Wall clock time and date at job start Sat Apr 11 2020 04:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 119.99978 * 2 1 4 4 C 1.50699 * 109.47389 * 270.00017 * 3 2 1 5 5 H 1.08000 * 119.99644 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00202 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99832 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00381 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47109 * 89.99743 * 8 6 4 10 10 H 1.48494 * 109.47329 * 210.00251 * 8 6 4 11 11 H 1.48499 * 109.46810 * 330.00404 * 8 6 4 12 12 C 1.39671 * 119.99433 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07990 * 359.97438 * 12 2 1 14 14 C 1.38100 * 119.92579 * 179.97438 * 13 12 2 15 15 C 1.38288 * 120.07492 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.92261 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.46913 * 90.00341 * 16 15 14 18 18 C 1.46895 * 110.99791 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.46795 * 179.97438 * 18 17 16 20 20 O 1.42891 * 109.47229 * 65.00170 * 19 18 17 21 21 C 1.42902 * 114.00371 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.79649 * 26.37608 * 21 20 19 23 23 C 1.54807 * 110.90592 * 149.99788 * 21 20 19 24 24 C 1.54105 * 104.18504 * 139.12065 * 23 21 20 25 25 O 1.43746 * 107.42259 * 1.95340 * 24 23 21 26 26 C 1.44586 * 106.86832 * 333.67423 * 25 24 23 27 27 C 1.38279 * 120.15023 * 0.27907 * 15 14 13 28 28 C 1.38114 * 120.07385 * 359.44648 * 27 15 14 29 29 H 1.08999 * 109.46609 * 270.00123 * 1 2 3 30 30 H 1.09000 * 109.47085 * 29.99215 * 1 2 3 31 31 H 1.08991 * 109.47165 * 149.99661 * 1 2 3 32 32 H 1.09004 * 109.47103 * 30.00516 * 3 2 1 33 33 H 1.09001 * 109.46661 * 149.99993 * 3 2 1 34 34 H 0.96998 * 119.99528 * 180.02562 * 7 6 4 35 35 H 1.07999 * 120.03411 * 359.97438 * 13 12 2 36 36 H 1.08001 * 119.96254 * 180.02562 * 14 13 12 37 37 H 1.08996 * 109.47236 * 330.00058 * 16 15 14 38 38 H 1.08998 * 109.46829 * 210.00135 * 16 15 14 39 39 H 1.00901 * 111.00062 * 303.95312 * 17 16 15 40 40 H 1.09001 * 109.47424 * 60.00304 * 18 17 16 41 41 H 1.09000 * 109.47661 * 300.00243 * 18 17 16 42 42 H 1.08994 * 109.47237 * 304.99582 * 19 18 17 43 43 H 1.09000 * 109.46840 * 185.00056 * 19 18 17 44 44 H 1.08996 * 110.48875 * 20.44334 * 23 21 20 45 45 H 1.09003 * 110.60294 * 257.84825 * 23 21 20 46 46 H 1.09002 * 109.88076 * 121.45430 * 24 23 21 47 47 H 1.08996 * 109.87584 * 242.45546 * 24 23 21 48 48 H 1.08999 * 110.50225 * 281.37988 * 26 25 24 49 49 H 1.08994 * 110.77338 * 158.50734 * 26 25 24 50 50 H 1.07997 * 119.96255 * 179.70161 * 27 15 14 51 51 H 1.07995 * 120.03591 * 180.27296 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5552 3.6170 -0.6730 8 14 3.4377 3.4172 -3.4338 9 1 2.3079 4.2608 -3.8997 10 1 4.6984 4.1993 -3.4967 11 1 3.5538 2.2202 -4.3051 12 6 2.1633 -1.2097 -0.0005 13 6 1.4703 -2.4136 -0.0005 14 6 2.1639 -3.6078 -0.0016 15 6 3.5468 -3.6060 -0.0032 16 6 4.3002 -4.9112 -0.0050 17 7 4.5435 -5.3342 -1.3906 18 6 5.2781 -6.6056 -1.4315 19 6 5.5115 -7.0131 -2.8877 20 8 6.3701 -6.0600 -3.5172 21 6 6.6537 -6.3492 -4.8876 22 1 5.8496 -6.9341 -5.3342 23 6 6.8995 -5.0469 -5.6876 24 6 8.0849 -5.3889 -6.6110 25 8 8.4282 -6.7653 -6.3788 26 6 8.0135 -7.0793 -5.0297 27 6 4.2398 -2.4094 0.0021 28 6 3.5524 -1.2115 -0.0026 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 4.0320 4.4429 -0.8503 35 1 0.3903 -2.4156 0.0003 36 1 1.6257 -4.5441 -0.0020 37 1 3.7117 -5.6711 0.5090 38 1 5.2532 -4.7812 0.5079 39 1 3.6784 -5.3993 -1.9060 40 1 4.6967 -7.3776 -0.9273 41 1 6.2379 -6.4872 -0.9286 42 1 4.5572 -7.0455 -3.4133 43 1 5.9772 -7.9981 -2.9191 44 1 7.1627 -4.2302 -5.0155 45 1 6.0199 -4.7866 -6.2765 46 1 7.7955 -5.2497 -7.6526 47 1 8.9355 -4.7498 -6.3742 48 1 8.7340 -6.6924 -4.3091 49 1 7.8868 -8.1546 -4.9046 50 1 5.3198 -2.4116 0.0057 51 1 4.0943 -0.2773 -0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922942607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:07:13 Heat of formation + Delta-G solvation = -55.206246 kcal Electronic energy + Delta-G solvation = -28081.203525 eV Core-core repulsion = 24173.614874 eV Total energy + Delta-G solvation = -3907.588651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85793 -39.03902 -37.76822 -36.42028 -34.98377 -32.72008 -31.81350 -30.58478 -30.41524 -29.02891 -28.02627 -27.76131 -25.44812 -23.91848 -23.05237 -22.24235 -21.98395 -21.53530 -21.49927 -19.55485 -17.64278 -16.87876 -16.67120 -16.44435 -16.00264 -15.88540 -15.37903 -15.19563 -14.93601 -14.45644 -14.29088 -14.23494 -14.00034 -13.70514 -13.50941 -13.43237 -12.96653 -12.84862 -12.58039 -12.52291 -12.14802 -12.05773 -11.81326 -11.76664 -11.56962 -11.39236 -11.30608 -11.23780 -10.96696 -10.90993 -10.68335 -10.62948 -10.24316 -10.13036 -9.88791 -9.74399 -9.66496 -8.83999 -8.49604 -8.34268 -8.23863 -6.45607 -6.00687 -4.16282 2.13370 2.23342 3.18754 3.27232 3.34179 3.39180 3.81225 4.12033 4.19073 4.23635 4.42552 4.48089 4.62796 4.67727 4.79245 4.87643 4.93801 5.00037 5.14254 5.22688 5.24321 5.33227 5.35183 5.39175 5.42166 5.47218 5.57636 5.62190 5.65188 5.71695 5.73696 5.80720 5.85816 6.03823 6.09497 6.28351 6.41168 6.43981 6.45891 6.65723 6.89932 6.98046 7.02940 7.08990 7.20043 7.28609 7.38786 7.44365 7.62620 7.82236 8.16533 8.27828 8.49897 8.92742 9.50607 10.96737 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.002627 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.818739 B =10655.781032 C =13177.938082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.616 5.616 3 C 0.249 3.751 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.241 3.759 13 C -0.222 4.222 14 C -0.069 4.069 15 C -0.172 4.172 16 C 0.116 3.884 17 N -0.676 5.676 18 C 0.059 3.941 19 C 0.064 3.936 20 O -0.351 6.351 21 C 0.056 3.944 22 H 0.076 0.924 23 C -0.156 4.156 24 C 0.048 3.952 25 O -0.377 6.377 26 C 0.026 3.974 27 C -0.049 4.049 28 C -0.188 4.188 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.340 0.660 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.112 0.888 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -22.151 -3.652 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.321 5.321 3 C 0.129 3.871 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.134 3.866 13 C -0.246 4.246 14 C -0.088 4.088 15 C -0.175 4.175 16 C -0.012 4.012 17 N -0.308 5.308 18 C -0.070 4.070 19 C -0.013 4.013 20 O -0.269 6.269 21 C -0.003 4.003 22 H 0.094 0.906 23 C -0.194 4.194 24 C -0.029 4.029 25 O -0.296 6.296 26 C -0.051 4.051 27 C -0.069 4.069 28 C -0.210 4.210 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.130 0.870 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.743 -21.344 -3.721 21.987 hybrid contribution -0.801 -0.184 -0.771 1.127 sum 2.942 -21.528 -4.492 22.188 Atomic orbital electron populations 1.21466 0.81563 1.01887 0.99643 1.47101 1.04347 1.04642 1.76053 1.19286 0.92084 0.78732 0.96992 1.21576 1.36322 1.06392 0.92646 0.92270 1.24960 0.95394 0.96311 0.97409 1.69934 1.38392 1.14371 1.30755 0.86522 0.77688 0.78708 0.84742 1.20659 1.21058 1.19751 1.17962 0.91544 0.85958 0.91114 1.20504 0.98897 0.91401 1.13755 1.20491 0.93314 0.96449 0.98578 1.19158 0.93048 0.93901 1.11426 1.20651 0.98633 0.93380 0.88490 1.60469 1.26689 1.29563 1.14050 1.21977 0.99674 0.91019 0.94371 1.22619 0.93410 0.91434 0.93845 1.88100 1.67579 1.49017 1.22230 1.23615 0.96668 0.96161 0.83841 0.90611 1.22984 0.99343 0.98564 0.98519 1.23149 0.96499 0.83261 1.00004 1.88919 1.82890 1.27480 1.30348 1.24044 0.95584 1.00632 0.84837 1.20648 0.98783 0.91306 0.96122 1.20903 0.92636 0.98838 1.08648 0.94654 0.91474 0.92732 0.95235 0.94598 0.92656 0.87002 0.87830 0.95582 0.90995 0.84219 0.94055 0.90130 0.93280 0.93077 0.88811 0.89770 0.89613 0.91908 0.91067 0.89032 0.87005 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.19 59.85 0.61 2.35 16 2 N -0.62 -13.27 2.99 -181.00 -0.54 -13.81 16 3 C 0.25 6.28 4.91 -5.20 -0.03 6.25 16 4 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.24 4.92 6.55 -83.79 -0.55 4.38 16 13 C -0.22 -3.86 9.21 -39.38 -0.36 -4.23 16 14 C -0.07 -1.06 9.69 -39.61 -0.38 -1.44 16 15 C -0.17 -2.67 5.39 -104.59 -0.56 -3.23 16 16 C 0.12 1.44 5.81 -4.97 -0.03 1.41 16 17 N -0.68 -8.04 6.44 -115.06 -0.74 -8.78 16 18 C 0.06 0.54 6.07 -3.82 -0.02 0.52 16 19 C 0.06 0.55 6.05 37.16 0.22 0.77 16 20 O -0.35 -3.88 10.05 -35.23 -0.35 -4.23 16 21 C 0.06 0.52 3.63 -24.73 -0.09 0.43 16 22 H 0.08 0.62 7.83 -51.93 -0.41 0.22 16 23 C -0.16 -1.47 6.78 -25.20 -0.17 -1.64 16 24 C 0.05 0.42 7.69 37.73 0.29 0.71 16 25 O -0.38 -4.01 11.54 -35.23 -0.41 -4.42 16 26 C 0.03 0.23 7.45 38.21 0.28 0.52 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 28 C -0.19 -3.86 9.21 -39.38 -0.36 -4.22 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 32 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 36 H 0.10 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 38 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.34 3.94 8.72 -39.29 -0.34 3.60 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.99 8.08 -51.93 -0.42 0.58 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 51 H 0.13 2.98 6.14 -52.49 -0.32 2.65 16 LS Contribution 413.59 15.07 6.23 6.23 Total: -1.00 -30.60 413.59 -10.80 -41.41 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.75 Total: 4.19 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.95 Total: -11.96 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.55 Total: -47.64 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.76 Total: -8.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.60 -10.80 -41.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922942607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.801 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds