Wall clock time and date at job start Sat Apr 11 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99945 * 2 1 4 4 C 1.38754 * 120.05699 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94464 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05294 * 359.75364 * 5 4 3 7 7 C 1.38249 * 120.11299 * 0.50468 * 6 5 4 8 8 C 1.50703 * 119.97149 * 179.76667 * 7 6 5 9 9 C 1.52998 * 109.46825 * 174.11305 * 8 7 6 10 10 C 1.53005 * 109.46925 * 54.11433 * 8 7 6 11 11 C 1.50699 * 109.47051 * 294.11515 * 8 7 6 12 12 O 1.21282 * 119.99839 * 354.51277 * 11 8 7 13 13 N 1.34773 * 119.99729 * 174.51231 * 11 8 7 14 14 C 1.46499 * 119.99933 * 179.97438 * 13 11 8 15 15 C 1.53005 * 109.47293 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.46837 * 305.00436 * 15 14 13 17 17 C 1.53004 * 109.46921 * 64.99951 * 15 14 13 18 18 C 1.52995 * 109.47130 * 184.99918 * 15 14 13 19 19 N 1.46503 * 109.47117 * 174.99987 * 18 15 14 20 20 C 1.36931 * 120.00302 * 180.02562 * 19 18 15 21 21 H 1.07999 * 119.99977 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00145 * 179.72357 * 20 19 18 23 23 N 1.31622 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46878 * 89.99927 * 24 22 20 26 26 H 1.48495 * 109.47344 * 210.00432 * 24 22 20 27 27 H 1.48503 * 109.46922 * 330.00568 * 24 22 20 28 28 C 1.38161 * 120.05175 * 359.49288 * 7 6 5 29 29 H 1.08997 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47453 * 300.00483 * 1 2 3 31 31 H 1.09005 * 109.47028 * 60.00236 * 1 2 3 32 32 H 1.08006 * 120.02701 * 359.96710 * 4 3 2 33 33 H 1.07999 * 119.97078 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.94317 * 180.27208 * 6 5 4 35 35 H 1.09004 * 109.46802 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.47330 * 299.99978 * 9 8 7 37 37 H 1.09000 * 109.47237 * 60.00319 * 9 8 7 38 38 H 1.09001 * 109.46868 * 300.00146 * 10 8 7 39 39 H 1.08999 * 109.46960 * 59.99556 * 10 8 7 40 40 H 1.08996 * 109.46962 * 180.02562 * 10 8 7 41 41 H 0.97002 * 119.99999 * 0.02562 * 13 11 8 42 42 H 1.08996 * 109.47512 * 60.00453 * 14 13 11 43 43 H 1.08998 * 109.47372 * 300.00088 * 14 13 11 44 44 H 1.09002 * 109.47047 * 300.00313 * 17 15 14 45 45 H 1.08995 * 109.47196 * 60.00065 * 17 15 14 46 46 H 1.08999 * 109.46833 * 180.02562 * 17 15 14 47 47 H 1.08999 * 109.47222 * 55.00140 * 18 15 14 48 48 H 1.08998 * 109.47467 * 294.99823 * 18 15 14 49 49 H 0.97006 * 119.99437 * 359.97438 * 19 18 15 50 50 H 0.96993 * 120.00450 * 180.02562 * 23 22 20 51 51 H 1.08005 * 120.02485 * 180.23095 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6757 0.0062 7 6 4.0560 2.5170 0.0003 8 6 5.5609 2.5981 0.0006 9 6 6.1473 1.1920 0.1414 10 6 6.0247 3.4640 1.1737 11 6 6.0312 3.2113 -1.2931 12 8 5.2333 3.4575 -2.1728 13 7 7.3383 3.4862 -1.4726 14 6 7.7956 4.0818 -2.7305 15 6 9.3105 4.2897 -2.6754 16 1 9.5641 4.8822 -1.7964 17 6 10.0090 2.9309 -2.5934 18 6 9.7706 5.0245 -3.9360 19 7 11.1996 5.3292 -3.8294 20 6 11.8367 5.9889 -4.8462 21 1 11.2859 6.2843 -5.7269 22 6 13.1894 6.2827 -4.7428 23 7 13.8599 5.9267 -3.6675 24 14 14.0587 7.1821 -6.1302 25 1 13.9769 8.6467 -5.8984 26 1 15.4837 6.7665 -6.1732 27 1 13.4064 6.8481 -7.4218 28 6 3.4311 1.2848 -0.0002 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3204 0.0004 33 1 1.3340 4.5114 0.0019 34 1 3.7923 4.6380 0.0111 35 1 7.2357 1.2507 0.1421 36 1 5.8071 0.7484 1.0772 37 1 5.8169 0.5751 -0.6943 38 1 5.6068 4.4657 1.0734 39 1 5.6844 3.0205 2.1095 40 1 7.1131 3.5230 1.1737 41 1 7.9764 3.2889 -0.7691 42 1 7.3020 5.0423 -2.8783 43 1 7.5505 3.4161 -3.5580 44 1 9.6811 2.4074 -1.6953 45 1 9.7553 2.3383 -3.4723 46 1 11.0882 3.0790 -2.5537 47 1 9.2082 5.9522 -4.0415 48 1 9.5977 4.3936 -4.8078 49 1 11.6943 5.0642 -3.0382 50 1 14.8050 6.1323 -3.5950 51 1 4.0207 0.3799 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:11 Heat of formation + Delta-G solvation = -50.859547 kcal Electronic energy + Delta-G solvation = -28546.216979 eV Core-core repulsion = 24638.816815 eV Total energy + Delta-G solvation = -3907.400164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95292 -39.83864 -37.93030 -36.73355 -35.25882 -34.30620 -32.41223 -31.06425 -30.10623 -29.57800 -28.01848 -27.25354 -26.57106 -25.42933 -24.09044 -22.64347 -22.36322 -21.51795 -20.23956 -19.43063 -18.24692 -17.15638 -16.70367 -16.45929 -16.21625 -16.09685 -16.00066 -15.36517 -14.85101 -14.46485 -14.39209 -14.17854 -14.08331 -13.82387 -13.61050 -13.13251 -12.97813 -12.81196 -12.67078 -12.54306 -12.46954 -12.36468 -12.24382 -12.13030 -12.03552 -11.68424 -11.41050 -11.21271 -11.05328 -10.90748 -10.89469 -10.69899 -10.55361 -10.40831 -10.05881 -9.76152 -9.62713 -9.04878 -8.99226 -8.87360 -8.38376 -6.91967 -5.76920 -3.05186 1.07791 1.27828 2.62358 2.93560 3.15891 3.44115 3.49421 3.50995 3.63270 4.17645 4.46481 4.57279 4.59610 4.64509 4.70876 4.78572 4.80806 4.83232 5.06810 5.07646 5.10323 5.22501 5.24393 5.26216 5.35393 5.39212 5.41750 5.45548 5.55569 5.58137 5.75026 5.80331 5.82999 5.83425 5.97677 6.00989 6.06900 6.11971 6.23597 6.25265 6.39756 6.40274 6.50797 6.51344 6.65524 6.77770 6.87456 7.13702 7.50354 7.70849 8.21979 8.42250 9.53571 10.10910 10.45791 11.46059 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.029932 B = 0.001827 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.240078 B =15320.414933 C =15503.952016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.210 4.210 5 C -0.080 4.080 6 C -0.128 4.128 7 C -0.017 4.017 8 C -0.043 4.043 9 C -0.145 4.145 10 C -0.140 4.140 11 C 0.521 3.479 12 O -0.531 6.531 13 N -0.722 5.722 14 C 0.127 3.873 15 C -0.110 4.110 16 H 0.076 0.924 17 C -0.141 4.141 18 C 0.160 3.840 19 N -0.730 5.730 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.146 4.146 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.021 0.979 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.460 -11.461 14.230 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.228 4.228 5 C -0.098 4.098 6 C -0.146 4.146 7 C -0.018 4.018 8 C -0.046 4.046 9 C -0.202 4.202 10 C -0.197 4.197 11 C 0.306 3.694 12 O -0.407 6.407 13 N -0.374 5.374 14 C 0.003 3.997 15 C -0.129 4.129 16 H 0.094 0.906 17 C -0.199 4.199 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.164 4.164 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.234 0.766 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.040 0.960 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.912 -11.390 13.405 31.318 hybrid contribution 0.732 0.547 -0.251 0.948 sum -25.180 -10.843 13.154 30.408 Atomic orbital electron populations 1.23035 0.78507 1.03829 1.01318 1.86057 1.21281 1.27040 1.88922 1.18922 0.92195 0.84077 0.96985 1.21201 0.99831 0.92484 1.09313 1.20869 0.94446 0.96958 0.97567 1.20835 0.93630 0.98003 1.02158 1.19029 0.93005 0.92556 0.97185 1.19736 0.92519 0.97885 0.94487 1.21965 1.01199 0.93848 1.03177 1.21921 1.01708 0.99569 0.96550 1.20256 0.82361 0.78298 0.88487 1.90729 1.53765 1.52291 1.43910 1.46044 1.08073 1.64051 1.19235 1.21416 0.94495 0.98365 0.85409 1.21547 0.92461 0.97906 1.00994 0.90559 1.21790 1.01949 0.95664 1.00456 1.20574 0.87113 0.95753 0.93343 1.42334 1.03654 1.69524 1.21994 1.19244 0.91956 1.28522 0.97265 0.91160 1.24730 0.96646 1.01844 0.97806 1.69653 1.08537 1.52277 1.27859 0.86181 0.78952 0.79473 0.81540 1.21743 1.21781 1.20765 1.20337 0.91315 0.98272 1.06481 0.88318 0.92740 0.92666 0.85714 0.85808 0.86137 0.91393 0.90827 0.91443 0.91589 0.91031 0.91382 0.76560 0.91398 0.91403 0.93938 0.92819 0.91161 0.96161 0.96010 0.78216 0.93550 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.16 10.50 -19.43 -0.20 -3.36 16 3 C 0.12 1.32 6.69 -39.22 -0.26 1.05 16 4 C -0.21 -2.00 9.04 -39.43 -0.36 -2.36 16 5 C -0.08 -0.79 10.04 -39.60 -0.40 -1.18 16 6 C -0.13 -1.40 8.38 -39.56 -0.33 -1.73 16 7 C -0.02 -0.19 4.23 -104.64 -0.44 -0.63 16 8 C -0.04 -0.41 0.72 -156.81 -0.11 -0.52 16 9 C -0.14 -1.12 7.11 37.16 0.26 -0.86 16 10 C -0.14 -1.05 8.07 37.16 0.30 -0.75 16 11 C 0.52 6.59 6.35 -10.99 -0.07 6.52 16 12 O -0.53 -8.88 15.54 5.56 0.09 -8.79 16 13 N -0.72 -8.30 5.11 -60.30 -0.31 -8.60 16 14 C 0.13 1.74 5.06 -4.04 -0.02 1.72 16 15 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 16 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 17 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 18 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 19 N -0.73 -18.24 5.33 -59.91 -0.32 -18.56 16 20 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C -0.15 -1.58 8.93 -39.44 -0.35 -1.93 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 31 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.12 0.89 6.30 -52.48 -0.33 0.56 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 1.26 7.23 -52.49 -0.38 0.88 16 35 H 0.07 0.45 7.96 -51.93 -0.41 0.04 16 36 H 0.07 0.47 7.77 -51.93 -0.40 0.07 16 37 H 0.07 0.58 7.25 -51.93 -0.38 0.20 16 38 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.43 7.27 -51.93 -0.38 0.05 16 41 H 0.40 3.70 6.57 -40.82 -0.27 3.43 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.38 9.94 6.85 -40.82 -0.28 9.66 16 50 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.13 1.29 5.91 -52.48 -0.31 0.98 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -34.10 406.60 -8.27 -42.37 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.40 Total: 8.04 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.95 Total: -7.33 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.10 Total: -54.50 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.12 Total: -12.15 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.10 -8.27 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.490 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds