Wall clock time and date at job start Sat Apr 11 2020 04:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47187 * 180.02562 * 9 7 6 11 11 O 1.42900 * 109.47280 * 180.02562 * 10 9 7 12 12 C 1.35905 * 117.00022 * 179.97438 * 11 10 9 13 13 C 1.38735 * 120.05252 * 359.72863 * 12 11 10 14 14 C 1.38153 * 119.93807 * 179.73703 * 13 12 11 15 15 C 1.50693 * 119.96822 * 180.27221 * 14 13 12 16 16 C 1.38259 * 120.05380 * 0.51608 * 14 13 12 17 17 C 1.38263 * 120.11622 * 359.76049 * 16 14 13 18 18 C 1.50703 * 119.97330 * 180.02562 * 17 16 14 19 19 C 1.38141 * 120.05539 * 359.97438 * 17 16 14 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 30 30 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 1.09008 * 109.46844 * 299.99705 * 10 9 7 40 40 H 1.08996 * 109.47561 * 59.99717 * 10 9 7 41 41 H 1.07992 * 120.03025 * 359.97438 * 13 12 11 42 42 H 1.09000 * 109.47747 * 270.23732 * 15 14 13 43 43 H 1.09001 * 109.47398 * 30.24175 * 15 14 13 44 44 H 1.09007 * 109.47227 * 150.23512 * 15 14 13 45 45 H 1.08002 * 119.94342 * 179.73948 * 16 14 13 46 46 H 1.09002 * 109.46987 * 269.97358 * 18 17 16 47 47 H 1.09001 * 109.47400 * 29.98062 * 18 17 16 48 48 H 1.09003 * 109.47155 * 149.97948 * 18 17 16 49 49 H 1.08004 * 120.02850 * 179.97438 * 19 17 16 50 50 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 51 51 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.4228 4.4768 -0.0903 11 8 7.9089 5.8154 0.0276 12 6 9.2531 5.9939 -0.0630 13 6 10.0876 4.9024 -0.2556 14 6 11.4532 5.0872 -0.3528 15 6 12.3597 3.9028 -0.5682 16 6 11.9893 6.3573 -0.2475 17 6 11.1603 7.4460 -0.0498 18 6 11.7480 8.8291 0.0639 19 6 9.7936 7.2672 0.0426 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 7.8542 3.8631 0.7006 40 1 7.7071 4.0708 -1.0610 41 1 9.6696 3.9097 -0.3334 42 1 12.6632 3.4972 0.3969 43 1 11.8287 3.1369 -1.1335 44 1 13.2430 4.2176 -1.1240 45 1 13.0575 6.4992 -0.3196 46 1 11.9745 9.0428 1.1085 47 1 12.6635 8.8844 -0.5252 48 1 11.0311 9.5603 -0.3094 49 1 9.1465 8.1180 0.1975 50 1 2.2720 2.1231 1.9978 51 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665799451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:04:06 Heat of formation + Delta-G solvation = -65.929197 kcal Electronic energy + Delta-G solvation = -27855.452037 eV Core-core repulsion = 23947.398404 eV Total energy + Delta-G solvation = -3908.053633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46933 -39.56591 -38.00537 -36.89148 -33.92035 -33.80467 -32.72612 -32.37824 -30.62657 -29.62750 -27.90492 -27.48104 -27.08648 -24.62606 -23.37002 -22.42798 -21.88426 -20.78208 -20.37425 -19.76092 -17.96874 -17.51031 -16.62137 -16.50637 -16.39453 -16.06018 -15.65834 -15.29174 -14.71904 -14.38146 -14.11103 -14.06673 -13.76911 -13.66472 -13.49478 -13.29196 -13.22032 -13.19868 -13.13605 -12.81158 -12.55740 -12.18775 -12.04540 -11.82289 -11.69658 -11.64601 -11.53860 -11.04640 -10.97365 -10.83804 -10.72512 -10.61162 -10.40367 -10.15518 -9.93353 -9.77022 -9.25427 -9.00451 -8.84600 -8.80529 -8.32588 -7.15220 -6.16570 -3.18643 1.09690 1.25351 2.73486 2.77364 3.46822 3.48869 3.50679 3.66444 3.67365 4.46857 4.51114 4.59366 4.67316 4.82564 4.83473 4.97354 5.02195 5.08170 5.11963 5.26078 5.29219 5.31126 5.33237 5.35185 5.35508 5.44811 5.49288 5.57770 5.60068 5.62037 5.73723 5.78437 5.85211 5.86110 5.92881 6.02605 6.14001 6.26877 6.28977 6.39793 6.42656 6.46852 6.50970 6.60357 6.74219 6.90238 7.17328 7.26397 7.73582 7.74045 8.36442 8.67073 9.11564 9.98452 10.13218 11.30329 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.001997 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.190875 B =14014.433578 C =15462.770785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.710 5.710 7 C 0.517 3.483 8 O -0.557 6.557 9 C -0.142 4.142 10 C 0.078 3.922 11 O -0.316 6.316 12 C 0.143 3.857 13 C -0.214 4.214 14 C -0.044 4.044 15 C -0.117 4.117 16 C -0.163 4.163 17 C -0.047 4.047 18 C -0.114 4.114 19 C -0.161 4.161 20 N -0.732 5.732 21 C -0.329 4.329 22 H 0.068 0.932 23 C -0.043 4.043 24 N -0.941 5.941 25 Si 1.076 2.924 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.412 0.588 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.121 0.879 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.129 0.871 50 H 0.368 0.632 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.622 5.217 -9.725 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.361 5.361 7 C 0.303 3.697 8 O -0.436 6.436 9 C -0.182 4.182 10 C 0.003 3.997 11 O -0.230 6.230 12 C 0.097 3.903 13 C -0.233 4.233 14 C -0.044 4.044 15 C -0.173 4.173 16 C -0.181 4.181 17 C -0.047 4.047 18 C -0.170 4.170 19 C -0.179 4.179 20 N -0.376 5.376 21 C -0.460 4.460 22 H 0.086 0.914 23 C -0.241 4.241 24 N -0.586 5.586 25 Si 0.907 3.093 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.248 0.752 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.139 0.861 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.147 0.853 50 H 0.201 0.799 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.801 5.546 -8.957 21.552 hybrid contribution 0.766 -0.881 -0.769 1.397 sum 19.567 4.665 -9.726 22.343 Atomic orbital electron populations 1.21762 0.95534 0.99642 1.03377 1.22058 0.97165 0.98223 0.99965 1.20507 0.89732 0.92825 0.91134 0.92681 1.21713 0.95706 0.82480 1.01220 1.45960 1.06979 1.10994 1.72182 1.20181 0.82743 0.90254 0.76557 1.90684 1.56052 1.46621 1.50263 1.21463 0.94737 0.95690 1.06298 1.22424 0.93472 0.81166 1.02651 1.85993 1.19255 1.30395 1.87316 1.18938 0.82300 0.93988 0.95034 1.21211 0.93889 0.98631 1.09579 1.19690 0.93360 0.95059 0.96308 1.20826 0.98538 0.95667 1.02284 1.20781 0.99447 0.91671 1.06225 1.19657 0.92417 0.95817 0.96816 1.20800 1.01017 0.92724 1.02495 1.20271 0.94605 0.95090 1.07982 1.42461 1.16838 1.67047 1.11254 1.19987 0.92614 1.32353 1.00996 0.91442 1.25715 1.05705 1.00405 0.92287 1.70895 1.08428 1.47343 1.31926 0.83293 0.74317 0.75884 0.75830 1.21124 1.22279 1.22285 0.94075 0.94850 0.89601 0.93771 0.92698 0.91868 0.91679 0.75160 0.87772 0.87428 0.91057 0.91150 0.85182 0.90891 0.91350 0.91391 0.86119 0.90896 0.91386 0.91302 0.85257 0.79893 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.15 0.34 -2.26 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.17 3.04 2.59 -67.93 -0.18 2.87 16 4 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 5 C 0.11 1.85 5.23 -4.04 -0.02 1.83 16 6 N -0.71 -11.11 5.39 -60.29 -0.32 -11.43 16 7 C 0.52 7.91 7.83 -10.99 -0.09 7.82 16 8 O -0.56 -10.04 15.98 5.55 0.09 -9.95 16 9 C -0.14 -1.75 6.07 -27.88 -0.17 -1.92 16 10 C 0.08 0.97 4.03 37.16 0.15 1.12 16 11 O -0.32 -4.12 10.14 -19.44 -0.20 -4.32 16 12 C 0.14 1.78 6.69 -39.22 -0.26 1.52 16 13 C -0.21 -2.49 8.69 -39.43 -0.34 -2.83 16 14 C -0.04 -0.45 5.88 -104.65 -0.62 -1.06 16 15 C -0.12 -0.89 10.01 36.00 0.36 -0.53 16 16 C -0.16 -1.54 9.35 -39.56 -0.37 -1.91 16 17 C -0.05 -0.45 5.88 -104.65 -0.62 -1.07 16 18 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 19 C -0.16 -1.79 9.64 -39.44 -0.38 -2.17 16 20 N -0.73 -16.23 4.50 -53.43 -0.24 -16.47 16 21 C -0.33 -8.27 7.75 -15.06 -0.12 -8.39 16 22 H 0.07 1.69 7.32 -52.48 -0.38 1.30 16 23 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 24 N -0.94 -27.50 13.70 55.49 0.76 -26.74 16 25 Si 1.08 24.65 29.92 -169.99 -5.09 19.57 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.30 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.82 5.99 -51.93 -0.31 1.51 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.41 6.52 8.14 -40.82 -0.33 6.19 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.07 0.92 7.61 -51.92 -0.39 0.52 16 40 H 0.07 0.86 7.63 -51.93 -0.40 0.47 16 41 H 0.13 1.46 6.30 -52.49 -0.33 1.13 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 44 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 48 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 49 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 50 H 0.37 8.70 6.63 -40.82 -0.27 8.43 16 51 H 0.26 7.36 6.77 -40.82 -0.28 7.09 16 LS Contribution 415.24 15.07 6.26 6.26 Total: -1.00 -30.45 415.24 -9.60 -40.04 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -8.66 Total: 14.09 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.19 Total: -11.04 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.19 Total: -54.64 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.11 Total: -14.27 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.57 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.45 -9.60 -40.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665799451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.887 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds