Wall clock time and date at job start Sat Apr 11 2020 04:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47054 * 2 1 4 4 C 1.36934 * 119.99869 * 275.30947 * 3 2 1 5 5 H 1.08006 * 120.00219 * 37.57564 * 4 3 2 6 6 C 1.38816 * 119.99836 * 217.58012 * 4 3 2 7 7 N 1.31619 * 120.00572 * 21.42796 * 6 4 3 8 8 Si 1.86805 * 119.99735 * 201.42980 * 6 4 3 9 9 H 1.48501 * 109.47381 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47119 * 119.99820 * 8 6 4 11 11 H 1.48500 * 109.47294 * 239.99446 * 8 6 4 12 12 C 1.46503 * 119.99984 * 95.30725 * 3 2 1 13 13 C 1.52993 * 109.47019 * 269.99524 * 12 3 2 14 14 N 1.46503 * 109.47019 * 179.97438 * 13 12 3 15 15 C 1.34772 * 120.00286 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99860 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00277 * 180.02562 * 15 14 13 18 18 O 1.42902 * 109.47516 * 180.02562 * 17 15 14 19 19 C 1.35899 * 117.00506 * 179.97438 * 18 17 15 20 20 C 1.38737 * 120.05394 * 269.73180 * 19 18 17 21 21 C 1.50697 * 120.02869 * 359.97438 * 20 19 18 22 22 C 1.38148 * 119.94129 * 179.70041 * 20 19 18 23 23 C 1.38270 * 120.05237 * 0.59196 * 22 20 19 24 24 C 1.50699 * 119.93875 * 179.70822 * 23 22 20 25 25 C 1.38263 * 120.11471 * 359.67516 * 23 22 20 26 26 C 1.38143 * 120.05273 * 0.03076 * 25 23 22 27 27 C 1.50703 * 120.02624 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47150 * 60.00238 * 1 2 3 29 29 H 1.08997 * 109.47403 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47132 * 300.00386 * 1 2 3 31 31 H 1.08999 * 109.47132 * 239.99614 * 2 1 3 32 32 H 1.08997 * 109.46670 * 119.99536 * 2 1 3 33 33 H 0.96996 * 120.00502 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46373 * 150.00108 * 12 3 2 35 35 H 1.08997 * 109.46906 * 30.00099 * 12 3 2 36 36 H 1.09008 * 109.46986 * 60.00503 * 13 12 3 37 37 H 1.08997 * 109.47751 * 300.00058 * 13 12 3 38 38 H 0.96998 * 119.99809 * 0.02562 * 14 13 12 39 39 H 1.08995 * 109.47291 * 60.00030 * 17 15 14 40 40 H 1.09002 * 109.47352 * 299.99790 * 17 15 14 41 41 H 1.09000 * 109.46999 * 90.00493 * 21 20 19 42 42 H 1.09003 * 109.47343 * 210.00308 * 21 20 19 43 43 H 1.08999 * 109.47208 * 330.01082 * 21 20 19 44 44 H 1.07996 * 119.97438 * 180.31213 * 22 20 19 45 45 H 1.08998 * 109.46471 * 269.97036 * 24 23 22 46 46 H 1.08998 * 109.47799 * 29.97440 * 24 23 22 47 47 H 1.09000 * 109.47181 * 149.97455 * 24 23 22 48 48 H 1.07998 * 119.97240 * 180.02562 * 25 23 22 49 49 H 1.08996 * 109.47089 * 269.97580 * 27 26 25 50 50 H 1.09000 * 109.47134 * 29.97272 * 27 26 25 51 51 H 1.08997 * 109.47486 * 149.97416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9277 -1.9628 6 6 3.2112 2.9289 -1.3728 7 7 4.3027 2.7981 -0.6491 8 14 3.0993 4.2795 -2.6585 9 1 1.7771 4.2142 -3.3314 10 1 3.2549 5.6023 -2.0016 11 1 4.1766 4.0964 -3.6639 12 6 2.3731 2.0327 1.2633 13 6 1.1425 2.7383 1.8364 14 7 1.4972 3.3893 3.1000 15 6 0.5646 4.0759 3.7894 16 8 -0.5684 4.1545 3.3639 17 6 0.9295 4.7460 5.0889 18 8 -0.2201 5.4041 5.6249 19 6 -0.0612 6.0617 6.8036 20 6 -0.2789 5.3999 8.0033 21 6 -0.6926 3.9508 8.0010 22 6 -0.1107 6.0689 9.2002 23 6 0.2625 7.4003 9.2028 24 6 0.4389 8.1294 10.5098 25 6 0.4747 8.0636 8.0083 26 6 0.3136 7.3973 6.8090 27 6 0.5456 8.1207 5.5074 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 5.0489 3.4031 -0.7831 34 1 3.1616 2.7642 1.0859 35 1 2.7254 1.2834 1.9721 36 1 0.3540 2.0069 2.0138 37 1 0.7903 3.4877 1.1276 38 1 2.4032 3.3262 3.4405 39 1 1.7177 5.4778 4.9116 40 1 1.2822 3.9967 5.7976 41 1 0.1956 3.3194 8.0242 42 1 -1.3065 3.7468 8.8783 43 1 -1.2660 3.7381 7.0988 44 1 -0.2752 5.5529 10.1345 45 1 -0.5078 8.5829 10.8034 46 1 0.7584 7.4257 11.2783 47 1 1.1935 8.9072 10.3930 48 1 0.7665 9.1034 8.0130 49 1 -0.3875 8.5729 5.1717 50 1 1.2948 8.8990 5.6528 51 1 0.8975 7.4135 4.7563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663451618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:07:54 Heat of formation + Delta-G solvation = -45.676384 kcal Electronic energy + Delta-G solvation = -28646.645297 eV Core-core repulsion = 24739.469892 eV Total energy + Delta-G solvation = -3907.175405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.58430 -39.23913 -37.48113 -36.27773 -34.09084 -33.81510 -32.98302 -31.90676 -30.14155 -28.80273 -28.17749 -27.15385 -26.93469 -25.72281 -24.16179 -21.87805 -21.19060 -20.89348 -20.50643 -20.08833 -17.96980 -17.19019 -16.97456 -16.47734 -15.61094 -15.41647 -14.98451 -14.80991 -14.61930 -14.21639 -14.15074 -13.88989 -13.62064 -13.55698 -13.36119 -13.30202 -13.20947 -12.84622 -12.81810 -12.73256 -12.48331 -12.40471 -12.06844 -11.97633 -11.53841 -11.51674 -11.40770 -11.26882 -11.14461 -10.79995 -10.66699 -10.50627 -10.10211 -10.04444 -9.89209 -9.84273 -9.47899 -8.82625 -8.61353 -8.55234 -8.48568 -6.65242 -5.86265 -3.44833 0.91373 1.09335 2.85853 2.88049 3.32469 3.41733 3.43188 3.46166 4.06495 4.44720 4.49799 4.51926 4.56492 4.90404 4.97842 4.98812 5.02367 5.08657 5.21540 5.23266 5.25773 5.26848 5.38947 5.41510 5.50045 5.52217 5.54169 5.61178 5.64153 5.92435 5.97580 6.07495 6.08271 6.14401 6.18256 6.27899 6.36830 6.37120 6.39818 6.48630 6.54446 6.67164 6.82383 6.90267 6.98936 7.15333 7.37040 7.51112 7.78544 7.86233 8.45276 8.52951 9.12032 9.73884 10.31794 11.13786 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.002346 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.385552 B =11932.469347 C =13021.229627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.099 3.901 14 N -0.718 5.718 15 C 0.508 3.492 16 O -0.525 6.525 17 C 0.047 3.953 18 O -0.304 6.304 19 C 0.085 3.915 20 C -0.090 4.090 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.085 4.085 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.089 4.089 27 C -0.113 4.113 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.125 0.875 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 7.228 21.927 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.026 4.026 14 N -0.371 5.371 15 C 0.292 3.708 16 O -0.400 6.400 17 C -0.031 4.031 18 O -0.220 6.220 19 C 0.041 3.959 20 C -0.091 4.091 21 C -0.173 4.173 22 C -0.136 4.136 23 C -0.085 4.085 24 C -0.169 4.169 25 C -0.135 4.135 26 C -0.090 4.090 27 C -0.170 4.170 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.231 0.769 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.143 0.857 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.143 0.857 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.865 7.313 21.444 23.173 hybrid contribution 0.573 0.793 -0.337 1.035 sum -4.292 8.106 21.107 23.014 Atomic orbital electron populations 1.22390 0.99878 0.99108 1.01434 1.20884 0.91782 0.86942 0.98911 1.43619 1.76021 1.08305 1.02069 1.19066 1.04735 1.21153 0.93931 0.92012 1.25190 0.94163 1.01254 0.98160 1.70000 1.03180 1.37264 1.42546 0.86337 0.77798 0.82143 0.81195 1.19954 1.21376 1.21574 1.21059 0.94519 0.96969 0.86462 1.22506 1.01197 0.96525 0.82338 1.46020 1.12921 1.53445 1.24680 1.20037 0.85946 0.79609 0.85219 1.90728 1.20232 1.59862 1.69212 1.22473 0.88807 0.97126 0.94658 1.86124 1.32564 1.68492 1.34805 1.18381 1.02068 0.90475 0.84979 1.20231 0.99541 0.97034 0.92283 1.20752 1.01646 0.91318 1.03588 1.20790 1.01625 0.94065 0.97086 1.19915 0.99068 0.94190 0.95355 1.20779 1.02194 1.00050 0.93927 1.20790 1.02136 0.99732 0.90869 1.20249 0.98647 0.93897 0.96203 1.20735 1.02366 0.99978 0.93897 0.93082 0.94433 0.93663 0.93545 0.94723 0.93573 0.88369 0.95253 0.92881 0.91652 0.76912 0.90070 0.90183 0.91231 0.91372 0.90393 0.85736 0.91127 0.91520 0.91507 0.85708 0.90630 0.91480 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.21 37.16 0.38 -2.74 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -13.92 2.43 -173.24 -0.42 -14.35 16 4 C -0.26 -6.91 9.45 -15.06 -0.14 -7.05 16 5 H 0.06 1.67 7.92 -52.48 -0.42 1.25 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -24.46 11.47 55.49 0.64 -23.83 16 8 Si 0.90 21.28 29.60 -169.99 -5.03 16.25 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.14 3.00 5.45 -4.04 -0.02 2.97 16 13 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 14 N -0.72 -11.70 5.56 -60.30 -0.33 -12.03 16 15 C 0.51 8.58 7.91 -10.99 -0.09 8.49 16 16 O -0.52 -11.28 16.50 -14.36 -0.24 -11.51 16 17 C 0.05 0.61 6.17 36.00 0.22 0.83 16 18 O -0.30 -4.48 7.85 -39.33 -0.31 -4.79 16 19 C 0.08 1.08 5.67 -39.22 -0.22 0.86 16 20 C -0.09 -1.00 5.89 -104.47 -0.62 -1.62 16 21 C -0.12 -1.14 9.79 36.00 0.35 -0.79 16 22 C -0.12 -1.10 9.35 -39.60 -0.37 -1.47 16 23 C -0.09 -0.76 5.88 -104.60 -0.62 -1.37 16 24 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 25 C -0.12 -1.12 9.35 -39.61 -0.37 -1.49 16 26 C -0.09 -1.02 5.89 -104.47 -0.62 -1.63 16 27 C -0.11 -1.19 9.79 36.01 0.35 -0.84 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.84 6.64 -51.93 -0.34 0.50 16 31 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 33 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.10 2.40 5.52 -51.93 -0.29 2.11 16 35 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 36 H 0.05 1.09 6.64 -51.92 -0.34 0.75 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.40 5.28 8.47 -40.82 -0.35 4.93 16 39 H 0.08 0.89 7.26 -51.93 -0.38 0.52 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 47 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 51 H 0.07 0.81 6.33 -51.93 -0.33 0.48 16 LS Contribution 416.78 15.07 6.28 6.28 Total: -1.00 -32.09 416.78 -9.64 -41.73 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.69 Total: 3.31 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.53 Total: -1.06 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.12 Total: -50.21 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.55 Total: -16.30 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.09 -9.64 -41.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663451618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.948 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds