Wall clock time and date at job start Sat Apr 11 2020 04:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99940 * 2 1 4 4 C 1.38760 * 120.05430 * 0.24720 * 3 2 1 5 5 C 1.38119 * 119.94197 * 180.32015 * 4 3 2 6 6 C 1.38285 * 120.05766 * 359.67890 * 5 4 3 7 7 C 1.38247 * 120.11146 * 0.02960 * 6 5 4 8 8 C 1.38165 * 120.05308 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02373 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47043 * 299.99111 * 9 8 7 12 12 C 1.52997 * 109.47721 * 59.99577 * 9 8 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 12 9 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 9 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 9 16 16 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 18 18 C 1.53006 * 109.46992 * 90.00440 * 17 15 13 19 19 C 1.52997 * 109.46977 * 179.97438 * 18 17 15 20 20 N 1.46502 * 109.47219 * 179.97438 * 19 18 17 21 21 C 1.36936 * 120.00280 * 179.97438 * 20 19 18 22 22 H 1.08006 * 120.00216 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99948 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00019 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47190 * 89.99691 * 25 23 21 27 27 H 1.48498 * 109.47085 * 210.00176 * 25 23 21 28 28 H 1.48506 * 109.47016 * 330.00186 * 25 23 21 29 29 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47279 * 299.99942 * 1 2 3 31 31 H 1.09002 * 109.46964 * 60.00598 * 1 2 3 32 32 H 1.07997 * 120.02787 * 0.03138 * 4 3 2 33 33 H 1.08003 * 119.97437 * 179.71069 * 5 4 3 34 34 H 1.08007 * 119.94656 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.96964 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47271 * 300.01083 * 11 9 8 37 37 H 1.09008 * 109.46731 * 60.00465 * 11 9 8 38 38 H 1.08998 * 109.47430 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47153 * 54.99889 * 12 9 8 40 40 H 1.09001 * 109.46832 * 295.00079 * 12 9 8 41 41 H 1.08995 * 109.47620 * 89.99771 * 16 15 13 42 42 H 1.09006 * 109.47028 * 209.99878 * 16 15 13 43 43 H 1.09002 * 109.47109 * 329.99455 * 16 15 13 44 44 H 1.09000 * 109.47018 * 209.99971 * 17 15 13 45 45 H 1.09000 * 109.47828 * 330.00266 * 17 15 13 46 46 H 1.09000 * 109.46856 * 299.99630 * 18 17 15 47 47 H 1.09002 * 109.47088 * 59.99836 * 18 17 15 48 48 H 1.08998 * 109.47532 * 300.00118 * 19 18 17 49 49 H 1.09000 * 109.47620 * 59.99963 * 19 18 17 50 50 H 0.96997 * 119.99904 * 0.02562 * 20 19 18 51 51 H 0.96996 * 120.00318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3754 0.0052 5 6 1.9207 3.6048 -0.0015 6 6 3.3017 3.6759 -0.0067 7 6 4.0559 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0002 9 6 4.2537 0.0223 0.0002 10 1 3.5910 -0.8431 0.0054 11 6 5.1318 -0.0146 -1.2522 12 6 5.1411 -0.0080 1.2462 13 6 5.8721 -1.3242 1.3105 14 8 5.7006 -2.1560 0.4447 15 7 6.7171 -1.5767 2.3297 16 6 6.9247 -0.5718 3.3751 17 6 7.4281 -2.8560 2.3918 18 6 8.7624 -2.7344 1.6528 19 6 9.5052 -4.0703 1.7183 20 7 10.7825 -3.9541 1.0102 21 6 11.6249 -5.0311 0.9362 22 1 11.3475 -5.9665 1.3994 23 6 12.8353 -4.9208 0.2658 24 7 13.1736 -3.7807 -0.2983 25 14 13.9841 -6.3902 0.1641 26 1 13.6672 -7.1832 -1.0508 27 1 15.3895 -5.9159 0.0931 28 1 13.8087 -7.2400 1.3694 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2128 2.3204 0.0097 33 1 1.3338 4.5114 -0.0022 34 1 3.7921 4.6382 -0.0115 35 1 5.1342 2.5754 -0.0102 36 1 4.4997 0.0070 -2.1399 37 1 5.7945 0.8508 -1.2570 38 1 5.7265 -0.9280 -1.2522 39 1 4.5221 0.1077 2.1360 40 1 5.8634 0.8069 1.1977 41 1 6.2020 -0.7263 4.1763 42 1 7.9348 -0.6656 3.7739 43 1 6.7917 0.4244 2.9531 44 1 7.6124 -3.1191 3.4334 45 1 6.8225 -3.6315 1.9229 46 1 8.5781 -2.4713 0.6112 47 1 9.3681 -1.9589 2.1218 48 1 9.6895 -4.3330 2.7600 49 1 8.8998 -4.8461 1.2496 50 1 11.0319 -3.1139 0.5945 51 1 14.0193 -3.7037 -0.7671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498641663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:16 Heat of formation + Delta-G solvation = -45.590146 kcal Electronic energy + Delta-G solvation = -28416.136785 eV Core-core repulsion = 24508.965120 eV Total energy + Delta-G solvation = -3907.171666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.76490 -39.85722 -37.83053 -36.33178 -35.07235 -34.75711 -32.26210 -30.51964 -30.38125 -29.70054 -27.92274 -27.52522 -26.86885 -25.02584 -23.82487 -22.65559 -22.34068 -20.95724 -20.41025 -18.90424 -18.39228 -17.22457 -16.99808 -16.59833 -16.10576 -15.97085 -15.71598 -15.56451 -14.75313 -14.60484 -14.46491 -14.32824 -13.82154 -13.73780 -13.59953 -13.20431 -13.07289 -12.98493 -12.84886 -12.59884 -12.52330 -12.31649 -12.05194 -11.93388 -11.87319 -11.59580 -11.45030 -11.26273 -10.88363 -10.86044 -10.80856 -10.75419 -10.66755 -10.32958 -10.03117 -9.68507 -9.56128 -9.14210 -8.81379 -8.57719 -8.43351 -6.85771 -5.70669 -2.99115 1.00445 1.14210 2.70834 2.96802 3.03631 3.45504 3.47858 3.52386 3.54294 4.30781 4.46010 4.54781 4.64842 4.73737 4.78254 4.79919 4.85325 4.91559 5.01580 5.07101 5.09953 5.14199 5.23089 5.28106 5.33956 5.37931 5.49162 5.52672 5.58669 5.62228 5.64370 5.75214 5.77083 5.92591 5.99077 6.01160 6.07763 6.16334 6.20806 6.36510 6.38525 6.42355 6.46281 6.47863 6.62964 6.93052 6.95652 7.08643 7.42901 7.75278 8.26941 8.48411 9.59095 10.18236 10.52912 11.52486 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.001888 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.899203 B =14828.003019 C =14980.080701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.130 3.870 4 C -0.209 4.209 5 C -0.087 4.087 6 C -0.155 4.155 7 C -0.078 4.078 8 C -0.104 4.104 9 C -0.030 4.030 10 H 0.094 0.906 11 C -0.149 4.149 12 C -0.130 4.130 13 C 0.511 3.489 14 O -0.530 6.530 15 N -0.618 5.618 16 C 0.077 3.923 17 C 0.119 3.881 18 C -0.138 4.138 19 C 0.156 3.844 20 N -0.733 5.733 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.020 0.980 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.945 17.636 5.469 33.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.085 3.915 4 C -0.227 4.227 5 C -0.105 4.105 6 C -0.174 4.174 7 C -0.096 4.096 8 C -0.105 4.105 9 C -0.049 4.049 10 H 0.112 0.888 11 C -0.206 4.206 12 C -0.170 4.170 13 C 0.300 3.700 14 O -0.406 6.406 15 N -0.351 5.351 16 C -0.066 4.066 17 C -0.004 4.004 18 C -0.177 4.177 19 C 0.028 3.972 20 N -0.377 5.377 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.213 4.213 24 N -0.584 5.584 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.035 0.965 49 H 0.038 0.962 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -27.888 16.819 5.046 32.956 hybrid contribution 0.526 -0.127 -0.105 0.552 sum -27.362 16.692 4.941 32.430 Atomic orbital electron populations 1.23062 0.78522 1.04061 1.01142 1.86122 1.21160 1.26681 1.88516 1.18865 0.91834 0.84262 0.96583 1.21214 0.99915 0.92407 1.09190 1.20912 0.94742 0.96853 0.97988 1.21058 0.93890 0.98422 1.03997 1.20910 1.00100 0.91008 0.97557 1.19300 0.90328 0.95831 1.05011 1.19728 0.95737 0.95067 0.94343 0.88804 1.21969 0.99386 1.03141 0.96073 1.21774 0.99234 0.95839 1.00116 1.20625 0.79172 0.89171 0.81068 1.90694 1.64194 1.48110 1.37587 1.47934 1.44200 1.17961 1.25024 1.21802 1.02370 0.91705 0.90761 1.21475 0.93264 0.84790 1.00876 1.22045 0.95016 0.99511 1.01106 1.20545 0.87782 0.93605 0.95271 1.42355 1.16990 1.13491 1.64900 1.19255 0.97648 0.91600 1.28359 0.91155 1.24757 0.98290 0.97189 1.01024 1.69665 1.23669 1.24087 1.40943 0.86167 0.80304 0.81878 0.77720 1.21722 1.21799 1.20776 0.88158 0.92752 0.92736 0.85626 0.85999 0.85910 0.85298 0.92897 0.93208 0.89976 0.89155 0.88943 0.92714 0.90653 0.91149 0.90690 0.89802 0.91587 0.92108 0.96455 0.96220 0.78336 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.15 9.26 -19.44 -0.18 -3.33 16 3 C 0.13 1.29 6.66 -39.22 -0.26 1.03 16 4 C -0.21 -1.68 9.04 -39.43 -0.36 -2.04 16 5 C -0.09 -0.64 10.04 -39.61 -0.40 -1.03 16 6 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 7 C -0.08 -0.66 8.76 -39.60 -0.35 -1.01 16 8 C -0.10 -1.04 4.79 -104.48 -0.50 -1.54 16 9 C -0.03 -0.34 2.17 -91.77 -0.20 -0.54 16 10 H 0.09 1.25 6.81 -51.92 -0.35 0.89 16 11 C -0.15 -1.79 8.75 37.16 0.33 -1.47 16 12 C -0.13 -1.31 3.47 -27.88 -0.10 -1.40 16 13 C 0.51 6.94 7.39 -10.98 -0.08 6.86 16 14 O -0.53 -9.23 13.54 5.56 0.08 -9.15 16 15 N -0.62 -7.64 2.87 -181.58 -0.52 -8.16 16 16 C 0.08 0.65 10.24 59.84 0.61 1.26 16 17 C 0.12 1.68 5.41 -4.04 -0.02 1.66 16 18 C -0.14 -2.41 5.65 -26.73 -0.15 -2.56 16 19 C 0.16 3.33 6.26 -4.04 -0.03 3.30 16 20 N -0.73 -19.71 5.60 -59.91 -0.34 -20.05 16 21 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 22 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 23 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 24 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 25 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 31 H 0.05 0.27 7.67 -51.93 -0.40 -0.13 16 32 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 33 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.13 0.93 7.16 -52.49 -0.38 0.55 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.53 7.39 -51.92 -0.38 0.14 16 38 H 0.08 1.21 5.95 -51.93 -0.31 0.90 16 39 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.09 0.77 6.83 -51.93 -0.35 0.42 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 44 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 45 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.38 10.80 7.67 -40.82 -0.31 10.49 16 51 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 409.99 15.07 6.18 6.18 Total: -1.00 -35.63 409.99 -8.78 -44.41 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.55 Total: 6.17 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.15 Total: -5.61 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.13 Total: -56.73 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.10 Total: -12.48 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.63 -8.78 -44.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498641663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.183 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds