Wall clock time and date at job start Sat Apr 11 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 H 1.08999 * 109.46888 * 55.00148 * 3 2 1 5 5 C 1.53003 * 109.47014 * 174.99394 * 3 2 1 6 6 N 1.46499 * 109.46708 * 174.99880 * 5 3 2 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 6 5 10 10 C 1.53003 * 109.46624 * 180.02562 * 9 7 6 11 11 O 1.42907 * 109.46739 * 179.97438 * 10 9 7 12 12 C 1.35904 * 116.99858 * 179.97438 * 11 10 9 13 13 C 1.38732 * 120.05922 * 269.73252 * 12 11 10 14 14 C 1.50698 * 120.02567 * 359.97438 * 13 12 11 15 15 C 1.38140 * 119.94205 * 179.70140 * 13 12 11 16 16 C 1.38265 * 120.05847 * 0.59146 * 15 13 12 17 17 C 1.38267 * 120.11074 * 359.67995 * 16 15 13 18 18 C 1.38148 * 120.05302 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.02652 * 179.97438 * 18 17 16 20 20 N 1.46491 * 109.46969 * 294.99999 * 3 2 1 21 21 C 1.36933 * 120.00454 * 85.00177 * 20 3 2 22 22 H 1.07995 * 119.99809 * 359.97438 * 21 20 3 23 23 C 1.38811 * 120.00487 * 179.97438 * 21 20 3 24 24 N 1.31621 * 119.99700 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00344 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46960 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47267 * 120.00218 * 25 23 21 28 28 H 1.48507 * 109.47196 * 240.00326 * 25 23 21 29 29 H 1.08997 * 109.47100 * 300.00763 * 1 2 3 30 30 H 1.09002 * 109.46547 * 59.99936 * 1 2 3 31 31 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47597 * 239.99813 * 2 1 3 33 33 H 1.09005 * 109.47041 * 119.99967 * 2 1 3 34 34 H 1.08998 * 109.46692 * 55.00382 * 5 3 2 35 35 H 1.08994 * 109.47584 * 295.00246 * 5 3 2 36 36 H 0.97005 * 120.00261 * 0.02562 * 6 5 3 37 37 H 1.09001 * 109.46809 * 299.99238 * 9 7 6 38 38 H 1.08993 * 109.47525 * 59.99679 * 9 7 6 39 39 H 1.09001 * 109.46782 * 299.99104 * 10 9 7 40 40 H 1.08993 * 109.47555 * 59.99547 * 10 9 7 41 41 H 1.08998 * 109.47149 * 90.00156 * 14 13 12 42 42 H 1.09005 * 109.47233 * 210.00516 * 14 13 12 43 43 H 1.09001 * 109.47054 * 330.00112 * 14 13 12 44 44 H 1.08007 * 119.97034 * 180.27331 * 15 13 12 45 45 H 1.08003 * 119.94975 * 179.70159 * 16 15 13 46 46 H 1.07993 * 119.97390 * 180.02562 * 17 16 15 47 47 H 1.08999 * 109.47234 * 270.02749 * 19 18 17 48 48 H 1.09009 * 109.47181 * 30.02281 * 19 18 17 49 49 H 1.09004 * 109.47103 * 150.02359 * 19 18 17 50 50 H 0.97006 * 119.99804 * 264.99213 * 20 3 2 51 51 H 0.97005 * 120.00067 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1259 6 7 4.0631 2.8166 0.0061 7 6 5.3859 3.0628 0.0860 8 8 6.1636 2.1479 0.2567 9 6 5.8989 4.4738 -0.0433 10 6 7.4237 4.4756 0.0826 11 8 7.9103 5.8136 -0.0406 12 6 9.2545 5.9920 0.0493 13 6 9.8424 6.2341 1.2823 14 6 8.9908 6.3001 2.5239 15 6 11.2098 6.4089 1.3718 16 6 11.9909 6.3550 0.2322 17 6 11.4067 6.1195 -0.9986 18 6 10.0405 5.9380 -1.0926 19 6 9.4043 5.6819 -2.4346 20 7 1.6525 2.0974 -1.2517 21 6 0.4158 2.6735 -1.3688 22 1 -0.2741 2.6447 -0.5385 23 6 0.0488 3.2946 -2.5548 24 7 0.8894 3.3293 -3.5670 25 14 -1.6385 4.0798 -2.7147 26 1 -2.3887 3.9038 -1.4452 27 1 -1.4851 5.5285 -3.0029 28 1 -2.3835 3.4307 -3.8233 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.9954 0.8310 -0.6657 35 1 3.8499 1.0376 1.0961 36 1 3.4411 3.5483 -0.1308 37 1 5.6145 4.8760 -1.0157 38 1 5.4681 5.0908 0.7452 39 1 7.7084 4.0732 1.0548 40 1 7.8542 3.8587 -0.7061 41 1 8.9099 5.3054 2.9623 42 1 9.4495 6.9782 3.2435 43 1 7.9970 6.6644 2.2638 44 1 11.6685 6.5930 2.3322 45 1 13.0592 6.4968 0.3036 46 1 12.0190 6.0775 -1.8873 47 1 9.1262 6.6314 -2.8919 48 1 10.1129 5.1618 -3.0793 49 1 8.5138 5.0672 -2.3031 50 1 2.2721 2.1231 -1.9977 51 1 0.6331 3.7636 -4.3956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714077913.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:21 Heat of formation + Delta-G solvation = -63.433968 kcal Electronic energy + Delta-G solvation = -28410.205286 eV Core-core repulsion = 24502.259854 eV Total energy + Delta-G solvation = -3907.945432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43603 -39.44835 -37.49609 -36.71278 -33.78749 -33.73276 -32.47690 -32.16834 -30.90343 -29.76829 -28.03081 -27.11360 -26.84005 -24.46628 -23.36746 -22.26883 -21.85169 -21.08995 -20.23844 -19.67444 -18.06689 -17.32450 -16.79665 -16.42920 -15.83844 -15.59434 -15.52031 -15.06554 -14.96059 -14.24246 -14.17465 -13.90186 -13.60325 -13.48636 -13.32290 -13.18970 -13.17291 -12.98312 -12.87762 -12.71171 -12.28832 -12.11251 -11.96012 -11.91554 -11.71462 -11.46434 -11.25391 -11.17254 -10.99672 -10.92350 -10.76509 -10.45915 -10.21999 -10.02985 -9.90866 -9.66294 -9.56499 -8.99475 -8.80658 -8.68330 -8.67739 -7.07014 -5.84990 -3.14261 0.98756 1.10816 2.86650 3.03292 3.37158 3.43762 3.45795 3.51758 3.97772 4.51382 4.54862 4.60345 4.73526 4.82131 4.96310 5.02953 5.14207 5.17242 5.31295 5.35486 5.38250 5.40709 5.43762 5.47298 5.52980 5.53298 5.60193 5.61237 5.72864 5.77325 5.89164 5.93565 5.94088 5.94691 6.07166 6.13101 6.22696 6.24225 6.37611 6.39706 6.51531 6.54943 6.57930 6.58549 6.85685 6.99347 7.21519 7.43472 7.63927 7.87209 8.32296 8.49605 9.44450 9.99100 10.34967 11.36896 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002205 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.398055 B =12697.962417 C =13613.792035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.516 3.484 8 O -0.558 6.558 9 C -0.141 4.141 10 C 0.086 3.914 11 O -0.334 6.334 12 C 0.098 3.902 13 C -0.099 4.099 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.097 4.097 19 C -0.114 4.114 20 N -0.721 5.721 21 C -0.237 4.237 22 H 0.074 0.926 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.382 4.914 9.261 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.360 5.360 7 C 0.302 3.698 8 O -0.438 6.438 9 C -0.181 4.181 10 C 0.012 3.988 11 O -0.251 6.251 12 C 0.055 3.945 13 C -0.099 4.099 14 C -0.171 4.171 15 C -0.136 4.136 16 C -0.138 4.138 17 C -0.135 4.135 18 C -0.097 4.097 19 C -0.170 4.170 20 N -0.364 5.364 21 C -0.368 4.368 22 H 0.092 0.908 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.734 3.266 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.249 0.751 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.581 4.461 9.375 21.284 hybrid contribution -0.945 0.597 -0.536 1.240 sum 17.635 5.058 8.838 20.364 Atomic orbital electron populations 1.21769 0.95712 0.99645 1.03255 1.22070 0.96984 0.98404 1.00019 1.20566 0.89905 0.92827 0.91451 0.92829 1.21679 0.95650 0.82575 1.01074 1.45953 1.06981 1.10958 1.72104 1.20223 0.82726 0.90324 0.76547 1.90682 1.56096 1.46630 1.50370 1.21462 0.95047 0.95499 1.06077 1.22336 0.93071 0.81529 1.01913 1.85925 1.17941 1.28152 1.93110 1.18302 0.83176 1.01436 0.91612 1.20240 0.94400 1.00444 0.94831 1.20728 0.99847 1.02296 0.94217 1.20919 0.92551 1.01347 0.98734 1.21126 0.99852 1.00299 0.92546 1.20934 0.93669 1.00935 0.97935 1.20276 0.93674 0.99983 0.95805 1.20741 1.00994 1.02458 0.92814 1.42461 1.16797 1.65841 1.11273 1.19242 0.91929 1.27614 0.98005 0.90848 1.24737 0.98067 1.01587 0.96390 1.69669 1.35135 1.48900 1.03991 0.86194 0.84096 0.78888 0.77457 1.20558 1.21904 1.21947 0.94111 0.89670 0.94870 0.92528 0.93863 0.91819 0.91877 0.75121 0.87564 0.88025 0.92131 0.91963 0.91211 0.91492 0.90651 0.85791 0.85895 0.85734 0.90754 0.91539 0.91042 0.78102 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.16 2.92 2.59 -67.93 -0.18 2.74 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.71 -11.21 5.39 -60.30 -0.32 -11.54 16 7 C 0.52 8.04 7.83 -10.98 -0.09 7.96 16 8 O -0.56 -10.34 15.98 5.56 0.09 -10.25 16 9 C -0.14 -1.76 6.07 -27.88 -0.17 -1.93 16 10 C 0.09 1.10 4.98 37.16 0.19 1.28 16 11 O -0.33 -4.27 8.32 -19.44 -0.16 -4.44 16 12 C 0.10 1.20 5.67 -39.22 -0.22 0.98 16 13 C -0.10 -1.07 5.89 -104.48 -0.62 -1.69 16 14 C -0.11 -1.05 9.79 36.00 0.35 -0.70 16 15 C -0.12 -1.09 9.70 -39.61 -0.38 -1.47 16 16 C -0.12 -1.05 10.04 -39.56 -0.40 -1.45 16 17 C -0.12 -1.11 9.70 -39.60 -0.38 -1.49 16 18 C -0.10 -1.09 5.89 -104.47 -0.62 -1.70 16 19 C -0.11 -1.15 9.79 36.01 0.35 -0.80 16 20 N -0.72 -16.01 4.51 -53.43 -0.24 -16.25 16 21 C -0.24 -5.88 7.75 -15.06 -0.12 -6.00 16 22 H 0.07 1.79 7.32 -52.49 -0.38 1.41 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -26.35 13.06 55.49 0.72 -25.63 16 25 Si 0.90 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.76 5.99 -51.93 -0.31 1.45 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.41 6.57 8.14 -40.82 -0.33 6.23 16 37 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.06 0.84 7.21 -51.93 -0.37 0.47 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.57 8.09 -51.92 -0.42 0.15 16 49 H 0.07 0.80 6.33 -51.93 -0.33 0.47 16 50 H 0.38 9.39 7.80 -40.82 -0.32 9.07 16 51 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 415.93 15.07 6.27 6.27 Total: -1.00 -29.60 415.93 -9.62 -39.22 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -8.75 Total: 13.84 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.20 Total: -7.44 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.16 Total: -53.42 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.07 Total: -14.68 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -29.60 -9.62 -39.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714077913.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.210 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds