Wall clock time and date at job start Sat Apr 11 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99976 * 2 1 4 4 H 1.08992 * 109.86851 * 358.98914 * 3 2 1 5 5 O 1.43748 * 110.00226 * 237.90579 * 3 2 1 6 6 C 1.44380 * 106.97155 * 267.02017 * 5 3 2 7 7 C 1.54991 * 103.49169 * 319.93771 * 6 5 3 8 8 C 1.54099 * 109.87779 * 120.00044 * 3 2 1 9 9 H 1.08991 * 110.49111 * 358.73253 * 8 3 2 10 10 C 1.50700 * 110.48564 * 236.21725 * 8 3 2 11 11 O 1.21289 * 120.00011 * 0.02562 * 10 8 3 12 12 N 1.34780 * 120.00292 * 179.97438 * 10 8 3 13 13 C 1.46494 * 120.00103 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46928 * 180.02562 * 13 12 10 15 15 H 1.08988 * 109.39930 * 59.96102 * 14 13 12 16 16 C 1.54753 * 109.71357 * 179.97438 * 14 13 12 17 17 C 1.53706 * 108.24810 * 65.81127 * 16 14 13 18 18 H 1.09001 * 112.09958 * 188.14122 * 17 16 14 19 19 C 1.54609 * 108.36827 * 312.50853 * 17 16 14 20 20 C 1.54306 * 104.75262 * 88.89113 * 19 17 16 21 21 C 1.54615 * 104.75268 * 0.02562 * 20 19 17 22 22 H 1.08996 * 112.69223 * 147.07331 * 21 20 19 23 23 C 1.53148 * 109.43377 * 300.06491 * 14 13 12 24 24 N 1.48297 * 107.27510 * 64.53742 * 17 16 14 25 25 C 1.36934 * 128.21311 * 106.80845 * 24 17 16 26 26 H 1.08000 * 120.00244 * 162.50929 * 25 24 17 27 27 C 1.38814 * 119.99729 * 342.51422 * 25 24 17 28 28 N 1.31614 * 120.00096 * 348.65672 * 27 25 24 29 29 Si 1.86803 * 119.99628 * 168.66643 * 27 25 24 30 30 H 1.48499 * 109.47237 * 94.98630 * 29 27 25 31 31 H 1.48507 * 109.46537 * 214.98235 * 29 27 25 32 32 H 1.48501 * 109.47172 * 334.97958 * 29 27 25 33 33 H 1.07998 * 119.99718 * 0.02562 * 1 2 3 34 34 H 1.07997 * 119.99648 * 180.02562 * 1 2 3 35 35 H 1.08003 * 120.00047 * 179.97438 * 2 1 3 36 36 H 1.08995 * 110.61827 * 78.44185 * 6 5 3 37 37 H 1.09000 * 110.61461 * 201.28273 * 6 5 3 38 38 H 1.09008 * 110.90733 * 278.82738 * 7 6 5 39 39 H 1.09000 * 110.90774 * 155.22365 * 7 6 5 40 40 H 0.96996 * 119.99542 * 0.02562 * 12 10 8 41 41 H 1.09002 * 109.46824 * 60.00334 * 13 12 10 42 42 H 1.08999 * 109.47686 * 300.00633 * 13 12 10 43 43 H 1.08996 * 109.44621 * 306.44472 * 16 14 13 44 44 H 1.09004 * 110.31978 * 185.69065 * 16 14 13 45 45 H 1.09004 * 110.37729 * 207.70479 * 19 17 16 46 46 H 1.08995 * 110.38600 * 329.95479 * 19 17 16 47 47 H 1.09002 * 110.38165 * 241.18290 * 20 19 17 48 48 H 1.09005 * 110.38060 * 118.81824 * 20 19 17 49 49 H 1.08997 * 109.56743 * 174.00458 * 23 14 13 50 50 H 1.09004 * 109.56825 * 53.77169 * 23 14 13 51 51 H 0.97002 * 120.00096 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3612 2.1384 -0.0181 5 8 2.9309 1.3722 -1.1443 6 6 4.2194 0.8726 -0.7263 7 6 4.3943 1.4672 0.6943 8 6 2.9530 1.3966 1.2550 9 1 2.8267 0.5110 1.8776 10 6 2.6310 2.6420 2.0401 11 8 1.7700 3.4007 1.6475 12 7 3.2990 2.9123 3.1791 13 6 2.9863 4.1233 3.9419 14 6 3.8813 4.1907 5.1810 15 1 4.9262 4.2142 4.8720 16 6 3.5560 5.4686 5.9909 17 6 2.1248 5.3412 6.5368 18 1 1.7779 6.2660 6.9979 19 6 1.2028 4.8817 5.3839 20 6 1.2541 3.3402 5.4303 21 6 2.2019 3.0130 6.6073 22 1 1.9262 2.0953 7.1266 23 6 3.6357 2.9571 6.0547 24 7 2.1157 4.2031 7.4875 25 6 2.0444 4.2419 8.8545 26 1 1.7654 3.3562 9.4060 27 6 2.3307 5.4195 9.5313 28 7 2.8823 6.4288 8.8915 29 14 1.9332 5.5717 11.3502 30 1 3.1382 5.2350 12.1500 31 1 1.5130 6.9641 11.6501 32 1 0.8322 4.6371 11.6961 33 1 -0.5399 0.9353 -0.0004 34 1 -0.5399 -0.9353 0.0004 35 1 1.8500 -0.9353 0.0004 36 1 4.2149 -0.2167 -0.6886 37 1 5.0042 1.2292 -1.3935 38 1 4.7421 2.4991 0.6440 39 1 5.0737 0.8577 1.2901 40 1 3.9873 2.3054 3.4932 41 1 1.9408 4.0992 4.2492 42 1 3.1618 5.0005 3.3192 43 1 3.6214 6.3387 5.3377 44 1 4.2546 5.5791 6.8204 45 1 0.1842 5.2327 5.5496 46 1 1.5787 5.2472 4.4284 47 1 1.6566 2.9455 4.4974 48 1 0.2608 2.9327 5.6187 49 1 4.3455 2.9483 6.8818 50 1 3.7615 2.0549 5.4561 51 1 3.0826 7.2517 9.3645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048564005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:41 Heat of formation + Delta-G solvation = 56.824824 kcal Electronic energy + Delta-G solvation = -30844.736374 eV Core-core repulsion = 26942.005755 eV Total energy + Delta-G solvation = -3902.730619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34083 -40.28949 -38.29757 -34.80188 -33.93130 -33.07040 -32.28185 -31.34313 -30.66485 -29.66511 -28.78900 -26.67736 -24.17818 -23.34214 -23.15133 -22.45080 -20.69034 -20.32508 -20.05233 -19.37726 -18.79656 -17.56760 -17.05900 -16.61978 -16.27906 -15.84542 -15.45711 -15.16342 -14.77999 -14.27742 -14.01239 -13.75388 -13.63117 -13.30471 -13.04259 -12.77685 -12.65148 -12.37522 -12.08825 -12.01012 -11.70783 -11.69867 -11.55498 -11.52844 -11.39321 -11.25476 -11.17234 -10.88048 -10.79660 -10.56432 -10.14274 -9.99175 -9.90680 -9.75258 -9.64882 -9.51456 -9.46241 -9.38097 -9.19278 -8.61638 -8.18111 -6.79715 -5.80025 -3.13319 1.96143 2.66527 3.25292 3.36368 3.43587 3.44867 3.78028 4.20393 4.41039 4.45509 4.48496 4.79648 4.88444 4.92463 5.06032 5.20338 5.22134 5.29163 5.37669 5.40129 5.43482 5.47705 5.58153 5.60046 5.64774 5.73439 5.80561 5.84133 5.88423 6.03845 6.08620 6.16816 6.27876 6.33398 6.40564 6.42433 6.50305 6.55414 6.61091 6.63282 6.65943 6.74156 6.85525 6.94337 7.04989 7.10900 7.53383 7.55399 7.65306 7.74380 8.21721 8.30338 9.11744 9.74395 10.55015 11.33506 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.002766 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.375047 B =10121.279490 C =10451.327557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.113 3.887 4 H 0.122 0.878 5 O -0.363 6.363 6 C 0.045 3.955 7 C -0.145 4.145 8 C -0.139 4.139 9 H 0.110 0.890 10 C 0.517 3.483 11 O -0.540 6.540 12 N -0.717 5.717 13 C 0.003 3.997 14 C -0.088 4.088 15 H 0.050 0.950 16 C -0.106 4.106 17 C 0.183 3.817 18 H 0.101 0.899 19 C -0.171 4.171 20 C -0.162 4.162 21 C 0.151 3.849 22 H 0.064 0.936 23 C -0.123 4.123 24 N -0.583 5.583 25 C -0.225 4.225 26 H 0.073 0.927 27 C -0.003 4.003 28 N -0.909 5.909 29 Si 0.907 3.093 30 H -0.290 1.290 31 H -0.290 1.290 32 H -0.281 1.281 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.394 0.606 41 H 0.195 0.805 42 H 0.049 0.951 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.051 0.949 49 H 0.063 0.937 50 H 0.039 0.961 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 -11.824 -16.235 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.055 3.945 4 H 0.140 0.860 5 O -0.281 6.281 6 C -0.031 4.031 7 C -0.183 4.183 8 C -0.161 4.161 9 H 0.128 0.872 10 C 0.302 3.698 11 O -0.417 6.417 12 N -0.367 5.367 13 C -0.116 4.116 14 C -0.107 4.107 15 H 0.068 0.932 16 C -0.146 4.146 17 C 0.076 3.924 18 H 0.119 0.881 19 C -0.210 4.210 20 C -0.200 4.200 21 C 0.043 3.957 22 H 0.082 0.918 23 C -0.163 4.163 24 N -0.304 5.304 25 C -0.353 4.353 26 H 0.090 0.910 27 C -0.200 4.200 28 N -0.555 5.555 29 Si 0.737 3.263 30 H -0.217 1.217 31 H -0.217 1.217 32 H -0.207 1.207 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.228 0.772 41 H 0.210 0.790 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.058 0.942 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.995 -11.010 -16.456 19.899 hybrid contribution 0.668 -0.354 1.377 1.570 sum 2.663 -11.364 -15.079 19.069 Atomic orbital electron populations 1.23944 0.95828 1.02347 0.98123 1.23271 0.96482 0.98251 1.01825 1.21898 0.92251 0.96892 0.83477 0.86040 1.88985 1.21281 1.84787 1.33086 1.23560 0.86664 0.98300 0.94615 1.23151 0.94803 1.03264 0.97063 1.22707 0.96789 0.98462 0.98127 0.87172 1.20111 0.81805 0.86851 0.81036 1.90681 1.32534 1.49814 1.68701 1.46339 1.39726 1.26453 1.24184 1.25231 1.09737 0.84944 0.91688 1.21555 0.97181 0.98048 0.93872 0.93193 1.22304 1.01374 0.92738 0.98195 1.21370 0.90697 0.93670 0.86667 0.88099 1.23487 1.01262 0.95225 1.00991 1.23408 1.00044 0.96277 1.00281 1.21513 0.91694 0.92144 0.90356 0.91772 1.22195 1.00414 0.95176 0.98492 1.45148 1.84652 0.99732 1.00898 1.18951 1.39112 0.97343 0.79919 0.90955 1.24846 0.99963 0.97502 0.97734 1.69901 1.45593 1.04841 1.35143 0.86194 0.77947 0.77050 0.85082 1.21710 1.21668 1.20653 0.87978 0.88090 0.87299 0.91978 0.88703 0.89832 0.89273 0.77237 0.79021 0.93246 0.94218 0.89790 0.92665 0.89407 0.88848 0.93046 0.91869 0.94249 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 14.32 29.01 0.42 -1.09 16 2 C -0.18 -1.72 8.88 -36.02 -0.32 -2.04 16 3 C 0.11 1.27 3.44 -27.31 -0.09 1.18 16 4 H 0.12 1.66 6.11 -51.93 -0.32 1.34 16 5 O -0.36 -4.29 11.18 -35.23 -0.39 -4.68 16 6 C 0.05 0.37 7.66 38.21 0.29 0.66 16 7 C -0.14 -1.15 6.69 -24.73 -0.17 -1.32 16 8 C -0.14 -1.39 3.06 -90.25 -0.28 -1.66 16 9 H 0.11 0.90 7.69 -51.93 -0.40 0.50 16 10 C 0.52 6.90 6.77 -10.98 -0.07 6.83 16 11 O -0.54 -9.25 15.26 5.55 0.08 -9.16 16 12 N -0.72 -9.06 4.36 -60.29 -0.26 -9.33 16 13 C 0.00 0.04 2.70 -4.04 -0.01 0.03 16 14 C -0.09 -1.46 2.80 -89.62 -0.25 -1.71 16 15 H 0.05 0.78 8.14 -51.94 -0.42 0.36 16 16 C -0.11 -2.16 5.36 -25.44 -0.14 -2.29 16 17 C 0.18 4.06 3.08 -65.73 -0.20 3.86 16 18 H 0.10 2.59 6.60 -51.93 -0.34 2.25 16 19 C -0.17 -3.23 5.72 -25.20 -0.14 -3.37 16 20 C -0.16 -2.84 5.72 -25.20 -0.14 -2.99 16 21 C 0.15 2.94 4.33 -65.71 -0.28 2.65 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 23 C -0.12 -2.10 5.26 -26.26 -0.14 -2.24 16 24 N -0.58 -13.86 2.80 -152.73 -0.43 -14.29 16 25 C -0.22 -5.97 10.36 -15.06 -0.16 -6.12 16 26 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 27 C 0.00 -0.08 5.39 -17.43 -0.09 -0.18 16 28 N -0.91 -25.12 10.47 55.49 0.58 -24.54 16 29 Si 0.91 21.39 29.57 -169.99 -5.03 16.36 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 31 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 32 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 33 H 0.10 0.97 7.85 -52.49 -0.41 0.56 16 34 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.11 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.76 7.87 -51.92 -0.41 0.35 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.39 4.10 7.31 -40.82 -0.30 3.80 16 41 H 0.19 3.21 1.12 -165.02 -0.19 3.02 16 42 H 0.05 0.81 8.01 -51.93 -0.42 0.40 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.99 7.69 -51.93 -0.40 1.59 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.09 1.55 4.87 -51.93 -0.25 1.30 16 47 H 0.09 1.50 3.93 -51.93 -0.20 1.29 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.04 0.55 6.71 -51.93 -0.35 0.20 16 51 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -30.17 377.81 -9.72 -39.88 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.18 Total: 9.88 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.78 Total: -9.82 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.11 Total: -48.16 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.31 Total: -13.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.17 -9.72 -39.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048564005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.709 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds