Wall clock time and date at job start Sat Apr 11 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 H 1.09002 * 109.47184 * 304.99739 * 3 2 1 5 5 C 1.52997 * 109.47444 * 64.99510 * 3 2 1 6 6 C 1.50704 * 109.47254 * 185.00390 * 3 2 1 7 7 O 1.21281 * 119.99436 * 359.97438 * 6 3 2 8 8 N 1.34768 * 120.00108 * 180.02562 * 6 3 2 9 9 C 1.46507 * 120.00055 * 179.97438 * 8 6 3 10 10 C 1.52998 * 109.47402 * 179.97438 * 9 8 6 11 11 C 1.52991 * 109.47144 * 180.02562 * 10 9 8 12 12 N 1.46903 * 109.47169 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00032 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47051 * 179.97438 * 13 12 11 15 15 C 1.38303 * 119.93084 * 269.72998 * 14 13 12 16 16 C 1.38103 * 120.06720 * 179.72409 * 15 14 13 17 17 C 1.38880 * 119.92712 * 0.56906 * 16 15 14 18 18 O 1.35758 * 120.06680 * 179.67943 * 17 16 15 19 19 C 1.34827 * 116.99953 * 174.48560 * 18 17 16 20 20 H 1.07998 * 120.00155 * 5.05528 * 19 18 17 21 21 C 1.38654 * 119.99724 * 185.06191 * 19 18 17 22 22 N 1.31558 * 119.99594 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00377 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47272 * 90.00208 * 23 21 19 25 25 H 1.48498 * 109.47284 * 210.00637 * 23 21 19 26 26 H 1.48504 * 109.46793 * 330.00174 * 23 21 19 27 27 C 1.38875 * 119.86510 * 359.70021 * 17 16 15 28 28 C 1.38099 * 119.93072 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47113 * 300.00438 * 1 2 3 31 31 H 1.08999 * 109.47265 * 60.00367 * 1 2 3 32 32 H 1.09002 * 109.47314 * 240.00321 * 2 1 3 33 33 H 1.08999 * 109.47265 * 119.99632 * 2 1 3 34 34 H 1.08993 * 109.47674 * 300.00359 * 5 3 2 35 35 H 1.09003 * 109.46757 * 60.00516 * 5 3 2 36 36 H 1.09006 * 109.46908 * 179.97438 * 5 3 2 37 37 H 0.97006 * 120.00297 * 359.97438 * 8 6 3 38 38 H 1.09002 * 109.46968 * 299.99949 * 9 8 6 39 39 H 1.08999 * 109.46901 * 59.99602 * 9 8 6 40 40 H 1.09003 * 109.46874 * 300.00379 * 10 9 8 41 41 H 1.08998 * 109.46656 * 59.99815 * 10 9 8 42 42 H 1.09003 * 109.47458 * 299.99915 * 11 10 9 43 43 H 1.08998 * 109.47582 * 60.00276 * 11 10 9 44 44 H 1.00904 * 110.99543 * 303.95125 * 12 11 10 45 45 H 1.08992 * 109.46985 * 299.99426 * 13 12 11 46 46 H 1.08996 * 109.47354 * 59.99863 * 13 12 11 47 47 H 1.07999 * 119.96775 * 359.97145 * 15 14 13 48 48 H 1.07994 * 120.03697 * 180.26469 * 16 15 14 49 49 H 0.97006 * 120.00201 * 179.97438 * 22 21 19 50 50 H 1.07999 * 120.03769 * 179.97438 * 27 17 16 51 51 H 1.08001 * 119.96549 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6351 2.1267 1.3072 6 6 3.5419 1.4444 -0.1239 7 8 4.1450 0.3952 -0.2039 8 7 4.2149 2.6119 -0.1449 9 6 5.6750 2.6137 -0.2648 10 6 6.1850 4.0562 -0.2649 11 6 7.7097 4.0580 -0.3908 12 7 8.1994 5.4430 -0.3903 13 6 9.6629 5.4840 -0.5106 14 6 10.1273 6.9176 -0.5072 15 6 10.2462 7.6073 -1.7001 16 6 10.6660 8.9230 -1.6997 17 6 10.9803 9.5497 -0.5009 18 8 11.3995 10.8410 -0.4979 19 6 11.5780 11.4237 0.7048 20 1 11.4678 10.8424 1.6082 21 6 11.9029 12.7695 0.7816 22 7 12.0765 13.3382 1.9551 23 14 12.0939 13.7749 -0.7811 24 1 10.7837 14.3675 -1.1518 25 1 13.0815 14.8603 -0.5537 26 1 12.5685 12.8962 -1.8801 27 6 10.8652 8.8527 0.6948 28 6 10.4394 7.5390 0.6883 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1253 1.3969 35 1 2.0698 1.5877 2.1491 36 1 1.9989 3.1542 1.3073 37 1 3.7325 3.4510 -0.0806 38 1 6.1094 2.0744 0.5770 39 1 5.9636 2.1265 -1.1962 40 1 5.7506 4.5950 -1.1070 41 1 5.8963 4.5436 0.6663 42 1 8.1445 3.5190 0.4510 43 1 7.9981 3.5707 -1.3222 44 1 7.7615 5.9816 -1.1227 45 1 10.1115 4.9545 0.3299 46 1 9.9644 5.0070 -1.4431 47 1 10.0067 7.1178 -2.6324 48 1 10.7546 9.4624 -2.6311 49 1 12.3042 14.2797 2.0089 50 1 11.1092 9.3373 1.6286 51 1 10.3501 6.9963 1.6178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154773409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:01 Heat of formation + Delta-G solvation = -64.613929 kcal Electronic energy + Delta-G solvation = -26693.036191 eV Core-core repulsion = 22785.039592 eV Total energy + Delta-G solvation = -3907.996599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.32363 -39.25627 -37.54951 -36.58307 -35.80863 -35.01628 -32.50594 -31.99936 -30.32842 -30.22074 -29.14409 -26.31318 -25.66659 -24.83816 -23.34556 -22.13639 -21.94992 -21.88451 -20.40559 -20.02258 -17.90329 -17.50215 -17.26508 -16.63686 -16.36363 -15.94581 -15.32795 -15.05460 -14.94222 -14.59581 -14.36810 -14.12336 -13.98069 -13.94533 -13.78122 -13.63138 -13.18174 -12.98691 -12.64666 -12.63005 -12.56999 -12.29079 -12.19444 -12.12861 -12.00061 -11.95069 -11.66064 -11.30866 -11.27526 -11.17998 -11.14212 -10.76451 -10.73495 -10.69948 -10.16572 -10.06509 -9.44799 -9.40289 -8.89021 -8.47507 -8.27096 -7.34921 -6.43410 -4.10092 2.11004 2.15473 2.29061 2.77459 3.20337 3.24018 3.38458 4.06147 4.20057 4.21870 4.28916 4.43181 4.53234 4.62243 4.78515 4.83058 4.84838 4.87425 4.92874 5.01817 5.08272 5.09235 5.17079 5.27527 5.30783 5.32804 5.38235 5.39554 5.46130 5.49109 5.62394 5.64137 5.70693 5.77563 5.79403 5.82258 5.85336 5.89572 6.06090 6.12061 6.32366 6.54785 6.77356 6.90653 7.04301 7.10182 7.20156 7.30870 7.37393 7.59513 7.78691 7.85788 8.01959 8.91778 9.53968 10.64173 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.001384 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.004701 B =20232.331971 C =20750.836945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.146 4.146 6 C 0.515 3.485 7 O -0.541 6.541 8 N -0.730 5.730 9 C 0.120 3.880 10 C -0.130 4.130 11 C 0.061 3.939 12 N -0.685 5.685 13 C 0.117 3.883 14 C -0.178 4.178 15 C -0.071 4.071 16 C -0.194 4.194 17 C 0.161 3.839 18 O -0.217 6.217 19 C -0.390 4.390 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.879 5.879 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.222 4.222 28 C -0.050 4.050 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.341 0.659 45 H 0.072 0.928 46 H 0.029 0.971 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.279 0.721 50 H 0.133 0.867 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.636 -22.342 -4.852 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.301 3.699 7 O -0.418 6.418 8 N -0.382 5.382 9 C -0.005 4.005 10 C -0.168 4.168 11 C -0.069 4.069 12 N -0.316 5.316 13 C -0.011 4.011 14 C -0.179 4.179 15 C -0.090 4.090 16 C -0.213 4.213 17 C 0.109 3.891 18 O -0.122 6.122 19 C -0.466 4.466 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.241 4.241 28 C -0.069 4.069 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.160 0.840 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.127 0.873 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.150 0.850 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.049 -22.691 -4.275 29.934 hybrid contribution 0.055 0.838 -1.305 1.552 sum -18.994 -21.853 -5.580 29.487 Atomic orbital electron populations 1.21849 0.95390 1.01999 1.01912 1.21346 0.95416 0.94093 1.03526 1.21372 0.91671 0.99588 1.00670 0.88504 1.21841 1.02527 1.00233 0.95797 1.20741 0.90087 0.83494 0.75569 1.90707 1.70426 1.31457 1.49176 1.46049 1.07969 1.08889 1.75305 1.21316 0.79538 0.97293 1.02306 1.21757 0.96146 0.95252 1.03623 1.21822 0.93782 0.90721 1.00551 1.60551 1.06330 1.10969 1.53784 1.20633 0.86817 0.93933 0.99726 1.19180 1.09576 0.95703 0.93479 1.20479 0.98528 0.93370 0.96587 1.20162 1.09478 0.95496 0.96152 1.19143 0.91665 0.84841 0.93447 1.83570 1.74149 1.21243 1.33276 1.20778 1.48810 0.94362 0.82609 0.87586 1.24465 0.95736 0.95709 0.98044 1.69648 1.45679 1.13096 1.23236 0.86184 0.78475 0.79419 0.82836 1.19888 1.20761 1.18394 1.21291 1.08632 0.95424 0.98796 1.20632 0.95769 0.93831 0.96636 0.92412 0.92374 0.92684 0.91158 0.91292 0.91034 0.91977 0.92087 0.76421 0.91307 0.91572 0.91348 0.90162 0.90782 0.95242 0.84049 0.90976 0.95276 0.87329 0.86628 0.91038 0.84959 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.67 37.16 0.36 -0.33 16 2 C -0.11 -0.67 4.75 -26.73 -0.13 -0.80 16 3 C -0.11 -0.64 2.72 -91.77 -0.25 -0.89 16 4 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 5 C -0.15 -0.63 8.84 37.16 0.33 -0.30 16 6 C 0.51 4.49 7.16 -10.99 -0.08 4.41 16 7 O -0.54 -6.98 15.92 5.56 0.09 -6.89 16 8 N -0.73 -4.97 5.45 -60.29 -0.33 -5.30 16 9 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 10 C -0.13 -0.90 5.59 -26.74 -0.15 -1.05 16 11 C 0.06 0.53 5.68 -3.83 -0.02 0.51 16 12 N -0.69 -7.61 6.49 -115.06 -0.75 -8.36 16 13 C 0.12 1.45 5.81 -4.97 -0.03 1.42 16 14 C -0.18 -2.83 5.40 -104.57 -0.56 -3.39 16 15 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 16 C -0.19 -3.74 9.99 -39.39 -0.39 -4.14 16 17 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 18 O -0.22 -5.70 8.59 0.03 0.00 -5.70 16 19 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 20 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -25.23 13.96 55.48 0.77 -24.46 16 23 Si 0.91 21.51 28.62 -169.99 -4.86 16.65 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.26 -6.20 7.11 56.52 0.40 -5.79 16 27 C -0.22 -4.74 9.17 -39.40 -0.36 -5.10 16 28 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.22 6.56 -51.93 -0.34 -0.12 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.54 7.96 -51.93 -0.41 0.12 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.23 6.56 -51.93 -0.34 -0.11 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.21 7.56 -51.93 -0.39 -0.19 16 37 H 0.40 1.76 7.89 -40.82 -0.32 1.44 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.34 3.68 8.72 -39.29 -0.34 3.34 16 45 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 46 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 47 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 48 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 49 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 51 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 416.82 15.07 6.28 6.28 Total: -1.00 -31.66 416.82 -9.55 -41.21 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.63 Total: 3.68 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.13 Total: -17.11 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.30 Total: -38.11 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.66 -9.55 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154773409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.408 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds