Wall clock time and date at job start Sat Apr 11 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 119.99963 * 2 1 4 4 C 1.50702 * 109.46964 * 270.00173 * 3 2 1 5 5 H 1.07989 * 120.00241 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99789 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00275 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00122 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47061 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47470 * 119.99979 * 8 6 4 11 11 H 1.48504 * 109.47223 * 240.00012 * 8 6 4 12 12 C 1.39675 * 119.99910 * 180.02562 * 2 1 3 13 13 C 1.38915 * 120.07325 * 359.97438 * 12 2 1 14 14 C 1.38102 * 119.92105 * 180.02562 * 13 12 2 15 15 C 1.38290 * 120.07667 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.92354 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46857 * 89.99810 * 16 15 14 18 18 C 1.46840 * 111.00497 * 294.20901 * 17 16 15 19 19 C 1.53036 * 109.52594 * 174.16016 * 18 17 16 20 20 C 1.53119 * 109.27852 * 59.18079 * 19 18 17 21 21 H 1.09002 * 109.52432 * 62.24925 * 20 19 18 22 22 O 1.42901 * 109.57407 * 182.41121 * 20 19 18 23 23 C 1.53117 * 109.15738 * 302.34572 * 20 19 18 24 24 H 1.09004 * 109.50737 * 297.66795 * 23 20 19 25 25 C 1.53004 * 109.50221 * 177.59389 * 23 20 19 26 26 O 1.42896 * 109.47300 * 174.99303 * 25 23 20 27 27 C 1.46847 * 111.00076 * 169.99494 * 17 16 15 28 28 C 1.38279 * 120.14599 * 0.27297 * 15 14 13 29 29 C 1.38101 * 120.07860 * 359.45733 * 28 15 14 30 30 H 1.09004 * 109.47059 * 269.99835 * 1 2 3 31 31 H 1.09003 * 109.47068 * 29.99699 * 1 2 3 32 32 H 1.09000 * 109.47419 * 150.00186 * 1 2 3 33 33 H 1.09006 * 109.47033 * 30.00093 * 3 2 1 34 34 H 1.08999 * 109.47542 * 150.00040 * 3 2 1 35 35 H 0.96998 * 120.00407 * 179.97438 * 7 6 4 36 36 H 1.07995 * 120.03607 * 0.04263 * 13 12 2 37 37 H 1.08000 * 119.96029 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47700 * 330.00136 * 16 15 14 39 39 H 1.09001 * 109.47076 * 209.99919 * 16 15 14 40 40 H 1.09000 * 109.46098 * 294.17938 * 18 17 16 41 41 H 1.09000 * 109.46549 * 54.15460 * 18 17 16 42 42 H 1.08999 * 109.50328 * 299.23405 * 19 18 17 43 43 H 1.09001 * 109.50559 * 179.12021 * 19 18 17 44 44 H 0.96704 * 113.99540 * 299.83738 * 22 20 19 45 45 H 1.08995 * 109.47627 * 295.00369 * 25 23 20 46 46 H 1.09004 * 109.47043 * 55.00022 * 25 23 20 47 47 H 0.96704 * 114.00069 * 179.97438 * 26 25 23 48 48 H 1.09004 * 109.45626 * 65.82689 * 27 17 16 49 49 H 1.08999 * 109.46589 * 305.86220 * 27 17 16 50 50 H 1.08008 * 119.95963 * 179.70632 * 28 15 14 51 51 H 1.08004 * 120.03838 * 180.28187 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4375 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8005 4.7382 -3.6665 11 1 4.9001 3.5247 -3.6680 12 6 2.1634 -1.2096 -0.0005 13 6 1.4703 -2.4135 -0.0005 14 6 2.1640 -3.6077 -0.0005 15 6 3.5469 -3.6059 0.0000 16 6 4.3004 -4.9110 0.0006 17 7 4.5456 -5.3354 -1.3843 18 6 3.2858 -5.6536 -2.0682 19 6 3.5654 -5.9496 -3.5434 20 6 4.5361 -7.1292 -3.6472 21 1 4.0780 -8.0174 -3.2121 22 8 4.8454 -7.3753 -5.0205 23 6 5.8209 -6.7911 -2.8860 24 1 6.2997 -5.9266 -3.3459 25 6 6.7730 -7.9878 -2.9339 26 8 8.0160 -7.6323 -2.3251 27 6 5.4760 -6.4706 -1.4299 28 6 4.2398 -2.4092 0.0062 29 6 3.5525 -1.2114 0.0006 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1384 0.5138 35 1 4.0317 4.4431 -0.8504 36 1 0.3904 -2.4156 -0.0008 37 1 1.6258 -4.5441 -0.0001 38 1 3.7111 -5.6706 0.5143 39 1 5.2526 -4.7806 0.5147 40 1 2.8303 -6.5274 -1.6024 41 1 2.6061 -4.8050 -1.9908 42 1 4.0081 -5.0714 -4.0133 43 1 2.6321 -6.2010 -4.0474 44 1 4.0759 -7.5942 -5.5638 45 1 6.3309 -8.8257 -2.3950 46 1 6.9454 -8.2736 -3.9715 47 1 8.6694 -8.3452 -2.3196 48 1 5.0102 -7.3406 -0.9670 49 1 6.3871 -6.2155 -0.8885 50 1 5.3199 -2.4114 0.0114 51 1 4.0943 -0.2772 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231816708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:07:07 Heat of formation + Delta-G solvation = -66.615056 kcal Electronic energy + Delta-G solvation = -29150.693789 eV Core-core repulsion = 25242.610415 eV Total energy + Delta-G solvation = -3908.083374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.94197 -38.88001 -36.98238 -36.71702 -35.44952 -32.92329 -32.42679 -31.47098 -30.42098 -29.62924 -27.79662 -26.26252 -25.69946 -24.47116 -23.13025 -22.36795 -21.75421 -21.08709 -20.03247 -19.52288 -17.63171 -17.54109 -16.63598 -16.43153 -15.99844 -15.63769 -15.27528 -14.81142 -14.66454 -14.52500 -14.23538 -14.06261 -13.95195 -13.68935 -13.42026 -13.28008 -12.90808 -12.88404 -12.67306 -12.15850 -12.12589 -11.88529 -11.79379 -11.41554 -11.38893 -11.26768 -11.22412 -11.19858 -10.89480 -10.72443 -10.67562 -10.49101 -10.24321 -10.19604 -9.99547 -9.86215 -9.72742 -8.82113 -8.49434 -8.28656 -8.21177 -6.45066 -6.00309 -4.15926 2.12422 2.22559 3.27147 3.35413 3.40440 3.78006 3.93782 3.97570 4.16842 4.42980 4.54939 4.62422 4.75298 4.77570 4.92703 5.06455 5.12688 5.21505 5.23011 5.25185 5.29587 5.41524 5.45256 5.56129 5.57202 5.64736 5.67068 5.78346 5.82465 5.88476 5.97043 6.00609 6.03859 6.09363 6.18713 6.28282 6.40868 6.45726 6.65312 6.93067 7.02154 7.06983 7.15652 7.24129 7.29407 7.34865 7.39157 7.40110 7.62377 7.82729 8.16851 8.27993 8.50150 8.93442 9.51081 10.97031 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.002696 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.549211 B =10383.799239 C =11225.744101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.616 5.616 3 C 0.249 3.751 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.242 3.758 13 C -0.222 4.222 14 C -0.069 4.069 15 C -0.167 4.167 16 C 0.113 3.887 17 N -0.533 5.533 18 C 0.055 3.945 19 C -0.147 4.147 20 C 0.111 3.889 21 H 0.051 0.949 22 O -0.566 6.566 23 C -0.076 4.076 24 H 0.095 0.905 25 C 0.085 3.915 26 O -0.571 6.571 27 C 0.068 3.932 28 C -0.050 4.050 29 C -0.188 4.188 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.263 0.737 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.377 0.623 45 H 0.040 0.960 46 H 0.056 0.944 47 H 0.377 0.623 48 H 0.028 0.972 49 H 0.088 0.912 50 H 0.112 0.888 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 -24.364 -1.673 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.322 5.322 3 C 0.129 3.871 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.089 4.089 15 C -0.170 4.170 16 C -0.014 4.014 17 N -0.257 5.257 18 C -0.073 4.073 19 C -0.186 4.186 20 C 0.052 3.948 21 H 0.069 0.931 22 O -0.372 6.372 23 C -0.095 4.095 24 H 0.113 0.887 25 C 0.006 3.994 26 O -0.376 6.376 27 C -0.060 4.060 28 C -0.070 4.070 29 C -0.210 4.210 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.225 0.775 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.224 0.776 48 H 0.046 0.954 49 H 0.106 0.894 50 H 0.130 0.870 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.982 -22.872 -1.573 22.947 hybrid contribution -0.609 -0.841 -0.917 1.386 sum 0.373 -23.713 -2.490 23.846 Atomic orbital electron populations 1.21465 0.81569 1.01873 0.99632 1.47100 1.04343 1.04650 1.76057 1.19290 0.92087 0.78735 0.97005 1.21612 1.36267 1.06349 0.92660 0.92220 1.24962 0.95411 0.96305 0.97403 1.69939 1.38400 1.14394 1.30698 0.86474 0.78103 0.78408 0.84693 1.19719 1.20979 1.20797 1.17949 0.91521 0.85936 0.91129 1.20506 0.98885 0.91393 1.13770 1.20490 0.93313 0.96384 0.98668 1.19113 0.93050 0.93742 1.11094 1.20798 0.99170 0.93743 0.87652 1.61923 1.12394 1.35035 1.16357 1.22091 0.92018 1.00204 0.92968 1.22295 0.99149 0.99701 0.97409 1.21806 0.94826 0.96144 0.81988 0.93135 1.86517 1.37776 1.92662 1.20247 1.21126 0.93751 0.98995 0.95623 0.88670 1.22135 0.84410 0.95989 0.96836 1.86504 1.25384 1.42953 1.82787 1.22032 0.97148 0.91669 0.95183 1.20640 0.98787 0.91288 0.96262 1.20896 0.92644 0.98823 1.08635 0.94661 0.91480 0.92751 0.95233 0.94596 0.92706 0.87011 0.87845 0.95001 0.90529 0.95444 0.89097 0.89807 0.91266 0.77540 0.94204 0.92598 0.77611 0.95411 0.89402 0.87000 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.19 59.85 0.61 2.35 16 2 N -0.62 -13.25 2.99 -180.99 -0.54 -13.80 16 3 C 0.25 6.27 4.91 -5.20 -0.03 6.25 16 4 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.24 4.91 6.55 -83.79 -0.55 4.36 16 13 C -0.22 -3.84 9.21 -39.38 -0.36 -4.20 16 14 C -0.07 -1.06 7.86 -39.61 -0.31 -1.37 16 15 C -0.17 -2.59 4.89 -104.59 -0.51 -3.10 16 16 C 0.11 1.45 5.12 -4.98 -0.03 1.43 16 17 N -0.53 -6.75 4.65 -236.12 -1.10 -7.85 16 18 C 0.06 0.64 5.15 -3.84 -0.02 0.62 16 19 C -0.15 -1.52 5.72 -26.65 -0.15 -1.67 16 20 C 0.11 1.05 2.94 -26.61 -0.08 0.97 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 O -0.57 -5.24 12.68 -35.23 -0.45 -5.69 16 23 C -0.08 -0.82 2.32 -90.54 -0.21 -1.03 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 C 0.08 0.77 6.37 37.16 0.24 1.01 16 26 O -0.57 -5.45 13.22 -35.23 -0.47 -5.91 16 27 C 0.07 0.75 4.63 -3.84 -0.02 0.73 16 28 C -0.05 -0.89 9.69 -39.62 -0.38 -1.27 16 29 C -0.19 -3.84 9.21 -39.38 -0.36 -4.20 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 32 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16 33 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.11 1.74 6.14 -52.49 -0.32 1.42 16 37 H 0.10 1.33 7.95 -52.49 -0.42 0.91 16 38 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 39 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 1.20 5.75 -51.93 -0.30 0.90 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.38 1.93 9.09 45.56 0.41 2.35 16 45 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.51 7.62 -51.93 -0.40 0.12 16 47 H 0.38 1.80 9.12 45.56 0.42 2.21 16 48 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 50 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 51 H 0.13 2.97 6.14 -52.48 -0.32 2.65 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -31.77 400.67 -10.37 -42.14 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.99 Total: 6.06 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.58 Total: -12.44 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.90 Total: -46.75 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.91 Total: -11.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.77 -10.37 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231816708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.473 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds