Wall clock time and date at job start Sat Apr 11 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46909 * 2 1 4 4 H 1.08994 * 109.47698 * 305.00068 * 3 2 1 5 5 C 1.53002 * 109.46954 * 184.99901 * 3 2 1 6 6 O 1.42906 * 109.47212 * 65.00332 * 3 2 1 7 7 C 1.35706 * 116.99755 * 208.65139 * 6 3 2 8 8 C 1.38994 * 119.91575 * 354.36852 * 7 6 3 9 9 C 1.37710 * 120.08967 * 180.02562 * 8 7 6 10 10 C 1.39729 * 119.91186 * 359.97438 * 9 8 7 11 11 C 1.47601 * 120.08742 * 180.02562 * 10 9 8 12 12 O 1.21588 * 119.99704 * 223.00380 * 11 10 9 13 13 N 1.34772 * 120.00370 * 42.99916 * 11 10 9 14 14 C 1.46504 * 119.99923 * 355.41905 * 13 11 10 15 15 C 1.46500 * 120.00114 * 175.42260 * 13 11 10 16 16 H 1.09004 * 109.47268 * 359.97438 * 15 13 11 17 17 C 1.53000 * 109.46900 * 240.00033 * 15 13 11 18 18 C 1.52994 * 109.47030 * 120.00132 * 15 13 11 19 19 N 1.46501 * 109.47330 * 304.99674 * 18 15 13 20 20 C 1.36934 * 120.00455 * 180.02562 * 19 18 15 21 21 H 1.08002 * 119.99638 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00194 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99778 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00182 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47007 * 90.00242 * 24 22 20 26 26 H 1.48498 * 109.47429 * 210.00515 * 24 22 20 27 27 H 1.48502 * 109.47063 * 330.00428 * 24 22 20 28 28 C 1.39737 * 119.82114 * 0.27009 * 10 9 8 29 29 C 1.37704 * 119.91417 * 359.45116 * 28 10 9 30 30 H 1.09000 * 109.47340 * 300.00013 * 1 2 3 31 31 H 1.08998 * 109.47537 * 59.99583 * 1 2 3 32 32 H 1.08998 * 109.47434 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46728 * 240.00279 * 2 1 3 34 34 H 1.09004 * 109.46999 * 119.99983 * 2 1 3 35 35 H 1.09006 * 109.46976 * 59.99973 * 5 3 2 36 36 H 1.08998 * 109.47478 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47007 * 300.00071 * 5 3 2 38 38 H 1.07999 * 119.95418 * 359.97438 * 8 7 6 39 39 H 1.08005 * 120.04128 * 180.02562 * 9 8 7 40 40 H 1.08996 * 109.47178 * 274.36008 * 14 13 11 41 41 H 1.08997 * 109.46530 * 34.35697 * 14 13 11 42 42 H 1.09000 * 109.46773 * 154.35361 * 14 13 11 43 43 H 1.08994 * 109.46986 * 299.99870 * 17 15 13 44 44 H 1.09000 * 109.46738 * 179.97438 * 17 15 13 45 45 H 1.08997 * 109.47102 * 60.00301 * 17 15 13 46 46 H 1.08997 * 109.47585 * 64.99827 * 18 15 13 47 47 H 1.09002 * 109.46907 * 185.00189 * 18 15 13 48 48 H 0.97008 * 119.99533 * 0.02562 * 19 18 15 49 49 H 0.97007 * 119.99755 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.03811 * 179.72472 * 28 10 9 51 51 H 1.07996 * 119.95857 * 180.24811 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0814 1.2211 7 6 1.4779 3.4253 1.1819 8 6 1.7710 4.1316 0.0212 9 6 1.5861 5.4955 -0.0223 10 6 1.1027 6.1694 1.1022 11 6 0.9025 7.6312 1.0597 12 8 1.2458 8.3194 2.0014 13 7 0.3394 8.2030 -0.0230 14 6 0.0179 7.3887 -1.1977 15 6 0.0488 9.6389 -0.0253 16 1 0.3545 10.0730 0.9267 17 6 -1.4526 9.8551 -0.2252 18 6 0.8171 10.3129 -1.1638 19 7 2.2442 10.0059 -1.0389 20 6 3.1344 10.5048 -1.9519 21 1 2.7844 11.1242 -2.7645 22 6 4.4864 10.2135 -1.8338 23 7 5.3421 10.6935 -2.7112 24 14 5.0916 9.1415 -0.4288 25 1 5.0759 7.7177 -0.8503 26 1 6.4770 9.5353 -0.0669 27 1 4.2031 9.3193 0.7477 28 6 0.8141 5.4564 2.2689 29 6 0.9962 4.0919 2.3026 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8532 0.9570 -1.0571 36 1 3.9282 2.4719 -0.1253 37 1 3.9994 0.9053 0.7161 38 1 2.1450 3.6101 -0.8474 39 1 1.8137 6.0435 -0.9248 40 1 0.8968 7.3113 -1.8377 41 1 -0.2868 6.3926 -0.8768 42 1 -0.7955 7.8565 -1.7524 43 1 -1.7586 9.4209 -1.1769 44 1 -1.6688 10.9234 -0.2264 45 1 -1.9999 9.3749 0.5860 46 1 0.4483 9.9425 -2.1203 47 1 0.6717 11.3919 -1.1115 48 1 2.5584 9.4492 -0.3092 49 1 6.2871 10.4902 -2.6284 50 1 0.4445 5.9744 3.1415 51 1 0.7696 3.5396 3.2025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715364839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:05:17 Heat of formation + Delta-G solvation = -32.187430 kcal Electronic energy + Delta-G solvation = -29797.214461 eV Core-core repulsion = 25890.623981 eV Total energy + Delta-G solvation = -3906.590480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76953 -39.83710 -37.67638 -36.40568 -34.58019 -34.11083 -32.22669 -31.25700 -30.64083 -30.30514 -29.56176 -26.88203 -25.91532 -24.63461 -23.60024 -23.20824 -22.16218 -21.38518 -20.54606 -19.25025 -18.52730 -17.53281 -17.34144 -16.48730 -16.05520 -15.53270 -15.16276 -15.10114 -14.72371 -14.44548 -14.25387 -14.07692 -13.92417 -13.70937 -13.60881 -13.30665 -12.88053 -12.83317 -12.67081 -12.60156 -12.44434 -12.40519 -12.23650 -12.16030 -12.03949 -11.82182 -11.72634 -11.48173 -11.27586 -10.92437 -10.92290 -10.79728 -10.73776 -10.51092 -10.06908 -9.63823 -9.56455 -9.17446 -8.87386 -8.42916 -8.27990 -7.19435 -5.74858 -3.09202 0.97173 1.21054 2.86675 2.91571 3.17665 3.40469 3.49625 3.56179 3.68582 4.25682 4.47956 4.57641 4.61878 4.63906 4.65985 4.73741 4.88933 5.05267 5.07905 5.15053 5.18819 5.20559 5.25139 5.31662 5.36188 5.42874 5.48262 5.54048 5.54700 5.56511 5.62531 5.69064 5.78282 5.81372 5.83637 5.88279 5.88674 5.97752 6.00695 6.09072 6.16010 6.23849 6.30797 6.39745 6.52871 6.63882 6.88268 7.19119 7.58517 8.01623 8.37695 8.44956 9.24881 9.98028 10.18572 11.43408 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011521 B = 0.003527 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.781818 B = 7936.947860 C = 9206.404961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.077 3.923 4 H 0.078 0.922 5 C -0.181 4.181 6 O -0.306 6.306 7 C 0.151 3.849 8 C -0.218 4.218 9 C -0.046 4.046 10 C -0.164 4.164 11 C 0.560 3.440 12 O -0.537 6.537 13 N -0.594 5.594 14 C 0.074 3.926 15 C 0.121 3.879 16 H 0.101 0.899 17 C -0.155 4.155 18 C 0.149 3.851 19 N -0.752 5.752 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.008 3.992 23 N -0.934 5.934 24 Si 0.872 3.128 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.271 1.271 28 C -0.028 4.028 29 C -0.162 4.162 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.037 0.963 48 H 0.364 0.636 49 H 0.259 0.741 50 H 0.136 0.864 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.245 -21.233 5.022 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.021 3.979 4 H 0.096 0.904 5 C -0.239 4.239 6 O -0.219 6.219 7 C 0.105 3.895 8 C -0.236 4.236 9 C -0.065 4.065 10 C -0.167 4.167 11 C 0.348 3.652 12 O -0.414 6.414 13 N -0.326 5.326 14 C -0.069 4.069 15 C 0.018 3.982 16 H 0.119 0.881 17 C -0.213 4.213 18 C 0.021 3.979 19 N -0.398 5.398 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.188 4.188 23 N -0.583 5.583 24 Si 0.702 3.298 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.196 1.196 28 C -0.047 4.047 29 C -0.181 4.181 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.197 0.803 49 H 0.069 0.931 50 H 0.154 0.846 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.995 -20.866 5.468 25.713 hybrid contribution 0.838 -0.683 0.551 1.213 sum -13.157 -21.549 6.019 25.956 Atomic orbital electron populations 1.21768 0.95079 1.01903 1.02444 1.21652 0.96868 0.93906 1.03253 1.22594 0.95326 0.93941 0.86023 0.90427 1.22368 0.94904 1.03534 1.03054 1.86068 1.83001 1.17579 1.35275 1.19205 0.93456 0.82694 0.94138 1.21215 1.08742 0.95127 0.98562 1.21454 0.93615 0.93625 0.97783 1.19818 1.07746 0.93488 0.95653 1.18254 0.77267 0.87284 0.82389 1.90790 1.50013 1.63973 1.36657 1.47649 1.60910 1.09002 1.15083 1.22013 1.01542 0.95170 0.88144 1.21487 0.94787 0.79721 1.02167 0.88084 1.22054 0.94987 1.02394 1.01883 1.20982 0.85061 0.97109 0.94774 1.42674 1.02107 1.62145 1.32901 1.19044 0.87685 1.25495 1.04919 0.89214 1.24607 0.95801 1.00354 0.98054 1.69703 1.02195 1.49366 1.36997 0.86707 0.78491 0.80869 0.83753 1.21181 1.21596 1.19635 1.20944 0.94772 0.92560 0.96416 1.20316 1.06008 0.93832 0.97946 0.91970 0.92718 0.92425 0.89995 0.90770 0.90820 0.91543 0.91371 0.84767 0.84266 0.91664 0.91234 0.90772 0.92172 0.91133 0.92545 0.95299 0.94555 0.80294 0.93120 0.84602 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.64 16 2 C -0.12 -0.77 5.64 -26.73 -0.15 -0.92 16 3 C 0.08 0.63 2.20 -26.73 -0.06 0.57 16 4 H 0.08 0.60 6.06 -51.93 -0.31 0.28 16 5 C -0.18 -1.43 9.27 37.16 0.34 -1.09 16 6 O -0.31 -3.24 9.31 -18.82 -0.18 -3.42 16 7 C 0.15 1.78 6.64 -39.02 -0.26 1.52 16 8 C -0.22 -2.59 8.40 -39.49 -0.33 -2.92 16 9 C -0.05 -0.64 7.62 -39.22 -0.30 -0.94 16 10 C -0.16 -2.49 5.11 -104.96 -0.54 -3.03 16 11 C 0.56 10.06 7.00 -12.44 -0.09 9.97 16 12 O -0.54 -11.58 16.30 5.29 0.09 -11.49 16 13 N -0.59 -9.55 2.24 -175.14 -0.39 -9.94 16 14 C 0.07 0.95 8.08 59.85 0.48 1.43 16 15 C 0.12 1.99 2.79 -67.93 -0.19 1.80 16 16 H 0.10 1.88 6.91 -51.93 -0.36 1.53 16 17 C -0.15 -1.86 9.18 37.16 0.34 -1.52 16 18 C 0.15 2.90 5.55 -4.04 -0.02 2.88 16 19 N -0.75 -18.66 5.24 -59.91 -0.31 -18.97 16 20 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 23 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 24 Si 0.87 23.58 27.74 -169.99 -4.71 18.87 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 27 H -0.27 -7.42 6.52 56.52 0.37 -7.05 16 28 C -0.03 -0.37 9.65 -39.22 -0.38 -0.75 16 29 C -0.16 -1.91 9.97 -39.49 -0.39 -2.30 16 30 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.62 7.32 -51.93 -0.38 0.24 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.13 1.33 5.55 -52.49 -0.29 1.04 16 39 H 0.14 1.94 5.69 -52.48 -0.30 1.64 16 40 H 0.06 0.92 6.93 -51.93 -0.36 0.56 16 41 H 0.07 0.76 5.98 -51.93 -0.31 0.44 16 42 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 43 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.03 0.54 7.84 -51.93 -0.41 0.14 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.36 9.35 4.93 -40.82 -0.20 9.15 16 49 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 50 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 51 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -35.55 402.31 -8.35 -43.90 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -8.25 Total: 7.14 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.43 Total: -2.96 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.07 Total: -58.10 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.09 Total: -14.91 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.71 Total: 18.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.55 -8.35 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715364839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.717 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds