Wall clock time and date at job start Sat Apr 11 2020 04:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47578 * 2 1 4 4 C 1.50707 * 109.46818 * 119.99715 * 2 1 3 5 5 C 1.38263 * 119.94085 * 120.00305 * 4 2 1 6 6 C 1.38147 * 120.05498 * 180.02562 * 5 4 2 7 7 C 1.38734 * 119.94251 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.05688 * 180.02562 * 7 6 5 9 9 C 1.42896 * 117.00080 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47216 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00109 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00137 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99873 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46684 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47317 * 55.00694 * 14 13 12 16 16 C 1.53002 * 109.47645 * 294.99878 * 14 13 12 17 17 C 1.53009 * 109.46984 * 175.00142 * 14 13 12 18 18 N 1.46497 * 109.47274 * 185.00013 * 17 14 13 19 19 C 1.36930 * 120.00042 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00049 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00023 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46890 * 60.00006 * 23 21 19 25 25 H 1.48496 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47071 * 300.00316 * 23 21 19 27 27 C 1.38733 * 119.89061 * 0.27664 * 7 6 5 28 28 C 1.38145 * 119.94140 * 359.46767 * 27 7 6 29 29 H 1.08999 * 109.47177 * 300.00599 * 1 2 3 30 30 H 1.09006 * 109.46683 * 59.99751 * 1 2 3 31 31 H 1.08994 * 109.47072 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47631 * 239.99683 * 2 1 3 33 33 H 1.08992 * 109.47308 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.46858 * 300.00135 * 3 2 1 35 35 H 1.08999 * 109.46898 * 59.99235 * 3 2 1 36 36 H 1.07993 * 119.97811 * 359.97030 * 5 4 2 37 37 H 1.07998 * 120.03070 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47251 * 59.99775 * 9 8 7 39 39 H 1.09000 * 109.47075 * 299.99668 * 9 8 7 40 40 H 0.96995 * 120.00018 * 0.27749 * 12 10 9 41 41 H 1.09000 * 109.47212 * 300.00355 * 13 12 10 42 42 H 1.09001 * 109.46577 * 60.00430 * 13 12 10 43 43 H 1.08993 * 109.47092 * 300.00720 * 16 14 13 44 44 H 1.09006 * 109.46455 * 60.00000 * 16 14 13 45 45 H 1.08998 * 109.47381 * 179.97438 * 16 14 13 46 46 H 1.09003 * 109.46685 * 305.00467 * 17 14 13 47 47 H 1.08996 * 109.46802 * 64.99886 * 17 14 13 48 48 H 0.97004 * 120.00110 * 0.02562 * 18 17 14 49 49 H 0.96998 * 120.00541 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.03338 * 179.72593 * 27 7 6 51 51 H 1.08000 * 119.97760 * 180.23008 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.8271 -1.8344 1.1024 6 6 3.2884 -2.4878 2.2288 7 6 2.9539 -2.0148 3.4894 8 8 3.4068 -2.6554 4.5991 9 6 3.0223 -2.1127 5.8639 10 6 3.6128 -2.9488 6.9698 11 8 4.2954 -3.9148 6.7013 12 7 3.3825 -2.6233 8.2572 13 6 3.9562 -3.4366 9.3323 14 6 3.5446 -2.8554 10.6864 15 1 2.4584 -2.7770 10.7331 16 6 4.1639 -1.4666 10.8550 17 6 4.0382 -3.7733 11.8066 18 7 3.5429 -3.2817 13.0947 19 6 3.8586 -3.9475 14.2489 20 1 4.4731 -4.8348 14.2096 21 6 3.3889 -3.4821 15.4694 22 7 2.6396 -2.4010 15.5172 23 14 3.8189 -4.3908 17.0438 24 1 5.2940 -4.4165 17.2133 25 1 3.2002 -3.6958 18.2012 26 1 3.3050 -5.7820 16.9686 27 6 2.1519 -0.8897 3.6153 28 6 1.6975 -0.2369 2.4858 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.0869 -2.2026 0.1209 37 1 3.9089 -3.3659 2.1282 38 1 1.9354 -2.1175 5.9460 39 1 3.3884 -1.0893 5.9466 40 1 2.8333 -1.8532 8.4719 41 1 3.5890 -4.4596 9.2495 42 1 5.0431 -3.4329 9.2501 43 1 5.2501 -1.5450 10.8082 44 1 3.8122 -0.8127 10.0569 45 1 3.8703 -1.0524 11.8195 46 1 3.6686 -4.7846 11.6371 47 1 5.1281 -3.7817 11.8157 48 1 2.9907 -2.4850 13.1300 49 1 2.3116 -2.0755 16.3700 50 1 1.8864 -0.5222 4.5955 51 1 1.0762 0.6411 2.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753622741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:02 Heat of formation + Delta-G solvation = -58.454190 kcal Electronic energy + Delta-G solvation = -27146.588722 eV Core-core repulsion = 23238.859230 eV Total energy + Delta-G solvation = -3907.729492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.76854 -39.72624 -38.29462 -36.82407 -35.14757 -34.43498 -32.61235 -31.44533 -30.39053 -29.75745 -28.38178 -27.57344 -26.35844 -25.14477 -23.71889 -22.97472 -22.29574 -20.76033 -20.43796 -19.89801 -18.70015 -17.62974 -16.92340 -16.69527 -16.44409 -15.88199 -15.73268 -15.21865 -14.79795 -14.74930 -14.47877 -14.28172 -13.96995 -13.88627 -13.70159 -13.64479 -13.35250 -13.08767 -12.90063 -12.76504 -12.68312 -12.50291 -12.30047 -12.08189 -11.71007 -11.61571 -11.21252 -11.17611 -11.09320 -10.99896 -10.92925 -10.73598 -10.60980 -10.46799 -10.13821 -9.93398 -9.68595 -9.35964 -9.16083 -8.88955 -8.41775 -6.94427 -5.78702 -3.07215 0.98285 1.06101 2.31914 2.40434 3.38456 3.43767 3.44158 3.48161 3.49308 4.25471 4.29084 4.40716 4.49311 4.57738 4.64126 4.66541 4.68191 4.76471 4.96892 4.98595 4.99779 5.11488 5.16527 5.18478 5.26272 5.33068 5.39249 5.42824 5.53192 5.56014 5.66411 5.75726 5.77351 5.79615 5.90792 5.92631 5.94039 6.01371 6.05636 6.18366 6.28851 6.32368 6.37561 6.41306 6.61500 6.73725 6.83017 7.01216 7.32311 7.68663 8.02649 8.40373 9.51716 10.08562 10.43378 11.44181 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031803 B = 0.001436 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.199497 B =19490.731666 C =20026.798572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.078 4.078 6 C -0.146 4.146 7 C 0.127 3.873 8 O -0.289 6.289 9 C 0.041 3.959 10 C 0.513 3.487 11 O -0.519 6.519 12 N -0.721 5.721 13 C 0.128 3.872 14 C -0.110 4.110 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.160 3.840 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.208 4.208 28 C -0.074 4.074 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.402 0.598 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.021 0.979 47 H 0.023 0.977 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.128 0.872 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 8.532 -32.933 34.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.164 4.164 7 C 0.081 3.919 8 O -0.201 6.201 9 C -0.038 4.038 10 C 0.297 3.703 11 O -0.394 6.394 12 N -0.374 5.374 13 C 0.005 3.995 14 C -0.130 4.130 15 H 0.096 0.904 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.227 4.227 28 C -0.092 4.092 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.236 0.764 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.041 0.959 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.146 0.854 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.053 7.524 -32.979 33.963 hybrid contribution -0.401 0.370 1.264 1.377 sum -3.454 7.894 -31.714 32.864 Atomic orbital electron populations 1.21872 0.94427 1.02051 1.01883 1.20060 0.95850 0.95935 0.95244 1.21872 1.01287 0.95189 1.01882 1.19777 1.00236 0.96983 0.94706 1.20873 0.96294 0.94503 0.97909 1.20450 1.04179 1.02477 0.89318 1.19073 0.94121 0.91841 0.86848 1.86166 1.70239 1.52059 1.11679 1.22487 1.00890 0.97892 0.82491 1.19955 0.81472 0.85491 0.83430 1.90764 1.37752 1.27642 1.83200 1.45899 1.53811 1.32649 1.05062 1.21470 0.98745 0.94496 0.84810 1.21564 1.01244 0.96804 0.93352 0.90442 1.21799 1.00760 0.95414 1.01956 1.20576 0.96533 0.94488 0.85201 1.42317 1.61910 1.32716 1.00562 1.19199 1.26061 1.06893 0.85018 0.91187 1.24727 1.00468 0.98042 0.97672 1.69641 1.39484 1.24290 1.24931 0.86255 0.77842 0.78909 0.83111 1.21253 1.21685 1.21247 1.21259 1.03413 0.98003 0.99980 1.20747 0.98253 0.98865 0.91314 0.92495 0.92436 0.92496 0.90547 0.92502 0.92438 0.92497 0.85411 0.84979 0.88924 0.88930 0.76376 0.91107 0.91077 0.92748 0.93943 0.91073 0.96080 0.95943 0.78215 0.93480 0.85383 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.01 37.16 0.33 -0.37 16 2 C -0.05 -0.28 3.09 -91.77 -0.28 -0.56 16 3 C -0.15 -0.70 9.01 37.16 0.33 -0.37 16 4 C -0.12 -0.83 4.78 -104.60 -0.50 -1.33 16 5 C -0.08 -0.59 9.66 -39.61 -0.38 -0.97 16 6 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 7 C 0.13 1.28 6.69 -39.22 -0.26 1.02 16 8 O -0.29 -3.44 9.67 -39.35 -0.38 -3.82 16 9 C 0.04 0.37 5.22 36.00 0.19 0.56 16 10 C 0.51 6.33 7.91 -10.99 -0.09 6.25 16 11 O -0.52 -8.90 16.50 -14.36 -0.24 -9.14 16 12 N -0.72 -7.74 5.28 -60.29 -0.32 -8.06 16 13 C 0.13 1.69 5.07 -4.04 -0.02 1.67 16 14 C -0.11 -1.63 2.46 -90.61 -0.22 -1.85 16 15 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 17 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 18 N -0.73 -18.04 5.33 -59.91 -0.32 -18.36 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C -0.21 -1.68 9.04 -39.43 -0.36 -2.04 16 28 C -0.07 -0.53 8.70 -39.60 -0.34 -0.88 16 29 H 0.06 0.27 7.38 -51.93 -0.38 -0.11 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.27 7.38 -51.93 -0.38 -0.11 16 36 H 0.13 0.70 7.94 -52.49 -0.42 0.28 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.09 0.60 7.65 -51.93 -0.40 0.20 16 39 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 40 H 0.40 3.17 7.66 -40.82 -0.31 2.85 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.46 7.19 -51.93 -0.37 0.09 16 45 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 51 H 0.12 0.68 7.09 -52.49 -0.37 0.31 16 LS Contribution 415.21 15.07 6.26 6.26 Total: -1.00 -34.12 415.21 -9.86 -43.97 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.63 Total: 5.52 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.93 Total: -6.52 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.09 Total: -53.57 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.62 Total: -12.96 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.12 -9.86 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.481 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds