Wall clock time and date at job start Sat Apr 11 2020 04:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35449 * 125.56268 * 2 1 4 4 C 1.39830 * 107.86477 * 180.02562 * 3 2 1 5 5 C 1.37871 * 107.08712 * 359.97438 * 4 3 2 6 6 C 1.46678 * 126.23696 * 180.02562 * 5 4 3 7 7 O 1.21696 * 120.00304 * 188.37118 * 6 5 4 8 8 N 1.34774 * 119.99733 * 8.37114 * 6 5 4 9 9 C 1.46501 * 120.00215 * 5.76764 * 8 6 5 10 10 C 1.46501 * 120.00117 * 185.77048 * 8 6 5 11 11 C 1.53000 * 109.47269 * 270.00377 * 10 8 6 12 12 N 1.46896 * 109.47468 * 179.97438 * 11 10 8 13 13 C 1.46901 * 111.00104 * 169.99588 * 12 11 10 14 14 C 1.53239 * 109.33877 * 172.74775 * 13 12 11 15 15 N 1.47079 * 108.52428 * 53.82613 * 14 13 12 16 16 C 1.36942 * 120.88054 * 128.79405 * 15 14 13 17 17 H 1.07994 * 119.99802 * 207.49584 * 16 15 14 18 18 C 1.38811 * 119.99601 * 27.49787 * 16 15 14 19 19 N 1.31613 * 120.00224 * 7.24437 * 18 16 15 20 20 Si 1.86803 * 119.99574 * 187.24797 * 18 16 15 21 21 H 1.48497 * 109.47239 * 89.99859 * 20 18 16 22 22 H 1.48499 * 109.47177 * 209.99991 * 20 18 16 23 23 H 1.48502 * 109.47303 * 329.99910 * 20 18 16 24 24 C 1.47075 * 118.24015 * 308.81895 * 15 14 13 25 25 C 1.46903 * 110.99851 * 45.69260 * 12 11 10 26 26 N 1.35533 * 125.56384 * 180.34849 * 2 1 3 27 27 C 1.46502 * 125.68056 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47282 * 89.98046 * 1 2 3 29 29 H 1.08998 * 109.46900 * 209.97501 * 1 2 3 30 30 H 1.08996 * 109.47528 * 329.97767 * 1 2 3 31 31 H 1.08003 * 126.06825 * 0.06458 * 3 2 1 32 32 H 1.07996 * 126.45935 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46724 * 274.00892 * 9 8 6 34 34 H 1.09001 * 109.46952 * 34.00533 * 9 8 6 35 35 H 1.08997 * 109.47107 * 154.00574 * 9 8 6 36 36 H 1.09000 * 109.47476 * 149.99811 * 10 8 6 37 37 H 1.09010 * 109.47090 * 29.99931 * 10 8 6 38 38 H 1.09000 * 109.47334 * 59.99346 * 11 10 8 39 39 H 1.09002 * 109.46370 * 299.99778 * 11 10 8 40 40 H 1.09000 * 109.49409 * 52.78612 * 13 12 11 41 41 H 1.08999 * 109.48780 * 292.70146 * 13 12 11 42 42 H 1.08995 * 109.62864 * 173.54118 * 14 13 12 43 43 H 1.09003 * 109.62793 * 293.92628 * 14 13 12 44 44 H 0.97010 * 119.99754 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.63164 * 170.89031 * 24 15 14 46 46 H 1.09005 * 109.63052 * 291.47267 * 24 15 14 47 47 H 1.09001 * 109.49315 * 67.29955 * 25 12 11 48 48 H 1.08997 * 109.51328 * 307.22831 * 25 12 11 49 49 H 1.08994 * 109.47205 * 274.74530 * 27 26 2 50 50 H 1.09000 * 109.47189 * 34.73768 * 27 26 2 51 51 H 1.09001 * 109.47384 * 154.73671 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 -0.0006 5 6 3.6122 -0.7019 -0.0004 6 6 4.7860 -1.5815 -0.0003 7 8 4.6477 -2.7808 -0.1535 8 7 6.0177 -1.0614 0.1695 9 6 6.1757 0.3616 0.4796 10 6 7.1987 -1.9192 0.0439 11 6 7.5421 -2.5176 1.4095 12 7 8.7259 -3.3781 1.2834 13 6 9.2274 -3.7804 2.6043 14 6 10.3432 -4.8161 2.4296 15 7 11.3583 -4.2607 1.5217 16 6 12.6832 -4.2550 1.8678 17 1 13.3434 -3.5015 1.4645 18 6 13.1775 -5.2178 2.7370 19 7 12.4107 -6.2180 3.1162 20 14 14.9312 -5.0938 3.3686 21 1 14.9496 -4.3052 4.6268 22 1 15.4605 -6.4563 3.6305 23 1 15.7776 -4.4212 2.3505 24 6 10.9126 -3.7110 0.2323 25 6 9.7743 -2.7188 0.4935 26 7 2.2953 -1.1025 -0.0067 27 6 1.8243 -2.4897 -0.0157 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5141 31 1 1.9545 2.1269 0.0010 32 1 4.5024 1.3092 -0.0004 33 1 6.1917 0.9357 -0.4468 34 1 5.3419 0.6934 1.0983 35 1 7.1110 0.5145 1.0181 36 1 8.0407 -1.3278 -0.3158 37 1 6.9907 -2.7226 -0.6629 38 1 6.7000 -3.1089 1.7692 39 1 7.7500 -1.7142 2.1162 40 1 8.4143 -4.2162 3.1849 41 1 9.6199 -2.9073 3.1256 42 1 10.7964 -5.0327 3.3969 43 1 9.9302 -5.7314 2.0056 44 1 12.7561 -6.8907 3.7239 45 1 11.7422 -3.1969 -0.2530 46 1 10.5548 -4.5188 -0.4061 47 1 10.1592 -1.8605 1.0443 48 1 9.3581 -2.3843 -0.4567 49 1 1.6266 -2.8129 1.0063 50 1 0.9080 -2.5585 -0.6020 51 1 2.5876 -3.1298 -0.4580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713741663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:12:11 Heat of formation + Delta-G solvation = 75.522325 kcal Electronic energy + Delta-G solvation = -29209.786112 eV Core-core repulsion = 25340.159028 eV Total energy + Delta-G solvation = -3869.627084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.80448 -39.55756 -38.06886 -36.04176 -34.46773 -33.05569 -32.18216 -31.35956 -30.25844 -29.12442 -27.52130 -27.03530 -26.44546 -25.49289 -23.59326 -22.46472 -21.84183 -21.22897 -20.01908 -19.28370 -19.01647 -17.18725 -16.92089 -16.37963 -16.13445 -15.73074 -15.29362 -14.84909 -14.54429 -14.37887 -14.19129 -13.90532 -13.75531 -13.52039 -13.45101 -13.36440 -13.28757 -13.20912 -13.15264 -12.87630 -12.55858 -12.27771 -12.21316 -12.19255 -11.82925 -11.37165 -11.35710 -11.03147 -10.85820 -10.68523 -10.44212 -10.25205 -10.01225 -9.96790 -9.72469 -9.62361 -9.00703 -8.78755 -8.48195 -8.28363 -7.74853 -6.60649 -5.71959 -3.19120 1.25781 2.31895 2.44034 3.03850 3.21050 3.38999 3.45050 3.46791 4.30698 4.48922 4.50471 4.54754 4.57233 4.78585 4.89971 4.96746 5.03841 5.09765 5.12269 5.16167 5.24940 5.30725 5.37351 5.43848 5.45805 5.48585 5.49396 5.59455 5.78869 5.84972 5.90498 5.95158 6.01420 6.08754 6.16641 6.31285 6.35798 6.42632 6.57668 6.59184 6.75698 6.76846 6.95027 6.97309 7.20615 7.35595 7.65704 7.73694 7.78154 7.89579 8.03039 8.50302 9.26551 9.88228 10.46403 11.34496 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.033508 B = 0.002036 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.424799 B =13749.963158 C =14113.462783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.039 3.961 3 C -0.209 4.209 4 C -0.157 4.157 5 C -0.049 4.049 6 C 0.585 3.415 7 O -0.543 6.543 8 N -0.602 5.602 9 C 0.061 3.939 10 C 0.117 3.883 11 C 0.044 3.956 12 N -0.529 5.529 13 C 0.037 3.963 14 C 0.173 3.827 15 N -0.597 5.597 16 C -0.246 4.246 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.909 5.909 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.148 3.852 25 C 0.036 3.964 26 N -0.407 5.407 27 C 0.059 3.941 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.163 0.837 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.102 0.898 43 H 0.024 0.976 44 H 0.254 0.746 45 H 0.055 0.945 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.214 16.057 -6.122 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.233 4.233 4 C -0.183 4.183 5 C -0.162 4.162 6 C 0.375 3.625 7 O -0.422 6.422 8 N -0.334 5.334 9 C -0.082 4.082 10 C -0.005 4.005 11 C -0.085 4.085 12 N -0.254 5.254 13 C -0.092 4.092 14 C 0.047 3.953 15 N -0.321 5.321 16 C -0.376 4.376 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.021 3.979 25 C -0.093 4.093 26 N -0.080 5.080 27 C -0.082 4.082 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.159 0.841 32 H 0.180 0.820 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.120 0.880 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -23.426 14.451 -6.350 28.248 hybrid contribution 1.080 0.843 0.886 1.631 sum -22.347 15.293 -5.464 27.625 Atomic orbital electron populations 1.20380 0.87845 1.03457 1.02820 1.20597 0.93781 0.85948 1.07486 1.20669 0.92653 0.97675 1.12301 1.22159 0.98401 0.92397 1.05338 1.19988 0.84247 0.93649 1.18347 1.17028 0.82145 0.86577 0.76736 1.90788 1.85527 1.15043 1.50838 1.47461 1.05536 1.10190 1.70235 1.22515 1.03789 0.80770 1.01079 1.21754 0.85628 0.94564 0.98574 1.22412 0.94982 0.95321 0.95826 1.62032 1.05611 1.40041 1.17738 1.22932 0.98741 0.99585 0.87950 1.21051 0.85870 0.91013 0.97330 1.44119 1.03465 1.70854 1.13620 1.19241 0.85029 1.08091 1.25207 0.91631 1.25116 0.97862 0.95392 1.01615 1.69922 1.35348 1.13036 1.37159 0.86206 0.84453 0.76805 0.78776 1.21573 1.21658 1.20525 1.20987 0.93341 0.94261 0.89267 1.22759 0.93376 0.96731 0.96477 1.43770 1.04598 1.06633 1.53035 1.22344 1.02320 0.79930 1.03648 0.90791 0.91631 0.89842 0.84118 0.82011 0.91884 0.89222 0.90848 0.89831 0.88851 0.90892 0.95629 0.92272 0.95834 0.88007 0.95770 0.93600 0.92704 0.95597 0.95523 0.91698 0.90728 0.90131 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 9.89 36.01 0.36 -0.11 16 2 C 0.04 0.35 6.87 -81.95 -0.56 -0.22 16 3 C -0.21 -1.84 10.71 -39.98 -0.43 -2.27 16 4 C -0.16 -1.51 8.72 -39.12 -0.34 -1.85 16 5 C -0.05 -0.59 6.71 -81.98 -0.55 -1.14 16 6 C 0.59 8.10 7.62 -12.85 -0.10 8.01 16 7 O -0.54 -9.12 14.21 5.19 0.07 -9.04 16 8 N -0.60 -7.23 2.87 -183.12 -0.53 -7.76 16 9 C 0.06 0.50 8.67 59.85 0.52 1.02 16 10 C 0.12 1.57 4.60 -4.04 -0.02 1.55 16 11 C 0.04 0.69 5.59 -3.83 -0.02 0.67 16 12 N -0.53 -9.97 4.78 -234.32 -1.12 -11.09 16 13 C 0.04 0.77 5.58 -3.70 -0.02 0.75 16 14 C 0.17 4.36 5.40 -3.60 -0.02 4.34 16 15 N -0.60 -15.50 3.05 -172.01 -0.52 -16.02 16 16 C -0.25 -6.85 9.67 -15.06 -0.15 -7.00 16 17 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 18 C 0.00 -0.07 5.17 -17.43 -0.09 -0.16 16 19 N -0.91 -26.71 10.63 55.49 0.59 -26.12 16 20 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.15 3.22 6.69 -3.60 -0.02 3.19 16 25 C 0.04 0.65 5.04 -3.70 -0.02 0.63 16 26 N -0.41 -4.38 3.16 -115.62 -0.37 -4.74 16 27 C 0.06 0.53 10.30 59.85 0.62 1.14 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 7.77 -51.93 -0.40 -0.10 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 32 H 0.16 1.16 4.46 -52.49 -0.23 0.93 16 33 H 0.06 0.41 7.41 -51.93 -0.38 0.03 16 34 H 0.09 0.67 5.20 -51.93 -0.27 0.40 16 35 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 36 H 0.08 1.00 6.11 -51.93 -0.32 0.68 16 37 H 0.09 1.43 7.51 -51.92 -0.39 1.04 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 40 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 2.82 5.84 -51.93 -0.30 2.52 16 43 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.05 1.13 7.95 -51.93 -0.41 0.71 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.99 5.73 -51.93 -0.30 0.69 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.50 7.83 -51.93 -0.41 0.10 16 51 H 0.11 1.25 5.95 -51.93 -0.31 0.94 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -33.77 392.14 -10.17 -43.94 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.34 Total: -0.57 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.85 Total: 8.57 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.95 Total: -65.73 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.77 -10.17 -43.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713741663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.466 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds