Wall clock time and date at job start Sat Apr 11 2020 04:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39875 * 125.89985 * 2 1 4 4 C 1.35313 * 107.92254 * 179.71664 * 3 2 1 5 5 C 1.50694 * 126.12717 * 180.26691 * 4 3 2 6 6 N 1.34951 * 107.74191 * 0.41851 * 4 3 2 7 7 C 1.46505 * 126.03199 * 179.84303 * 6 4 3 8 8 C 1.52994 * 109.46934 * 269.71708 * 7 6 4 9 9 C 1.52998 * 109.47305 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47565 * 179.97438 * 9 8 7 11 11 O 1.21286 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00550 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99795 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00541 * 179.97438 * 12 10 9 15 15 C 1.53784 * 113.61569 * 240.00166 * 14 12 10 16 16 C 1.53787 * 87.07923 * 220.01663 * 15 14 12 17 17 N 1.46501 * 113.61128 * 139.98386 * 16 15 14 18 18 C 1.36937 * 119.99940 * 155.00138 * 17 16 15 19 19 H 1.07995 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99758 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99944 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47131 * 59.99556 * 22 20 18 24 24 H 1.48499 * 109.46950 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46857 * 299.99710 * 22 20 18 26 26 C 1.53779 * 113.61581 * 142.50385 * 14 12 10 27 27 N 1.30835 * 125.90293 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47472 * 270.00144 * 1 2 3 29 29 H 1.09007 * 109.47429 * 30.00539 * 1 2 3 30 30 H 1.09004 * 109.47003 * 150.00161 * 1 2 3 31 31 H 1.08002 * 126.03324 * 359.97398 * 3 2 1 32 32 H 1.09003 * 109.46828 * 270.18141 * 5 4 3 33 33 H 1.09002 * 109.47780 * 30.18007 * 5 4 3 34 34 H 1.08995 * 109.47486 * 150.18129 * 5 4 3 35 35 H 1.08999 * 109.47321 * 149.71644 * 7 6 4 36 36 H 1.09005 * 109.46979 * 29.71856 * 7 6 4 37 37 H 1.09005 * 109.47448 * 60.00203 * 8 7 6 38 38 H 1.08999 * 109.47271 * 300.00325 * 8 7 6 39 39 H 1.08999 * 109.47305 * 59.99719 * 9 8 7 40 40 H 1.08999 * 109.47052 * 300.00252 * 9 8 7 41 41 H 1.09004 * 109.46666 * 269.99777 * 13 12 10 42 42 H 1.08999 * 109.47266 * 29.99467 * 13 12 10 43 43 H 1.08995 * 109.47412 * 150.00054 * 13 12 10 44 44 H 1.09002 * 112.90477 * 11.25212 * 14 12 10 45 45 H 1.09004 * 113.61451 * 105.47149 * 15 14 12 46 46 H 1.08994 * 113.61477 * 334.56451 * 15 14 12 47 47 H 1.09000 * 113.61529 * 270.88430 * 16 15 14 48 48 H 0.97005 * 120.00129 * 334.99728 * 17 16 15 49 49 H 0.97007 * 119.99563 * 179.97438 * 21 20 18 50 50 H 1.09006 * 113.61307 * 25.43652 * 26 14 12 51 51 H 1.09007 * 113.61642 * 254.53409 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0064 5 6 4.8349 1.5990 0.0144 6 7 3.6087 -0.6341 0.0009 7 6 4.7899 -1.5007 0.0015 8 6 5.2019 -1.8022 -1.4407 9 6 6.4351 -2.7078 -1.4402 10 6 6.8406 -3.0053 -2.8607 11 8 6.2055 -2.5394 -3.7829 12 7 7.9090 -3.7892 -3.1065 13 6 8.6760 -4.3525 -1.9926 14 6 8.3029 -4.0789 -4.4874 15 6 8.2823 -5.5774 -4.8325 16 6 9.5776 -5.3325 -5.6244 17 7 10.5668 -6.4030 -5.4771 18 6 11.5028 -6.6096 -6.4551 19 1 11.5115 -5.9837 -7.3351 20 6 12.4404 -7.6237 -6.3152 21 7 12.4301 -8.3861 -5.2424 22 14 13.7178 -7.9052 -7.6489 23 1 14.5380 -6.6785 -7.8155 24 1 14.5958 -9.0385 -7.2619 25 1 13.0351 -8.2219 -8.9290 26 6 9.8256 -4.1323 -4.6955 27 7 2.2742 -1.0598 0.0005 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9922 2.1598 -0.0004 32 1 5.1329 1.8162 -1.0114 33 1 4.6057 2.5309 0.5312 34 1 5.6492 1.0890 0.5290 35 1 4.5561 -2.4332 0.5151 36 1 5.6090 -0.9981 0.5159 37 1 5.4358 -0.8697 -1.9544 38 1 4.3828 -2.3048 -1.9551 39 1 6.2009 -3.6403 -0.9267 40 1 7.2544 -2.2056 -0.9256 41 1 9.4742 -3.6637 -1.7160 42 1 8.0165 -4.5063 -1.1384 43 1 9.1079 -5.3066 -2.2945 44 1 7.7842 -3.4559 -5.2161 45 1 7.4378 -5.8703 -5.4564 46 1 8.4158 -6.2266 -3.9672 47 1 9.4074 -5.0521 -6.6640 48 1 10.5588 -6.9654 -4.6868 49 1 13.0851 -9.0950 -5.1449 50 1 10.3810 -4.3865 -3.7926 51 1 10.2272 -3.2585 -5.2087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734600708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:07:23 Heat of formation + Delta-G solvation = 40.887080 kcal Electronic energy + Delta-G solvation = -27900.596355 eV Core-core repulsion = 24029.467375 eV Total energy + Delta-G solvation = -3871.128981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21551 -41.35516 -39.49097 -36.41470 -36.17902 -34.89000 -33.83695 -32.51668 -31.90061 -30.01673 -27.96979 -27.89279 -27.23474 -26.56005 -26.06146 -24.19626 -22.74187 -21.33745 -20.69935 -20.22767 -19.94514 -19.04910 -18.24373 -17.71917 -17.14278 -17.09366 -16.35441 -16.28825 -16.04121 -15.75915 -15.24939 -14.99105 -14.72863 -14.62281 -14.29282 -14.15656 -14.00732 -13.91774 -13.68567 -13.51351 -13.29391 -13.26818 -13.19952 -13.13974 -12.93997 -12.81762 -12.74651 -12.68957 -12.46097 -12.27728 -12.16070 -11.99236 -11.86577 -11.68486 -11.43445 -11.42845 -10.88985 -10.79554 -10.00476 -9.59048 -9.41743 -8.99980 -7.95586 -5.23811 0.91437 1.48260 1.50297 1.56405 1.57857 1.60619 1.83630 2.05579 2.56735 3.35996 3.46157 3.56592 3.73510 3.74071 3.79647 3.88043 3.92872 3.97156 4.12125 4.20696 4.26455 4.27096 4.28837 4.39341 4.42455 4.55100 4.60291 4.70102 4.73235 4.74086 4.78471 4.81167 4.83191 4.86210 4.89336 4.99712 5.02212 5.03703 5.06774 5.09386 5.12451 5.20144 5.35689 5.42334 5.51274 5.65420 5.80149 6.18782 6.26255 6.46759 6.81803 7.16748 7.33303 8.07796 8.32392 9.27078 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.035033 B = 0.001615 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.053212 B =17331.196592 C =17429.724564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.056 3.944 3 C -0.297 4.297 4 C 0.082 3.918 5 C -0.092 4.092 6 N -0.377 5.377 7 C 0.130 3.870 8 C -0.108 4.108 9 C -0.125 4.125 10 C 0.504 3.496 11 O -0.594 6.594 12 N -0.600 5.600 13 C 0.068 3.932 14 C 0.130 3.870 15 C -0.151 4.151 16 C 0.151 3.849 17 N -0.721 5.721 18 C -0.249 4.249 19 H 0.075 0.925 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.971 3.029 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.280 1.280 26 C -0.157 4.157 27 N -0.344 5.344 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.376 0.624 49 H 0.251 0.749 50 H 0.084 0.916 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.075 20.313 17.527 31.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.110 4.110 3 C -0.326 4.326 4 C -0.046 4.046 5 C -0.150 4.150 6 N -0.159 5.159 7 C 0.010 3.990 8 C -0.147 4.147 9 C -0.165 4.165 10 C 0.295 3.705 11 O -0.475 6.475 12 N -0.331 5.331 13 C -0.074 4.074 14 C 0.025 3.975 15 C -0.191 4.191 16 C 0.040 3.960 17 N -0.359 5.359 18 C -0.380 4.380 19 H 0.093 0.907 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.800 3.200 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.206 1.206 26 C -0.199 4.199 27 N -0.167 5.167 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.180 0.820 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.208 0.792 49 H 0.060 0.940 50 H 0.102 0.898 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.115 19.173 16.898 30.759 hybrid contribution 0.733 -0.033 -0.839 1.115 sum -16.382 19.140 16.059 29.877 Atomic orbital electron populations 1.20262 0.85063 1.03818 1.03750 1.22895 0.98344 0.90959 0.98777 1.21479 0.91340 1.00405 1.19329 1.21758 0.98630 0.84746 0.99431 1.20606 0.91918 0.98316 1.04145 1.48772 1.05197 1.04826 1.57097 1.21925 0.84095 0.95686 0.97296 1.21538 0.97143 1.00045 0.95951 1.21634 0.99562 1.03071 0.92195 1.21399 0.79146 0.77165 0.92836 1.90682 1.54577 1.53822 1.48458 1.47953 1.29215 1.48847 1.07063 1.22056 0.97184 0.99504 0.88655 1.22192 0.95631 0.95762 0.83887 1.23772 0.98372 0.96379 1.00547 1.21631 0.88771 0.88799 0.96760 1.42455 1.33908 1.36788 1.22770 1.19657 1.06871 1.11971 0.99548 0.90698 1.25515 1.02033 0.98751 1.00072 1.69791 1.39112 1.23065 1.29710 0.85252 0.78911 0.77050 0.78781 1.20422 1.22128 1.20642 1.24056 0.94453 0.99995 1.01383 1.77250 0.87711 1.24206 1.27539 0.89427 0.88789 0.91552 0.82007 0.89826 0.88024 0.89366 0.87914 0.85330 0.92057 0.93851 0.85921 0.84838 0.90887 0.87639 0.91640 0.88059 0.91806 0.89848 0.90768 0.79179 0.93984 0.89787 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.45 71.23 0.74 -0.22 16 2 C 0.06 1.17 7.22 43.10 0.31 1.48 16 3 C -0.30 -5.38 10.65 21.99 0.23 -5.15 16 4 C 0.08 1.39 6.93 41.40 0.29 1.68 16 5 C -0.09 -0.78 10.12 71.23 0.72 -0.06 16 6 N -0.38 -7.45 3.61 -334.70 -1.21 -8.66 16 7 C 0.13 1.66 6.25 86.38 0.54 2.20 16 8 C -0.11 -1.84 4.83 30.59 0.15 -1.69 16 9 C -0.12 -1.65 4.25 29.85 0.13 -1.52 16 10 C 0.50 12.35 7.67 87.66 0.67 13.02 16 11 O -0.59 -20.34 15.47 -3.05 -0.05 -20.38 16 12 N -0.60 -14.41 3.08 -819.64 -2.53 -16.93 16 13 C 0.07 1.15 8.85 127.77 1.13 2.28 16 14 C 0.13 3.87 4.20 45.52 0.19 4.06 16 15 C -0.15 -4.94 7.37 31.12 0.23 -4.71 16 16 C 0.15 5.84 4.48 45.52 0.20 6.05 16 17 N -0.72 -35.35 5.40 -320.44 -1.73 -37.08 16 18 C -0.25 -13.58 9.97 84.03 0.84 -12.75 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 21 N -0.97 -57.66 13.06 21.65 0.28 -57.37 16 22 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 26 C -0.16 -5.12 7.30 31.12 0.23 -4.89 16 27 N -0.34 -8.62 12.57 -47.39 -0.60 -9.22 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.44 7.08 -2.39 -0.02 0.42 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.13 0.70 7.04 -2.38 -0.02 0.68 16 37 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 38 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 39 H 0.12 1.07 7.40 -2.39 -0.02 1.05 16 40 H 0.13 0.84 8.11 -2.39 -0.02 0.82 16 41 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.11 1.03 6.44 -2.39 -0.02 1.01 16 43 H 0.06 1.38 6.33 -2.39 -0.02 1.36 16 44 H 0.10 3.31 7.24 -2.39 -0.02 3.29 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.08 2.71 6.89 -2.39 -0.02 2.69 16 47 H 0.07 2.92 8.10 -2.39 -0.02 2.90 16 48 H 0.38 19.49 7.92 -92.70 -0.73 18.76 16 49 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 50 H 0.08 2.74 6.72 -2.38 -0.02 2.73 16 51 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -78.43 413.05 3.46 -74.97 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.19 Total: 30.99 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 7.07 Total: -3.75 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -5.78 Total: -129.27 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -78.43 3.46 -74.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734600708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.860 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds