Wall clock time and date at job start Sat Apr 11 2020 04:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30447 * 125.98503 * 2 1 4 4 N 1.39940 * 108.89382 * 179.78621 * 3 2 1 5 5 C 1.46495 * 125.75291 * 180.30176 * 4 3 2 6 6 C 1.53004 * 109.46969 * 255.15024 * 5 4 3 7 7 C 1.53002 * 109.47402 * 15.14704 * 5 4 3 8 8 C 1.52999 * 109.47202 * 135.15143 * 5 4 3 9 9 C 1.34262 * 108.48994 * 0.42634 * 4 3 2 10 10 C 1.38040 * 107.41796 * 359.58781 * 9 4 3 11 11 C 1.47424 * 126.41473 * 180.28599 * 10 9 4 12 12 O 1.21605 * 120.00056 * 146.63107 * 11 10 9 13 13 N 1.34781 * 119.99794 * 326.62461 * 11 10 9 14 14 C 1.47418 * 125.64836 * 4.32929 * 13 11 10 15 15 C 1.54909 * 104.83029 * 204.08955 * 14 13 11 16 16 H 1.08999 * 111.00902 * 81.10351 * 15 14 13 17 17 N 1.46504 * 111.00369 * 204.91586 * 15 14 13 18 18 C 1.36938 * 119.99658 * 273.54527 * 17 15 14 19 19 H 1.07998 * 120.00046 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99751 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00056 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47289 * 60.00095 * 22 20 18 24 24 H 1.48508 * 109.47008 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47180 * 299.99820 * 22 20 18 26 26 C 1.55156 * 101.58043 * 322.98690 * 15 14 13 27 27 C 1.47023 * 125.64442 * 184.01372 * 13 11 10 28 28 H 1.09002 * 109.88235 * 298.39196 * 27 13 11 29 29 C 1.52998 * 109.88453 * 59.56651 * 27 13 11 30 30 H 1.09002 * 109.46887 * 269.95385 * 1 2 3 31 31 H 1.08996 * 109.47186 * 29.94983 * 1 2 3 32 32 H 1.09003 * 109.46991 * 149.95793 * 1 2 3 33 33 H 1.08993 * 109.47538 * 59.99924 * 6 5 4 34 34 H 1.08996 * 109.47081 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.46966 * 300.00016 * 6 5 4 36 36 H 1.08997 * 109.46821 * 60.00194 * 7 5 4 37 37 H 1.09005 * 109.46979 * 179.97438 * 7 5 4 38 38 H 1.08993 * 109.46972 * 299.99995 * 7 5 4 39 39 H 1.09004 * 109.47245 * 59.99670 * 8 5 4 40 40 H 1.09005 * 109.47488 * 179.97438 * 8 5 4 41 41 H 1.08997 * 109.47033 * 299.99813 * 8 5 4 42 42 H 1.08004 * 126.28555 * 179.84807 * 9 4 3 43 43 H 1.08997 * 110.36440 * 322.92315 * 14 13 11 44 44 H 1.08996 * 110.37064 * 85.13638 * 14 13 11 45 45 H 0.96996 * 120.00121 * 93.54410 * 17 15 14 46 46 H 0.97001 * 119.99783 * 180.02562 * 21 20 18 47 47 H 1.09002 * 110.72285 * 153.86916 * 26 15 14 48 48 H 1.08999 * 110.72011 * 276.96314 * 26 15 14 49 49 H 1.08992 * 109.47258 * 58.54120 * 29 27 13 50 50 H 1.08997 * 109.47131 * 178.54566 * 29 27 13 51 51 H 1.08999 * 109.46796 * 298.53793 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 0.0049 5 6 4.7787 1.5291 0.0128 6 6 5.4148 1.5464 -1.3786 7 6 4.3425 2.9458 0.3917 8 6 5.7982 1.0192 1.0333 9 6 3.6439 -0.6979 -0.0015 10 6 2.3373 -1.1432 -0.0010 11 6 1.8917 -2.5485 -0.0009 12 8 0.8697 -2.8622 0.5788 13 7 2.6169 -3.4855 -0.6433 14 6 3.9146 -3.2625 -1.3061 15 6 4.0164 -4.3867 -2.3670 16 1 3.4544 -4.1290 -3.2647 17 7 5.4151 -4.6771 -2.6919 18 6 6.0585 -3.9508 -3.6582 19 1 5.5346 -3.1643 -4.1811 20 6 7.3839 -4.2255 -3.9657 21 7 8.0224 -5.1838 -3.3281 22 14 8.2614 -3.2353 -5.2844 23 1 8.2720 -1.8007 -4.9013 24 1 9.6581 -3.7210 -5.4209 25 1 7.5520 -3.3968 -6.5789 26 6 3.3596 -5.5786 -1.6217 27 6 2.2477 -4.9007 -0.7934 28 1 2.1745 -5.3707 0.1873 29 6 0.9113 -5.0146 -1.5295 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3633 0.8904 -0.5130 32 1 -0.3633 -0.8896 -0.5145 33 1 4.6886 1.9096 -2.1057 34 1 6.2837 2.2044 -1.3727 35 1 5.7255 0.5371 -1.6487 36 1 3.8893 2.9335 1.3830 37 1 5.2114 3.6040 0.3980 38 1 3.6163 3.3090 -0.3353 39 1 6.1090 0.0099 0.7633 40 1 6.6672 1.6772 1.0389 41 1 5.3450 1.0068 2.0245 42 1 4.5299 -1.3157 -0.0022 43 1 3.9318 -2.2845 -1.7871 44 1 4.7279 -3.3442 -0.5851 45 1 5.8854 -5.3837 -2.2225 46 1 8.9488 -5.3755 -3.5428 47 1 2.9362 -6.2905 -2.3303 48 1 4.0809 -6.0696 -0.9684 49 1 0.9923 -4.5367 -2.5057 50 1 0.6569 -6.0664 -1.6599 51 1 0.1327 -4.5220 -0.9472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988825708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:06:46 Heat of formation + Delta-G solvation = 46.411552 kcal Electronic energy + Delta-G solvation = -30443.075426 eV Core-core repulsion = 26572.186004 eV Total energy + Delta-G solvation = -3870.889422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51991 -39.58050 -37.40708 -36.72663 -34.18890 -32.28649 -31.86617 -31.35167 -29.72947 -28.35271 -27.86779 -27.65539 -27.31795 -25.49935 -24.16203 -23.22020 -21.61424 -20.55519 -20.28276 -19.25367 -18.41132 -17.35172 -16.93795 -16.29184 -15.71872 -15.30530 -15.18202 -14.58201 -14.36673 -14.24469 -14.14082 -13.78351 -13.45180 -13.20592 -13.11916 -12.99858 -12.88127 -12.77763 -12.47297 -12.41548 -12.32389 -12.29947 -12.10325 -11.96926 -11.82393 -11.75871 -11.37059 -11.33047 -11.20456 -10.99440 -10.77808 -10.67090 -10.60963 -10.32656 -10.02429 -9.81391 -9.54239 -9.24571 -9.05049 -8.55091 -8.22982 -7.13710 -5.90463 -3.21270 1.69629 2.27883 2.32816 3.28708 3.33883 3.40247 3.40425 3.59421 4.16572 4.46510 4.48214 4.59062 4.69521 4.71749 4.89013 5.13979 5.15039 5.23829 5.26993 5.29398 5.39399 5.41509 5.46334 5.49740 5.52010 5.53154 5.59167 5.64531 5.65583 5.72641 5.77708 5.85037 5.85729 5.87758 5.96398 5.98576 6.05550 6.11822 6.14206 6.22111 6.31372 6.45152 6.54913 6.60562 6.73612 6.85508 6.94356 7.57651 7.69714 7.93099 8.27184 8.56605 9.39187 9.93316 10.28615 11.31392 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008358 B = 0.004770 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3349.146849 B = 5868.864464 C = 8545.881857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.121 3.879 3 N -0.301 5.301 4 N -0.349 5.349 5 C 0.178 3.822 6 C -0.163 4.163 7 C -0.141 4.141 8 C -0.163 4.163 9 C 0.105 3.895 10 C -0.283 4.283 11 C 0.608 3.392 12 O -0.552 6.552 13 N -0.607 5.607 14 C 0.073 3.927 15 C 0.174 3.826 16 H 0.064 0.936 17 N -0.713 5.713 18 C -0.248 4.248 19 H 0.071 0.929 20 C -0.006 4.006 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C -0.137 4.137 27 C 0.141 3.859 28 H 0.070 0.930 29 C -0.160 4.160 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.182 0.818 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 10.883 7.603 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 N -0.122 5.122 4 N -0.128 5.128 5 C 0.095 3.905 6 C -0.221 4.221 7 C -0.199 4.199 8 C -0.221 4.221 9 C -0.046 4.046 10 C -0.297 4.297 11 C 0.398 3.602 12 O -0.431 6.431 13 N -0.340 5.340 14 C -0.054 4.054 15 C 0.062 3.938 16 H 0.082 0.918 17 N -0.353 5.353 18 C -0.379 4.379 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.736 3.264 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.175 4.175 27 C 0.038 3.962 28 H 0.088 0.912 29 C -0.218 4.218 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.199 0.801 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.222 0.778 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.613 12.250 7.789 16.879 hybrid contribution 1.066 -0.605 -0.606 1.367 sum -7.547 11.644 7.183 15.625 Atomic orbital electron populations 1.20167 0.86136 1.03030 1.03283 1.22324 0.96877 0.88897 0.96486 1.77049 0.86134 1.22593 1.26453 1.48663 1.05344 1.04281 1.54479 1.20851 0.81926 0.90368 0.97328 1.22305 1.01291 1.04061 0.94485 1.21898 1.02107 0.92922 1.02967 1.22287 0.98451 1.02893 0.98476 1.23216 0.99040 0.85296 0.97030 1.20124 0.92169 0.94215 1.23220 1.16917 0.82608 0.83109 0.77584 1.90706 1.25627 1.81724 1.45020 1.48448 1.22313 1.09021 1.54253 1.23539 0.83345 1.02196 0.96271 1.21273 0.87554 0.90988 0.94022 0.91838 1.42317 1.06684 1.41723 1.44571 1.19178 0.93852 1.12553 1.12314 0.91135 1.24740 0.96936 0.98795 0.99839 1.69646 1.11220 1.32693 1.44082 0.86302 0.78898 0.79415 0.81748 1.21237 1.21604 1.21125 1.22981 0.96989 0.98559 0.98993 1.21449 0.94887 0.81122 0.98765 0.91199 1.22123 0.97295 1.01728 1.00674 0.90230 0.91230 0.90065 0.91509 0.90186 0.90982 0.91715 0.90904 0.90953 0.91107 0.89780 0.91521 0.80134 0.91362 0.91587 0.77837 0.93272 0.90158 0.90604 0.92482 0.92013 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 9.86 36.01 0.36 -0.49 16 2 C 0.12 1.84 7.26 -82.02 -0.60 1.24 16 3 N -0.30 -4.45 11.56 33.90 0.39 -4.05 16 4 N -0.35 -4.65 3.41 -48.11 -0.16 -4.82 16 5 C 0.18 1.84 1.23 -131.82 -0.16 1.68 16 6 C -0.16 -1.66 8.72 37.16 0.32 -1.34 16 7 C -0.14 -1.28 8.08 37.16 0.30 -0.98 16 8 C -0.16 -1.44 8.28 37.16 0.31 -1.14 16 9 C 0.11 1.50 8.64 -16.56 -0.14 1.35 16 10 C -0.28 -4.48 5.69 -105.07 -0.60 -5.08 16 11 C 0.61 10.41 7.35 -12.52 -0.09 10.32 16 12 O -0.55 -10.45 15.14 5.27 0.08 -10.37 16 13 N -0.61 -9.81 3.08 -164.27 -0.51 -10.32 16 14 C 0.07 1.21 5.04 -2.53 -0.01 1.20 16 15 C 0.17 3.18 3.69 -65.78 -0.24 2.94 16 16 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 17 N -0.71 -16.26 5.28 -51.35 -0.27 -16.53 16 18 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.93 -26.31 13.06 55.49 0.72 -25.58 16 22 Si 0.91 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.14 -2.11 6.11 -24.89 -0.15 -2.26 16 27 C 0.14 2.12 3.48 -66.95 -0.23 1.89 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 C -0.16 -2.22 9.06 37.16 0.34 -1.88 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.07 7.57 -51.93 -0.39 0.67 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 39 H 0.07 0.66 7.34 -51.93 -0.38 0.28 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.18 2.38 5.87 -52.48 -0.31 2.07 16 43 H 0.07 1.16 6.55 -51.93 -0.34 0.82 16 44 H 0.07 1.13 7.70 -51.93 -0.40 0.73 16 45 H 0.39 9.42 7.71 -40.82 -0.31 9.11 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 48 H 0.08 1.18 7.99 -51.93 -0.42 0.76 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.07 1.00 6.87 -51.93 -0.36 0.65 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -30.51 405.80 -8.28 -38.79 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -8.77 Total: 10.03 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.85 Total: 0.70 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.18 Total: -61.31 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.51 -8.28 -38.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988825708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.205 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds