Wall clock time and date at job start Sat Apr 11 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99976 * 2 1 4 4 H 1.08992 * 109.86851 * 358.98914 * 3 2 1 5 5 O 1.43748 * 110.00226 * 237.90579 * 3 2 1 6 6 C 1.44380 * 106.97155 * 267.02017 * 5 3 2 7 7 C 1.54991 * 103.49169 * 319.93771 * 6 5 3 8 8 C 1.54099 * 109.87779 * 120.00044 * 3 2 1 9 9 H 1.08991 * 110.49111 * 358.73253 * 8 3 2 10 10 C 1.50700 * 110.48564 * 236.21725 * 8 3 2 11 11 O 1.21289 * 120.00011 * 0.02562 * 10 8 3 12 12 N 1.34780 * 120.00292 * 179.97438 * 10 8 3 13 13 C 1.46494 * 120.00103 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46928 * 180.02562 * 13 12 10 15 15 H 1.08988 * 109.39930 * 59.96102 * 14 13 12 16 16 C 1.54753 * 109.71357 * 179.97438 * 14 13 12 17 17 C 1.53706 * 108.24810 * 65.81127 * 16 14 13 18 18 H 1.09001 * 112.09958 * 188.14122 * 17 16 14 19 19 C 1.54609 * 108.36827 * 312.50853 * 17 16 14 20 20 C 1.54306 * 104.75262 * 88.89113 * 19 17 16 21 21 C 1.54615 * 104.75268 * 0.02562 * 20 19 17 22 22 H 1.08996 * 112.69223 * 147.07331 * 21 20 19 23 23 C 1.53148 * 109.43377 * 300.06491 * 14 13 12 24 24 N 1.48297 * 107.27510 * 64.53742 * 17 16 14 25 25 C 1.36934 * 128.21311 * 106.80845 * 24 17 16 26 26 H 1.08000 * 120.00244 * 162.50929 * 25 24 17 27 27 C 1.38814 * 119.99729 * 342.51422 * 25 24 17 28 28 N 1.31614 * 120.00096 * 348.65672 * 27 25 24 29 29 Si 1.86803 * 119.99628 * 168.66643 * 27 25 24 30 30 H 1.48499 * 109.47237 * 94.98630 * 29 27 25 31 31 H 1.48507 * 109.46537 * 214.98235 * 29 27 25 32 32 H 1.48501 * 109.47172 * 334.97958 * 29 27 25 33 33 H 1.07998 * 119.99718 * 0.02562 * 1 2 3 34 34 H 1.07997 * 119.99648 * 180.02562 * 1 2 3 35 35 H 1.08003 * 120.00047 * 179.97438 * 2 1 3 36 36 H 1.08995 * 110.61827 * 78.44185 * 6 5 3 37 37 H 1.09000 * 110.61461 * 201.28273 * 6 5 3 38 38 H 1.09008 * 110.90733 * 278.82738 * 7 6 5 39 39 H 1.09000 * 110.90774 * 155.22365 * 7 6 5 40 40 H 0.96996 * 119.99542 * 0.02562 * 12 10 8 41 41 H 1.09002 * 109.46824 * 60.00334 * 13 12 10 42 42 H 1.08999 * 109.47686 * 300.00633 * 13 12 10 43 43 H 1.08996 * 109.44621 * 306.44472 * 16 14 13 44 44 H 1.09004 * 110.31978 * 185.69065 * 16 14 13 45 45 H 1.09004 * 110.37729 * 207.70479 * 19 17 16 46 46 H 1.08995 * 110.38600 * 329.95479 * 19 17 16 47 47 H 1.09002 * 110.38165 * 241.18290 * 20 19 17 48 48 H 1.09005 * 110.38060 * 118.81824 * 20 19 17 49 49 H 1.08997 * 109.56743 * 174.00458 * 23 14 13 50 50 H 1.09004 * 109.56825 * 53.77169 * 23 14 13 51 51 H 0.97002 * 120.00096 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3612 2.1384 -0.0181 5 8 2.9309 1.3722 -1.1443 6 6 4.2194 0.8726 -0.7263 7 6 4.3943 1.4672 0.6943 8 6 2.9530 1.3966 1.2550 9 1 2.8267 0.5110 1.8776 10 6 2.6310 2.6420 2.0401 11 8 1.7700 3.4007 1.6475 12 7 3.2990 2.9123 3.1791 13 6 2.9863 4.1233 3.9419 14 6 3.8813 4.1907 5.1810 15 1 4.9262 4.2142 4.8720 16 6 3.5560 5.4686 5.9909 17 6 2.1248 5.3412 6.5368 18 1 1.7779 6.2660 6.9979 19 6 1.2028 4.8817 5.3839 20 6 1.2541 3.3402 5.4303 21 6 2.2019 3.0130 6.6073 22 1 1.9262 2.0953 7.1266 23 6 3.6357 2.9571 6.0547 24 7 2.1157 4.2031 7.4875 25 6 2.0444 4.2419 8.8545 26 1 1.7654 3.3562 9.4060 27 6 2.3307 5.4195 9.5313 28 7 2.8823 6.4288 8.8915 29 14 1.9332 5.5717 11.3502 30 1 3.1382 5.2350 12.1500 31 1 1.5130 6.9641 11.6501 32 1 0.8322 4.6371 11.6961 33 1 -0.5399 0.9353 -0.0004 34 1 -0.5399 -0.9353 0.0004 35 1 1.8500 -0.9353 0.0004 36 1 4.2149 -0.2167 -0.6886 37 1 5.0042 1.2292 -1.3935 38 1 4.7421 2.4991 0.6440 39 1 5.0737 0.8577 1.2901 40 1 3.9873 2.3054 3.4932 41 1 1.9408 4.0992 4.2492 42 1 3.1618 5.0005 3.3192 43 1 3.6214 6.3387 5.3377 44 1 4.2546 5.5791 6.8204 45 1 0.1842 5.2327 5.5496 46 1 1.5787 5.2472 4.4284 47 1 1.6566 2.9455 4.4974 48 1 0.2608 2.9327 5.6187 49 1 4.3455 2.9483 6.8818 50 1 3.7615 2.0549 5.4561 51 1 3.0826 7.2517 9.3645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048564005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:40 Heat of formation + Delta-G solvation = 38.459780 kcal Electronic energy + Delta-G solvation = -30845.532742 eV Core-core repulsion = 26942.005755 eV Total energy + Delta-G solvation = -3903.526987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72113 -41.25028 -39.33693 -36.22032 -34.66768 -34.57922 -33.37779 -32.74165 -32.26400 -31.31885 -29.54346 -28.22203 -25.65146 -24.83359 -24.29731 -23.24192 -22.13601 -21.48570 -20.84413 -20.81317 -20.38798 -18.78007 -18.38796 -17.69547 -17.23837 -16.94530 -16.74559 -16.38751 -15.99334 -15.91563 -15.05062 -14.79299 -14.65486 -14.53182 -14.42766 -14.19627 -13.99296 -13.66578 -13.35646 -13.17058 -13.13545 -13.03687 -12.84774 -12.73855 -12.66144 -12.53607 -12.42084 -12.29769 -12.19225 -11.98017 -11.85717 -11.44163 -11.25129 -11.03302 -10.93792 -10.81781 -10.77004 -10.65247 -10.46607 -10.32882 -9.48600 -8.69650 -7.83142 -5.16065 1.27096 1.46358 1.48283 1.56602 1.65156 2.22112 2.51938 3.09673 3.34801 3.48166 3.60850 3.66980 3.70816 3.96271 3.96664 4.03791 4.17122 4.24268 4.25277 4.27087 4.28556 4.33801 4.38070 4.56721 4.57374 4.60632 4.73155 4.80101 4.81294 4.85688 4.91162 4.91324 5.01800 5.04978 5.05251 5.10446 5.11727 5.19844 5.30779 5.39644 5.50378 5.55739 5.57535 5.61560 5.64216 5.78533 5.82979 5.92015 5.94109 6.29334 6.62339 7.11849 7.29799 7.78984 8.61212 9.28947 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.002766 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.375047 B =10121.279490 C =10451.327557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C 0.109 3.891 4 H 0.088 0.912 5 O -0.391 6.391 6 C 0.039 3.961 7 C -0.139 4.139 8 C -0.131 4.131 9 H 0.139 0.861 10 C 0.515 3.485 11 O -0.582 6.582 12 N -0.706 5.706 13 C 0.015 3.985 14 C -0.075 4.075 15 H 0.070 0.930 16 C -0.100 4.100 17 C 0.178 3.822 18 H 0.056 0.944 19 C -0.163 4.163 20 C -0.148 4.148 21 C 0.142 3.858 22 H 0.067 0.933 23 C -0.114 4.114 24 N -0.606 5.606 25 C -0.233 4.233 26 H 0.072 0.928 27 C -0.056 4.056 28 N -0.932 5.932 29 Si 0.966 3.034 30 H -0.289 1.289 31 H -0.297 1.297 32 H -0.274 1.274 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.410 0.590 41 H 0.182 0.818 42 H 0.041 0.959 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.104 0.896 47 H 0.117 0.883 48 H 0.053 0.947 49 H 0.040 0.960 50 H 0.084 0.916 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 -14.984 -17.566 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.201 4.201 3 C 0.051 3.949 4 H 0.106 0.894 5 O -0.311 6.311 6 C -0.036 4.036 7 C -0.177 4.177 8 C -0.153 4.153 9 H 0.157 0.843 10 C 0.303 3.697 11 O -0.462 6.462 12 N -0.357 5.357 13 C -0.105 4.105 14 C -0.094 4.094 15 H 0.088 0.912 16 C -0.140 4.140 17 C 0.071 3.929 18 H 0.074 0.926 19 C -0.201 4.201 20 C -0.186 4.186 21 C 0.036 3.964 22 H 0.085 0.915 23 C -0.154 4.154 24 N -0.328 5.328 25 C -0.362 4.362 26 H 0.090 0.910 27 C -0.251 4.251 28 N -0.579 5.579 29 Si 0.795 3.205 30 H -0.216 1.216 31 H -0.224 1.224 32 H -0.199 1.199 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.142 0.858 40 H 0.247 0.753 41 H 0.197 0.803 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.121 0.879 47 H 0.134 0.866 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.102 0.898 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.014 -14.219 -17.800 22.981 hybrid contribution 0.337 0.642 1.725 1.871 sum 3.351 -13.577 -16.075 21.307 Atomic orbital electron populations 1.24097 0.96052 1.02734 0.97911 1.23343 0.96534 0.98186 1.01999 1.21809 0.92231 0.96724 0.84144 0.89446 1.88954 1.22940 1.85450 1.33731 1.23821 0.85327 0.99628 0.94865 1.23192 0.93864 1.03241 0.97364 1.22725 0.97799 0.97346 0.97384 0.84346 1.20719 0.80809 0.87427 0.80790 1.90681 1.34406 1.51475 1.69639 1.46113 1.40088 1.25675 1.23832 1.24768 1.08451 0.86139 0.91163 1.21398 0.98568 0.95797 0.93661 0.91192 1.22096 0.99141 0.95337 0.97442 1.21272 0.92428 0.91831 0.87367 0.92593 1.23444 1.00032 0.96427 1.00239 1.23336 0.99920 0.94954 1.00421 1.21776 0.93707 0.90694 0.90257 0.91491 1.22078 0.97838 0.97120 0.98320 1.45348 1.85047 1.01785 1.00634 1.19236 1.38102 0.97243 0.81660 0.91010 1.25530 1.00750 0.97567 1.01224 1.70082 1.46884 1.04894 1.36066 0.85262 0.77700 0.76447 0.81050 1.21614 1.22428 1.19859 0.89370 0.86041 0.84992 0.89764 0.87627 0.91203 0.85817 0.75330 0.80269 0.94032 0.93670 0.93764 0.93372 0.87870 0.86570 0.92815 0.94157 0.89780 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 14.32 67.78 0.97 -1.86 16 2 C -0.18 -3.03 8.88 25.65 0.23 -2.80 16 3 C 0.11 2.28 3.44 30.22 0.10 2.38 16 4 H 0.09 2.42 6.11 -2.39 -0.01 2.41 16 5 O -0.39 -8.59 11.18 -148.98 -1.67 -10.26 16 6 C 0.04 0.51 7.66 72.66 0.56 1.06 16 7 C -0.14 -1.66 6.69 31.89 0.21 -1.44 16 8 C -0.13 -2.17 3.06 -10.55 -0.03 -2.20 16 9 H 0.14 1.55 7.69 -2.39 -0.02 1.53 16 10 C 0.52 12.44 6.77 87.66 0.59 13.04 16 11 O -0.58 -19.40 15.26 -3.06 -0.05 -19.45 16 12 N -0.71 -15.33 4.36 -463.06 -2.02 -17.35 16 13 C 0.01 0.42 2.70 86.38 0.23 0.65 16 14 C -0.08 -2.37 2.80 -10.15 -0.03 -2.40 16 15 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 16 C -0.10 -4.14 5.36 31.43 0.17 -3.97 16 17 C 0.18 8.13 3.08 45.43 0.14 8.27 16 18 H 0.06 3.04 6.60 -2.39 -0.02 3.03 16 19 C -0.16 -6.13 5.72 31.58 0.18 -5.94 16 20 C -0.15 -4.95 5.72 31.59 0.18 -4.77 16 21 C 0.14 5.34 4.33 45.46 0.20 5.54 16 22 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 23 C -0.11 -3.61 5.26 30.90 0.16 -3.45 16 24 N -0.61 -29.24 2.80 -637.13 -1.79 -31.02 16 25 C -0.23 -12.62 10.36 84.03 0.87 -11.75 16 26 H 0.07 3.79 7.85 -2.91 -0.02 3.76 16 27 C -0.06 -3.10 5.39 84.86 0.46 -2.64 16 28 N -0.93 -53.79 10.47 21.65 0.23 -53.56 16 29 Si 0.97 45.09 29.57 68.60 2.03 47.12 16 30 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 31 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 32 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 33 H 0.09 1.67 7.85 -2.91 -0.02 1.65 16 34 H 0.12 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.05 7.87 -2.38 -0.02 1.03 16 39 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.41 6.45 7.31 -92.71 -0.68 5.77 16 41 H 0.18 5.66 1.12 -108.61 -0.12 5.53 16 42 H 0.04 1.29 8.01 -2.39 -0.02 1.27 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 2.17 7.69 -2.39 -0.02 2.15 16 45 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.10 3.57 4.87 -2.39 -0.01 3.56 16 47 H 0.12 3.37 3.93 -2.39 -0.01 3.37 16 48 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 49 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.08 1.93 6.71 -2.38 -0.02 1.91 16 51 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -69.77 377.81 2.07 -67.70 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.14 Total: 29.12 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 5.20 Total: -12.29 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -3.58 Total: -101.94 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.71 Total: -29.71 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.77 2.07 -67.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048564005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.158 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds