Wall clock time and date at job start Sat Apr 11 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30844 * 125.89911 * 2 1 4 4 N 1.40086 * 108.20537 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03748 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92189 * 0.25805 * 4 3 2 7 7 C 1.50703 * 126.12243 * 179.73941 * 6 4 3 8 8 C 1.35315 * 107.74973 * 359.58119 * 6 4 3 9 9 C 1.50696 * 126.03898 * 180.16094 * 8 6 4 10 10 C 1.50701 * 109.46802 * 270.27999 * 9 8 6 11 11 O 1.21274 * 120.00318 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99992 * 180.02562 * 10 9 8 13 13 C 1.46929 * 120.62678 * 359.71783 * 12 10 9 14 14 C 1.53627 * 108.54160 * 126.37405 * 13 12 10 15 15 C 1.53035 * 109.24344 * 54.85387 * 14 13 12 16 16 H 1.09000 * 109.46371 * 58.53414 * 15 14 13 17 17 N 1.46502 * 109.45096 * 178.50078 * 15 14 13 18 18 C 1.36931 * 119.99634 * 275.06113 * 17 15 14 19 19 H 1.08002 * 120.00602 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99901 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00066 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00191 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47019 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46796 * 120.00181 * 22 20 18 25 25 H 1.48491 * 109.47332 * 240.00128 * 22 20 18 26 26 C 1.53047 * 109.53941 * 298.51263 * 15 14 13 27 27 H 1.09001 * 109.49900 * 301.41475 * 26 15 14 28 28 C 1.52998 * 109.52400 * 181.33154 * 26 15 14 29 29 C 1.46917 * 120.63300 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46772 * 90.02202 * 1 2 3 31 31 H 1.08995 * 109.47249 * 210.03197 * 1 2 3 32 32 H 1.09003 * 109.46606 * 330.02900 * 1 2 3 33 33 H 1.09002 * 109.47391 * 90.01945 * 5 4 3 34 34 H 1.09001 * 109.46813 * 330.02001 * 5 4 3 35 35 H 1.09004 * 109.47041 * 210.02128 * 5 4 3 36 36 H 1.08997 * 109.47375 * 90.02444 * 7 6 4 37 37 H 1.09002 * 109.46961 * 210.02784 * 7 6 4 38 38 H 1.09001 * 109.47443 * 330.02123 * 7 6 4 39 39 H 1.08993 * 109.47888 * 30.28097 * 9 8 6 40 40 H 1.09007 * 109.47255 * 150.28618 * 9 8 6 41 41 H 1.08997 * 109.58933 * 246.20383 * 13 12 10 42 42 H 1.08995 * 109.58884 * 6.63156 * 13 12 10 43 43 H 1.09002 * 109.63198 * 294.86311 * 14 13 12 44 44 H 1.08996 * 109.45732 * 174.74164 * 14 13 12 45 45 H 0.96996 * 119.99915 * 95.06236 * 17 15 14 46 46 H 0.96999 * 120.00014 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.46965 * 300.14392 * 28 26 15 48 48 H 1.08997 * 109.47063 * 60.14751 * 28 26 15 49 49 H 1.09003 * 109.47146 * 180.14949 * 28 26 15 50 50 H 1.09004 * 109.58556 * 353.37235 * 29 12 10 51 51 H 1.09003 * 109.59078 * 113.64993 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7900 1.5008 0.0013 6 6 3.6142 -0.7153 -0.0048 7 6 4.8350 -1.5989 -0.0118 8 6 2.3271 -1.1330 0.0007 9 6 1.8600 -2.5657 0.0010 10 6 1.7042 -3.0435 -1.4198 11 8 1.9489 -2.2946 -2.3417 12 7 1.2929 -4.3032 -1.6659 13 6 0.9985 -5.2241 -0.5595 14 6 -0.4184 -5.7850 -0.7545 15 6 -0.5234 -6.4182 -2.1437 16 1 0.2218 -7.2078 -2.2403 17 7 -1.8621 -6.9863 -2.3210 18 6 -2.1355 -8.2490 -1.8672 19 1 -1.3645 -8.8260 -1.3783 20 6 -3.4041 -8.7871 -2.0347 21 7 -4.3440 -8.0838 -2.6301 22 14 -3.7770 -10.5099 -1.4163 23 1 -2.5599 -11.0850 -0.7893 24 1 -4.8693 -10.4497 -0.4121 25 1 -4.1984 -11.3643 -2.5554 26 6 -0.2768 -5.3510 -3.2127 27 1 -1.0065 -4.5490 -3.1011 28 6 -0.4146 -5.9773 -4.6018 29 6 1.1368 -4.7837 -3.0455 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8896 0.5143 32 1 -0.3633 0.8903 0.5134 33 1 5.0826 1.7153 1.0292 34 1 4.5565 2.4335 -0.5122 35 1 5.6096 0.9984 -0.5125 36 1 5.1320 -1.8164 1.0141 37 1 4.6063 -2.5306 -0.5292 38 1 5.6499 -1.0887 -0.5256 39 1 2.5934 -3.1870 0.5148 40 1 0.9011 -2.6352 0.5148 41 1 1.7209 -6.0403 -0.5613 42 1 1.0533 -4.6871 0.3874 43 1 -1.1467 -4.9789 -0.6661 44 1 -0.6177 -6.5403 0.0056 45 1 -2.5547 -6.4680 -2.7598 46 1 -5.2303 -8.4600 -2.7474 47 1 0.3145 -6.7800 -4.7124 48 1 -1.4202 -6.3809 -4.7202 49 1 -0.2363 -5.2171 -5.3624 50 1 1.2829 -3.9559 -3.7394 51 1 1.8719 -5.5630 -3.2465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036123712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:11 Heat of formation + Delta-G solvation = 41.872601 kcal Electronic energy + Delta-G solvation = -29680.995990 eV Core-core repulsion = 25809.909745 eV Total energy + Delta-G solvation = -3871.086245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53264 -39.87758 -37.56254 -34.54635 -34.43546 -33.27719 -32.66333 -31.41931 -30.02480 -29.47807 -29.17640 -26.84535 -25.99731 -25.14333 -24.38146 -22.74101 -21.62692 -20.33315 -19.64804 -19.52085 -18.61837 -17.12947 -16.97490 -16.56568 -15.83544 -15.54778 -15.23545 -14.90402 -14.10240 -14.08567 -14.07782 -13.74934 -13.68977 -13.42140 -13.40549 -13.27109 -13.07015 -12.94110 -12.76289 -12.46278 -12.35830 -12.21129 -12.04405 -11.99187 -11.79119 -11.59626 -11.51836 -11.14315 -10.94830 -10.79977 -10.61179 -10.52403 -10.37921 -10.16556 -9.75006 -9.61416 -9.59779 -9.10923 -8.90988 -8.38189 -8.32471 -6.96289 -5.77977 -3.06481 1.75283 2.37044 2.60096 2.82853 3.30603 3.41504 3.47124 3.49518 4.29147 4.44758 4.57092 4.75235 4.78884 4.83231 4.89772 5.02230 5.06928 5.11235 5.17812 5.21556 5.29398 5.33388 5.34532 5.40327 5.46394 5.54704 5.56710 5.64421 5.67001 5.71190 5.82712 5.86476 5.97447 6.00971 6.08500 6.11657 6.17723 6.32478 6.42326 6.45902 6.56521 6.63716 6.69026 6.83464 6.92409 6.95289 7.07830 7.62907 7.67783 7.68597 8.39679 8.40342 9.51788 10.09811 10.44536 11.44572 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.002428 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.028197 B =11527.811245 C =11691.300147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.094 3.906 3 N -0.302 5.302 4 N -0.377 5.377 5 C 0.104 3.896 6 C 0.097 3.903 7 C -0.091 4.091 8 C -0.216 4.216 9 C -0.059 4.059 10 C 0.514 3.486 11 O -0.541 6.541 12 N -0.610 5.610 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.109 4.109 27 H 0.069 0.931 28 C -0.136 4.136 29 C 0.121 3.879 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.050 0.950 48 H 0.073 0.927 49 H 0.042 0.958 50 H 0.086 0.914 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.984 14.496 6.873 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.124 5.124 4 N -0.159 5.159 5 C -0.038 4.038 6 C -0.031 4.031 7 C -0.150 4.150 8 C -0.227 4.227 9 C -0.100 4.100 10 C 0.302 3.698 11 O -0.418 6.418 12 N -0.343 5.343 13 C -0.017 4.017 14 C -0.193 4.193 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.129 4.129 27 H 0.087 0.913 28 C -0.194 4.194 29 C -0.002 4.002 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.290 16.093 6.443 25.934 hybrid contribution -0.539 -1.692 0.256 1.794 sum 18.750 14.401 6.699 24.573 Atomic orbital electron populations 1.20197 0.86758 1.03068 1.03307 1.22127 0.96753 0.90158 0.98212 1.77290 0.86047 1.22422 1.26642 1.48175 1.05531 1.04010 1.58167 1.21775 0.84035 0.94928 1.03014 1.20717 0.96720 0.84556 1.01067 1.20447 0.93005 0.98525 1.02988 1.19024 0.91276 0.94687 1.17712 1.19926 1.03268 0.92268 0.94533 1.20663 0.76652 0.81010 0.91521 1.90666 1.50460 1.54307 1.46351 1.48205 1.66409 1.11989 1.07715 1.21956 0.98258 0.92714 0.88771 1.22758 0.93870 1.00774 1.01889 1.20189 0.89447 0.92546 0.90434 0.93510 1.42423 1.07434 1.15923 1.70343 1.19253 0.95390 0.91368 1.30727 0.91201 1.24731 0.96295 0.98367 1.01576 1.69669 1.03121 1.36991 1.48225 0.86161 0.77798 0.84510 0.77973 1.20609 1.21962 1.21958 1.21739 0.95683 0.98657 0.96833 0.91296 1.21659 1.03537 0.99555 0.94643 1.21661 0.96824 0.99116 0.82589 0.90278 0.90450 0.90987 0.90969 0.89427 0.89745 0.90195 0.89755 0.91164 0.88743 0.88181 0.91558 0.90426 0.92116 0.90671 0.78229 0.93589 0.93122 0.90808 0.93899 0.89596 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.26 36.01 0.37 -0.47 16 2 C 0.09 1.28 7.22 -82.40 -0.59 0.69 16 3 N -0.30 -4.32 12.58 33.67 0.42 -3.90 16 4 N -0.38 -4.45 4.01 -63.88 -0.26 -4.71 16 5 C 0.10 0.72 11.28 59.85 0.67 1.40 16 6 C 0.10 1.11 6.93 -82.26 -0.57 0.54 16 7 C -0.09 -0.70 9.72 36.01 0.35 -0.35 16 8 C -0.22 -2.75 4.59 -105.06 -0.48 -3.23 16 9 C -0.06 -0.65 3.95 -29.04 -0.11 -0.77 16 10 C 0.51 7.27 7.69 -10.98 -0.08 7.18 16 11 O -0.54 -9.66 15.45 5.56 0.09 -9.58 16 12 N -0.61 -8.29 2.97 -172.48 -0.51 -8.80 16 13 C 0.11 1.29 6.37 -3.48 -0.02 1.26 16 14 C -0.15 -2.41 5.67 -26.39 -0.15 -2.56 16 15 C 0.18 3.39 2.19 -67.89 -0.15 3.24 16 16 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 17 N -0.72 -17.02 4.41 -53.38 -0.24 -17.25 16 18 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 22 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C -0.11 -1.79 2.46 -90.48 -0.22 -2.01 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 C -0.14 -2.22 9.03 37.16 0.34 -1.89 16 29 C 0.12 1.76 5.72 -3.69 -0.02 1.74 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.75 7.26 -51.93 -0.38 0.37 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.40 7.04 -51.93 -0.37 0.04 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.69 7.79 -51.93 -0.40 0.28 16 38 H 0.07 0.43 7.08 -51.93 -0.37 0.06 16 39 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 40 H 0.10 0.98 6.82 -51.92 -0.35 0.63 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.74 5.93 -51.93 -0.31 0.44 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.38 9.85 7.50 -40.82 -0.31 9.54 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 1.41 7.37 -51.93 -0.38 1.03 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -34.42 405.14 -8.28 -42.70 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.66 Total: 7.45 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.93 Total: -2.08 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.14 Total: -61.40 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.42 -8.28 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.568 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds