001 * 109.50276 * 174.58560 * 18 17 6 49 49 H 1.09000 * 109.49662 * 294.65592 * 18 17 6 50 50 H 0.97004 * 120.00089 * 24.99670 * 21 19 3 51 51 H 0.97003 * 120.00425 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9819 0.8418 5 6 1.6364 2.1276 -1.3094 6 7 2.2429 3.4652 -1.3497 7 6 1.4831 4.5575 -1.5644 8 8 0.2867 4.4417 -1.7270 9 6 2.1198 5.9228 -1.6025 10 6 1.0445 6.9802 -1.8603 11 6 1.6814 8.3454 -1.8990 12 6 2.1748 8.9525 -2.9932 13 6 2.6699 10.2094 -2.5761 14 6 2.4570 10.2917 -1.2505 15 6 2.8273 11.4566 -0.3690 16 8 1.8580 9.1598 -0.8457 17 6 3.6933 3.5896 -1.1511 18 6 4.0739 2.8882 0.1564 19 6 3.5653 1.4450 0.1242 20 1 3.8557 0.9366 1.0435 21 7 4.1496 0.7481 -1.0243 22 6 5.3876 0.1723 -0.9185 23 1 5.9333 0.2324 0.0115 24 6 5.9409 -0.4885 -2.0066 25 7 5.2757 -0.5622 -3.1398 26 14 7.6300 -1.2733 -1.8625 27 1 7.6083 -2.3016 -0.7912 28 1 7.9910 -1.9119 -3.1537 29 1 8.6333 -0.2308 -1.5277 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.9930 1.5390 -2.1547 36 1 0.5509 2.2146 -1.3567 37 1 2.6060 6.1237 -0.6478 38 1 2.8605 5.9561 -2.4015 39 1 0.5587 6.7791 -2.8151 40 1 0.3035 6.9470 -1.0615 41 1 2.1880 8.5568 -3.9981 42 1 3.1341 10.9579 -3.2011 43 1 2.5336 11.2425 0.6586 44 1 3.9043 11.6178 -0.4134 45 1 2.3113 12.3523 -0.7149 46 1 4.2176 3.1202 -1.9836 47 1 3.9651 4.6436 -1.0930 48 1 5.1582 2.8894 0.2678 49 1 3.6213 3.4146 0.9968 50 1 3.6596 0.6944 -1.8598 51 1 5.6622 -1.0243 -3.9001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037981089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:38 Heat of formation + Delta-G solvation = -28.910855 kcal Electronic energy + Delta-G solvation = -29407.342346 eV Core-core repulsion = 25500.893949 eV Total energy + Delta-G solvation = -3906.448397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.73415 -40.09628 -37.93259 -34.46372 -34.26472 -33.71608 -33.31280 -31.70171 -31.27573 -29.44324 -28.69491 -27.09473 -25.00387 -23.89856 -23.51561 -23.10841 -21.86158 -20.79525 -20.26097 -19.43357 -18.18462 -17.45096 -17.15848 -16.36504 -16.18861 -15.68665 -15.62789 -14.74490 -14.58785 -14.16804 -14.03443 -14.00236 -13.67941 -13.43543 -13.31094 -13.27924 -13.06441 -12.95042 -12.89420 -12.49263 -12.43797 -12.25446 -12.20974 -11.96860 -11.65067 -11.39799 -11.17906 -11.08236 -10.96461 -10.81193 -10.71166 -10.30445 -10.27149 -10.20240 -10.01493 -9.79176 -9.57104 -9.54136 -8.93273 -8.40555 -8.21945 -6.99256 -5.80523 -3.08949 1.53847 2.44649 2.71901 2.82471 3.31401 3.40547 3.45925 3.46586 4.38369 4.55956 4.66185 4.80919 4.87541 4.91686 4.93346 5.12490 5.14091 5.15785 5.28985 5.34404 5.36265 5.42017 5.53587 5.56350 5.58380 5.59424 5.70115 5.70300 5.80771 5.83078 5.84707 5.90305 5.92509 6.05810 6.09953 6.15747 6.19881 6.35473 6.38978 6.39951 6.41384 6.56742 6.63479 6.70851 6.77006 6.94086 7.01222 7.04216 7.66536 7.72254 8.37969 8.38246 9.49600 10.06354 10.41504 11.41780 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.002731 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.304430 B =10249.895422 C =11629.287152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.600 5.600 7 C 0.514 3.486 8 O -0.556 6.556 9 C -0.136 4.136 10 C -0.022 4.022 11 C -0.008 4.008 12 C -0.207 4.207 13 C -0.212 4.212 14 C -0.021 4.021 15 C -0.073 4.073 16 O -0.174 6.174 17 C 0.112 3.888 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.050 0.950 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 18.570 4.732 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.302 3.698 8 O -0.435 6.435 9 C -0.176 4.176 10 C -0.060 4.060 11 C -0.058 4.058 12 C -0.226 4.226 13 C -0.231 4.231 14 C -0.071 4.071 15 C -0.129 4.129 16 O -0.071 6.071 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.067 0.933 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.356 18.345 4.971 20.381 hybrid contribution 1.183 -0.428 -0.487 1.349 sum -6.173 17.917 4.484 19.474 Atomic orbital electron populations 1.21855 0.96821 1.01021 1.01348 1.21417 0.94270 0.95762 1.03354 1.21743 0.97344 0.96130 0.97065 0.91639 1.21679 0.98782 0.81674 0.98256 1.48137 1.08735 1.06593 1.69678 1.20433 0.86853 0.86060 0.76470 1.90663 1.14920 1.86804 1.51123 1.21678 0.99379 0.91792 1.04765 1.19857 0.96509 0.84244 1.05380 1.22457 1.04056 0.94235 0.85018 1.21605 1.05309 0.95955 0.99759 1.21545 1.07567 0.99373 0.94586 1.22421 1.01372 0.88574 0.94767 1.20287 1.02280 0.91947 0.98417 1.83973 1.61791 1.24657 1.36682 1.21758 0.79111 1.00084 1.00071 1.22525 1.01807 0.99317 0.95474 1.20223 0.89764 0.90619 0.92607 0.93156 1.42468 1.19021 1.64005 1.10572 1.19167 0.93603 1.27089 0.97053 0.91340 1.24697 0.98524 1.01466 0.96033 1.69631 1.38153 1.47999 1.02280 0.86321 0.84384 0.79193 0.76564 1.21383 1.21818 1.21375 0.93174 0.93396 0.92780 0.92057 0.90494 0.90794 0.89588 0.88661 0.88430 0.88008 0.89370 0.83413 0.83630 0.90651 0.89744 0.89845 0.89622 0.91178 0.90743 0.93343 0.78094 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.66 2.14 -90.50 -0.19 -1.85 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 1.98 5.03 -3.71 -0.02 1.96 16 6 N -0.60 -9.46 2.97 -172.78 -0.51 -9.97 16 7 C 0.51 7.83 7.70 -10.99 -0.08 7.75 16 8 O -0.56 -9.96 15.40 5.55 0.09 -9.88 16 9 C -0.14 -1.61 4.03 -27.89 -0.11 -1.72 16 10 C -0.02 -0.25 5.04 -27.88 -0.14 -0.39 16 11 C -0.01 -0.09 6.58 -35.62 -0.23 -0.32 16 12 C -0.21 -2.28 10.81 -39.70 -0.43 -2.71 16 13 C -0.21 -2.15 10.81 -39.70 -0.43 -2.58 16 14 C -0.02 -0.22 7.32 -35.62 -0.26 -0.48 16 15 C -0.07 -0.46 10.42 36.01 0.38 -0.08 16 16 O -0.17 -2.13 10.65 5.71 0.06 -2.07 16 17 C 0.11 1.73 6.08 -3.72 -0.02 1.71 16 18 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 19 C 0.18 3.26 2.53 -67.89 -0.17 3.08 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -16.20 3.72 -53.38 -0.20 -16.40 16 22 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 26 Si 0.90 21.61 29.55 -169.99 -5.02 16.58 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 35 H 0.07 1.38 6.64 -51.93 -0.34 1.04 16 36 H 0.09 1.45 5.73 -51.93 -0.30 1.15 16 37 H 0.10 1.05 7.69 -51.93 -0.40 0.65 16 38 H 0.10 1.06 7.94 -51.93 -0.41 0.65 16 39 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 42 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 1.57 7.74 -51.93 -0.40 1.16 16 47 H 0.07 0.89 5.93 -51.93 -0.31 0.58 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.38 9.32 5.95 -40.82 -0.24 9.08 16 51 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -30.31 403.03 -9.30 -39.61 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.61 Total: 10.64 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.90 Total: -8.49 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.01 Total: -52.46 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.15 Total: -11.95 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.31 -9.30 -39.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037981089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.700 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds