Wall clock time and date at job start Sat Apr 11 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00375 * 2 1 4 4 C 1.38725 * 120.05439 * 180.02562 * 3 2 1 5 5 C 1.38151 * 119.94325 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05213 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94159 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47427 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.46771 * 239.99697 * 7 6 5 10 10 C 1.52996 * 109.47281 * 119.99772 * 7 6 5 11 11 C 1.50696 * 109.47060 * 184.99936 * 10 7 6 12 12 O 1.21278 * 120.00115 * 359.97438 * 11 10 7 13 13 N 1.34786 * 120.00179 * 179.97438 * 11 10 7 14 14 C 1.46496 * 119.99884 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46653 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46991 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.46884 * 305.00622 * 16 15 14 18 18 C 1.52997 * 109.47127 * 184.99870 * 16 15 14 19 19 N 1.46497 * 109.46631 * 65.00087 * 16 15 14 20 20 C 1.36945 * 119.99649 * 204.99948 * 19 16 15 21 21 H 1.07997 * 120.00244 * 359.97438 * 20 19 16 22 22 C 1.38812 * 119.99544 * 180.02562 * 20 19 16 23 23 N 1.31625 * 119.99618 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00424 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47074 * 90.00007 * 24 22 20 26 26 H 1.48499 * 109.46948 * 210.00030 * 24 22 20 27 27 H 1.48495 * 109.46973 * 329.99849 * 24 22 20 28 28 C 1.38259 * 120.11266 * 0.26981 * 6 5 4 29 29 C 1.38149 * 120.05602 * 359.45303 * 28 6 5 30 30 H 1.08998 * 109.46860 * 59.99343 * 1 2 3 31 31 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47049 * 299.99665 * 1 2 3 33 33 H 1.07998 * 120.03337 * 359.95763 * 4 3 2 34 34 H 1.07994 * 119.97192 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.46867 * 299.99736 * 9 7 6 36 36 H 1.08998 * 109.47082 * 59.99815 * 9 7 6 37 37 H 1.09002 * 109.46962 * 180.02562 * 9 7 6 38 38 H 1.08997 * 109.47474 * 64.99613 * 10 7 6 39 39 H 1.09000 * 109.47145 * 304.99813 * 10 7 6 40 40 H 0.97002 * 119.99650 * 359.97438 * 13 11 10 41 41 H 1.08996 * 109.47408 * 60.00184 * 14 13 11 42 42 H 1.09006 * 109.47093 * 299.99401 * 14 13 11 43 43 H 1.08996 * 109.46933 * 60.00052 * 15 14 13 44 44 H 1.09000 * 109.47335 * 299.99924 * 15 14 13 45 45 H 1.09002 * 109.47153 * 180.02562 * 18 16 15 46 46 H 1.09001 * 109.46832 * 60.00321 * 18 16 15 47 47 H 1.09004 * 109.47261 * 300.00303 * 18 16 15 48 48 H 0.96996 * 120.00792 * 25.00239 * 19 16 15 49 49 H 0.97001 * 120.00319 * 179.97438 * 23 22 20 50 50 H 1.07999 * 119.97231 * 179.70868 * 28 6 5 51 51 H 1.08004 * 120.03008 * 180.27198 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 3.9863 5.0184 -0.0017 8 1 5.0669 4.8756 -0.0024 9 6 3.5765 5.8006 1.2478 10 6 3.5739 5.7999 -1.2507 11 6 4.3505 7.0897 -1.3153 12 8 5.1543 7.3578 -0.4477 13 7 4.1518 7.9455 -2.3375 14 6 4.9071 9.1991 -2.4006 15 6 4.4955 9.9801 -3.6503 16 6 5.2840 11.2897 -3.7159 17 1 5.1422 11.8460 -2.7894 18 6 4.7847 12.1271 -4.8951 19 7 6.7076 10.9941 -3.8950 20 6 7.6514 11.8971 -3.4838 21 1 7.3463 12.8273 -3.0278 22 6 9.0003 11.6171 -3.6540 23 7 9.9075 12.4848 -3.2582 24 14 9.5281 10.0085 -4.4434 25 1 9.6351 10.1901 -5.9133 26 1 10.8472 9.5989 -3.8979 27 1 8.5218 8.9577 -4.1463 28 6 1.9213 3.6047 0.0062 29 6 1.2916 2.3751 0.0009 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0209 0.3798 -0.0003 34 1 5.1346 2.5748 -0.0019 35 1 2.4959 5.9434 1.2488 36 1 3.8703 5.2438 2.1376 37 1 4.0711 6.7719 1.2467 38 1 2.5072 6.0198 -1.2060 39 1 3.7850 5.2038 -2.1385 40 1 3.5091 7.7310 -3.0317 41 1 5.9737 8.9788 -2.4452 42 1 4.6960 9.7956 -1.5130 43 1 3.4290 10.2004 -3.6061 44 1 4.7069 9.3835 -4.5377 45 1 5.3467 13.0598 -4.9421 46 1 3.7255 12.3470 -4.7618 47 1 4.9265 11.5707 -5.8217 48 1 6.9817 10.1588 -4.3050 49 1 10.8502 12.2891 -3.3768 50 1 1.3345 4.5113 0.0113 51 1 0.2130 2.3201 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492129607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:07:00 Heat of formation + Delta-G solvation = -55.071232 kcal Electronic energy + Delta-G solvation = -27880.797708 eV Core-core repulsion = 23973.214912 eV Total energy + Delta-G solvation = -3907.582796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63204 -39.77567 -38.20747 -36.80037 -34.86868 -34.30712 -32.25319 -31.40549 -30.21353 -29.59430 -28.74534 -27.52619 -27.33663 -24.00163 -23.51693 -22.81297 -22.29363 -20.87769 -20.20409 -19.64798 -18.54920 -17.66649 -17.18897 -16.48243 -16.13554 -15.83187 -15.72805 -15.39548 -15.05133 -14.75342 -14.42093 -14.06171 -13.98199 -13.77482 -13.65988 -13.38941 -13.24055 -12.99760 -12.76276 -12.52279 -12.39057 -12.23874 -12.14386 -11.93106 -11.64653 -11.44492 -11.28690 -11.17108 -11.06275 -11.02185 -10.82564 -10.75795 -10.64798 -10.40377 -10.01472 -9.61268 -9.55235 -9.32627 -8.94421 -8.85917 -8.40650 -7.25065 -5.73893 -3.09458 1.01734 1.08643 2.73024 2.88477 3.24182 3.40123 3.42494 3.45345 3.48287 4.37955 4.46812 4.52400 4.60912 4.62022 4.69746 4.74696 4.88041 4.97687 5.01052 5.05958 5.12870 5.15949 5.20738 5.30352 5.32597 5.44391 5.49385 5.56025 5.59751 5.64489 5.70125 5.83859 5.93599 5.96365 5.99474 6.05368 6.07584 6.23604 6.26468 6.29313 6.38100 6.40343 6.45216 6.50297 6.62847 6.78386 6.97708 7.01897 7.58805 8.02019 8.33580 8.45001 9.23289 9.95876 10.14971 11.44513 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.001924 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.632647 B =14549.263913 C =15159.090644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.149 4.149 5 C -0.075 4.075 6 C -0.109 4.109 7 C -0.032 4.032 8 H 0.087 0.913 9 C -0.149 4.149 10 C -0.133 4.133 11 C 0.507 3.493 12 O -0.533 6.533 13 N -0.732 5.732 14 C 0.120 3.880 15 C -0.135 4.135 16 C 0.179 3.821 17 H 0.058 0.942 18 C -0.164 4.164 19 N -0.748 5.748 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.883 3.117 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.075 4.075 29 C -0.206 4.206 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.396 0.604 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.044 0.956 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.124 0.876 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.442 -23.301 4.809 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.168 4.168 5 C -0.093 4.093 6 C -0.110 4.110 7 C -0.051 4.051 8 H 0.106 0.894 9 C -0.206 4.206 10 C -0.173 4.173 11 C 0.293 3.707 12 O -0.409 6.409 13 N -0.384 5.384 14 C -0.003 4.003 15 C -0.174 4.174 16 C 0.069 3.931 17 H 0.076 0.924 18 C -0.224 4.224 19 N -0.391 5.391 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.714 3.286 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.093 4.093 29 C -0.225 4.225 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.229 0.771 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.142 0.858 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.641 -23.079 5.556 32.805 hybrid contribution -0.111 -1.097 -1.058 1.528 sum -22.753 -24.176 4.498 33.502 Atomic orbital electron populations 1.23045 0.78427 1.03907 1.01360 1.86065 1.21361 1.27096 1.88848 1.19044 0.92402 0.84108 0.97048 1.20432 0.91356 0.98684 1.06322 1.20956 1.00046 0.90892 0.97428 1.19839 0.93516 0.94956 1.02665 1.19817 1.00550 0.90345 0.94357 0.89436 1.21974 1.00725 1.01715 0.96222 1.21763 1.00914 0.94370 1.00296 1.20618 0.83227 0.85282 0.81592 1.90710 1.35565 1.76412 1.38245 1.46173 1.44013 1.21614 1.26565 1.21442 0.97036 0.83319 0.98486 1.22105 1.00111 0.98149 0.97055 1.20127 0.84144 0.92016 0.96773 0.92425 1.22394 0.98781 1.01484 0.99714 1.42818 1.00811 1.21126 1.74361 1.19062 0.86071 0.99153 1.32880 0.89184 1.24662 0.95686 0.97645 1.01104 1.69699 1.00267 1.35519 1.52679 0.86565 0.77959 0.84791 0.79285 1.21241 1.21780 1.20375 1.20795 0.94042 0.96926 0.97496 1.21212 0.99920 0.92353 1.09008 0.92652 0.88284 0.92664 0.85250 0.85155 0.93325 0.92766 0.90058 0.89051 0.88928 0.77086 0.90343 0.91473 0.91494 0.91804 0.92233 0.94242 0.93653 0.80719 0.93110 0.85777 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.77 10.50 -19.42 -0.20 -2.97 16 3 C 0.12 1.08 6.69 -39.22 -0.26 0.82 16 4 C -0.15 -1.35 9.99 -39.43 -0.39 -1.74 16 5 C -0.08 -0.67 9.66 -39.60 -0.38 -1.05 16 6 C -0.11 -0.98 4.78 -104.60 -0.50 -1.48 16 7 C -0.03 -0.31 2.21 -91.77 -0.20 -0.52 16 8 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 9 C -0.15 -1.55 8.74 37.16 0.32 -1.22 16 10 C -0.13 -1.21 4.92 -27.89 -0.14 -1.35 16 11 C 0.51 6.64 7.55 -10.98 -0.08 6.56 16 12 O -0.53 -9.32 13.96 5.56 0.08 -9.24 16 13 N -0.73 -8.82 5.56 -60.29 -0.33 -9.15 16 14 C 0.12 1.85 5.56 -4.04 -0.02 1.83 16 15 C -0.14 -1.89 4.87 -26.73 -0.13 -2.02 16 16 C 0.18 3.25 2.89 -67.93 -0.20 3.05 16 17 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 18 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 19 N -0.75 -17.19 4.38 -53.43 -0.23 -17.42 16 20 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 24 Si 0.88 22.47 27.74 -169.99 -4.71 17.75 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 27 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 28 C -0.07 -0.60 8.75 -39.61 -0.35 -0.95 16 29 C -0.21 -1.63 9.04 -39.43 -0.36 -1.99 16 30 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.01 7.94 -52.49 -0.42 0.59 16 35 H 0.05 0.43 7.37 -51.93 -0.38 0.04 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 38 H 0.09 0.63 7.58 -51.93 -0.39 0.24 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 3.40 8.47 -40.82 -0.35 3.06 16 41 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 50 H 0.12 0.80 7.15 -52.49 -0.38 0.43 16 51 H 0.13 0.73 6.30 -52.48 -0.33 0.40 16 LS Contribution 410.67 15.07 6.19 6.19 Total: -1.00 -34.72 410.67 -8.66 -43.38 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -8.62 Total: 8.46 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.60 Total: -8.17 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.21 Total: -55.39 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.13 Total: -12.22 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.72 -8.66 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492129607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.687 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds