Wall clock time and date at job start Sat Apr 11 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39875 * 125.89985 * 2 1 4 4 C 1.35313 * 107.92254 * 179.71664 * 3 2 1 5 5 C 1.50694 * 126.12717 * 180.26691 * 4 3 2 6 6 N 1.34951 * 107.74191 * 0.41851 * 4 3 2 7 7 C 1.46505 * 126.03199 * 179.84303 * 6 4 3 8 8 C 1.52994 * 109.46934 * 269.71708 * 7 6 4 9 9 C 1.52998 * 109.47305 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47565 * 179.97438 * 9 8 7 11 11 O 1.21286 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00550 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99795 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00541 * 179.97438 * 12 10 9 15 15 C 1.53784 * 113.61569 * 240.00166 * 14 12 10 16 16 C 1.53787 * 87.07923 * 220.01663 * 15 14 12 17 17 N 1.46501 * 113.61128 * 139.98386 * 16 15 14 18 18 C 1.36937 * 119.99940 * 155.00138 * 17 16 15 19 19 H 1.07995 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99758 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99944 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47131 * 59.99556 * 22 20 18 24 24 H 1.48499 * 109.46950 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46857 * 299.99710 * 22 20 18 26 26 C 1.53779 * 113.61581 * 142.50385 * 14 12 10 27 27 N 1.30835 * 125.90293 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47472 * 270.00144 * 1 2 3 29 29 H 1.09007 * 109.47429 * 30.00539 * 1 2 3 30 30 H 1.09004 * 109.47003 * 150.00161 * 1 2 3 31 31 H 1.08002 * 126.03324 * 359.97398 * 3 2 1 32 32 H 1.09003 * 109.46828 * 270.18141 * 5 4 3 33 33 H 1.09002 * 109.47780 * 30.18007 * 5 4 3 34 34 H 1.08995 * 109.47486 * 150.18129 * 5 4 3 35 35 H 1.08999 * 109.47321 * 149.71644 * 7 6 4 36 36 H 1.09005 * 109.46979 * 29.71856 * 7 6 4 37 37 H 1.09005 * 109.47448 * 60.00203 * 8 7 6 38 38 H 1.08999 * 109.47271 * 300.00325 * 8 7 6 39 39 H 1.08999 * 109.47305 * 59.99719 * 9 8 7 40 40 H 1.08999 * 109.47052 * 300.00252 * 9 8 7 41 41 H 1.09004 * 109.46666 * 269.99777 * 13 12 10 42 42 H 1.08999 * 109.47266 * 29.99467 * 13 12 10 43 43 H 1.08995 * 109.47412 * 150.00054 * 13 12 10 44 44 H 1.09002 * 112.90477 * 11.25212 * 14 12 10 45 45 H 1.09004 * 113.61451 * 105.47149 * 15 14 12 46 46 H 1.08994 * 113.61477 * 334.56451 * 15 14 12 47 47 H 1.09000 * 113.61529 * 270.88430 * 16 15 14 48 48 H 0.97005 * 120.00129 * 334.99728 * 17 16 15 49 49 H 0.97007 * 119.99563 * 179.97438 * 21 20 18 50 50 H 1.09006 * 113.61307 * 25.43652 * 26 14 12 51 51 H 1.09007 * 113.61642 * 254.53409 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0064 5 6 4.8349 1.5990 0.0144 6 7 3.6087 -0.6341 0.0009 7 6 4.7899 -1.5007 0.0015 8 6 5.2019 -1.8022 -1.4407 9 6 6.4351 -2.7078 -1.4402 10 6 6.8406 -3.0053 -2.8607 11 8 6.2055 -2.5394 -3.7829 12 7 7.9090 -3.7892 -3.1065 13 6 8.6760 -4.3525 -1.9926 14 6 8.3029 -4.0789 -4.4874 15 6 8.2823 -5.5774 -4.8325 16 6 9.5776 -5.3325 -5.6244 17 7 10.5668 -6.4030 -5.4771 18 6 11.5028 -6.6096 -6.4551 19 1 11.5115 -5.9837 -7.3351 20 6 12.4404 -7.6237 -6.3152 21 7 12.4301 -8.3861 -5.2424 22 14 13.7178 -7.9052 -7.6489 23 1 14.5380 -6.6785 -7.8155 24 1 14.5958 -9.0385 -7.2619 25 1 13.0351 -8.2219 -8.9290 26 6 9.8256 -4.1323 -4.6955 27 7 2.2742 -1.0598 0.0005 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9922 2.1598 -0.0004 32 1 5.1329 1.8162 -1.0114 33 1 4.6057 2.5309 0.5312 34 1 5.6492 1.0890 0.5290 35 1 4.5561 -2.4332 0.5151 36 1 5.6090 -0.9981 0.5159 37 1 5.4358 -0.8697 -1.9544 38 1 4.3828 -2.3048 -1.9551 39 1 6.2009 -3.6403 -0.9267 40 1 7.2544 -2.2056 -0.9256 41 1 9.4742 -3.6637 -1.7160 42 1 8.0165 -4.5063 -1.1384 43 1 9.1079 -5.3066 -2.2945 44 1 7.7842 -3.4559 -5.2161 45 1 7.4378 -5.8703 -5.4564 46 1 8.4158 -6.2266 -3.9672 47 1 9.4074 -5.0521 -6.6640 48 1 10.5588 -6.9654 -4.6868 49 1 13.0851 -9.0950 -5.1449 50 1 10.3810 -4.3865 -3.7926 51 1 10.2272 -3.2585 -5.2087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734600708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:07:24 Heat of formation + Delta-G solvation = 62.772464 kcal Electronic energy + Delta-G solvation = -27899.647334 eV Core-core repulsion = 24029.467375 eV Total energy + Delta-G solvation = -3870.179959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54299 -40.22478 -38.18524 -35.67774 -34.82463 -33.35864 -32.99668 -31.83653 -30.08779 -29.31447 -27.32362 -27.02126 -26.37136 -25.15830 -24.39812 -23.01215 -21.66063 -20.67129 -19.64575 -19.26877 -18.79435 -17.24852 -17.12775 -16.82307 -16.29338 -16.04986 -15.54795 -15.02444 -14.59295 -14.56757 -14.19194 -13.98288 -13.80832 -13.65234 -13.40680 -13.18213 -13.14218 -13.02848 -12.81159 -12.77461 -12.50614 -12.31198 -12.19752 -12.14513 -11.98224 -11.84295 -11.75225 -11.27253 -11.18523 -10.91272 -10.73125 -10.61034 -10.49809 -10.30909 -10.04603 -9.78735 -9.56440 -9.29582 -8.92721 -8.73228 -8.47674 -7.02586 -5.83531 -3.12484 1.60137 2.18731 2.52771 2.60113 3.04259 3.40751 3.45447 3.46219 4.14053 4.25679 4.30316 4.52684 4.55342 4.60589 4.71822 4.82652 4.86874 4.97486 5.03518 5.04736 5.09249 5.12844 5.17453 5.24769 5.32024 5.36132 5.38160 5.41076 5.42066 5.48626 5.54435 5.61311 5.68981 5.71064 5.82517 5.89945 5.93350 5.95869 6.12333 6.24864 6.30625 6.41010 6.45636 6.52627 6.76696 6.78364 6.99767 7.48511 7.52459 7.65205 8.17964 8.34908 9.46314 10.02655 10.37436 11.38714 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.035033 B = 0.001615 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.053212 B =17331.196592 C =17429.724564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.070 3.930 3 C -0.277 4.277 4 C 0.086 3.914 5 C -0.094 4.094 6 N -0.366 5.366 7 C 0.131 3.869 8 C -0.119 4.119 9 C -0.137 4.137 10 C 0.511 3.489 11 O -0.546 6.546 12 N -0.599 5.599 13 C 0.074 3.926 14 C 0.115 3.885 15 C -0.163 4.163 16 C 0.169 3.831 17 N -0.709 5.709 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.174 4.174 27 N -0.296 5.296 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.083 0.917 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.484 18.740 15.894 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.306 4.306 4 C -0.041 4.041 5 C -0.152 4.152 6 N -0.148 5.148 7 C 0.010 3.990 8 C -0.158 4.158 9 C -0.177 4.177 10 C 0.299 3.701 11 O -0.424 6.424 12 N -0.330 5.330 13 C -0.069 4.069 14 C 0.012 3.988 15 C -0.203 4.203 16 C 0.056 3.944 17 N -0.347 5.347 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.216 4.216 27 N -0.118 5.118 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.502 17.565 15.253 29.112 hybrid contribution 0.936 0.386 -0.312 1.060 sum -16.566 17.952 14.940 28.634 Atomic orbital electron populations 1.20161 0.86799 1.03276 1.02792 1.22311 0.96914 0.90836 0.99545 1.21103 0.91007 0.99705 1.18772 1.21116 0.97358 0.84747 1.00903 1.20477 0.92984 0.98151 1.03595 1.48528 1.05293 1.04002 1.57027 1.21742 0.83853 0.94977 0.98432 1.21705 0.97916 1.01002 0.95168 1.21601 0.99072 1.01718 0.95355 1.20521 0.80093 0.78283 0.91215 1.90696 1.53150 1.52016 1.46501 1.47895 1.28830 1.48788 1.07531 1.21813 0.96209 1.00188 0.88734 1.22606 0.96958 0.97142 0.82083 1.23924 1.00155 0.95177 1.01033 1.21345 0.88281 0.88751 0.95989 1.42339 1.33219 1.35557 1.23596 1.19277 1.06760 1.12546 0.99132 0.91040 1.24758 0.99731 0.98393 0.97877 1.69647 1.38222 1.22331 1.27886 0.86251 0.81313 0.77316 0.81207 1.21213 1.21666 1.21184 1.24317 0.93294 1.01648 1.02322 1.77335 0.86286 1.22680 1.25506 0.90672 0.90514 0.90964 0.83778 0.89971 0.89664 0.91099 0.88573 0.88890 0.90574 0.90089 0.88496 0.88647 0.92393 0.91300 0.89971 0.86937 0.91793 0.90103 0.90271 0.78124 0.93396 0.89890 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.00 0.38 -0.13 16 2 C 0.07 0.74 7.22 -82.41 -0.59 0.14 16 3 C -0.28 -2.62 10.65 -40.01 -0.43 -3.05 16 4 C 0.09 0.79 6.93 -82.27 -0.57 0.22 16 5 C -0.09 -0.52 10.12 36.00 0.36 -0.16 16 6 N -0.37 -3.80 3.61 -57.14 -0.21 -4.01 16 7 C 0.13 0.99 6.25 -4.04 -0.03 0.96 16 8 C -0.12 -1.10 4.83 -26.74 -0.13 -1.23 16 9 C -0.14 -1.12 4.25 -27.89 -0.12 -1.24 16 10 C 0.51 6.68 7.67 -10.99 -0.08 6.60 16 11 O -0.55 -9.33 15.47 5.55 0.09 -9.24 16 12 N -0.60 -7.77 3.08 -173.00 -0.53 -8.30 16 13 C 0.07 0.74 8.85 59.85 0.53 1.27 16 14 C 0.12 1.76 4.20 -67.12 -0.28 1.48 16 15 C -0.16 -2.69 7.37 -25.91 -0.19 -2.88 16 16 C 0.17 3.27 4.48 -67.12 -0.30 2.97 16 17 N -0.71 -17.24 5.40 -52.64 -0.28 -17.52 16 18 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.17 -2.90 7.30 -25.92 -0.19 -3.09 16 27 N -0.30 -3.67 12.57 33.67 0.42 -3.25 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.31 7.08 -51.93 -0.37 -0.06 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.45 7.04 -51.93 -0.37 0.08 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.10 0.63 7.40 -51.93 -0.38 0.25 16 40 H 0.10 0.55 8.11 -51.93 -0.42 0.13 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 43 H 0.08 0.95 6.33 -51.93 -0.33 0.62 16 44 H 0.11 1.84 7.24 -51.93 -0.38 1.46 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.08 1.33 6.89 -51.93 -0.36 0.98 16 47 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 48 H 0.38 9.84 7.92 -40.82 -0.32 9.51 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.08 1.41 6.72 -51.93 -0.35 1.06 16 51 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 413.05 15.07 6.22 6.22 Total: -1.00 -34.82 413.05 -9.12 -43.94 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.64 Total: 7.33 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.89 Total: -5.39 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.12 Total: -59.86 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.82 -9.12 -43.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734600708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.712 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds