Wall clock time and date at job start Sat Apr 11 2020 04:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47146 * 2 1 4 4 C 1.39863 * 125.90028 * 125.00054 * 3 2 1 5 5 C 1.35306 * 107.92353 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.12767 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46855 * 85.02757 * 6 5 4 8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99793 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47092 * 34.99824 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99565 * 10 9 7 13 13 C 1.52996 * 109.47328 * 300.00366 * 12 10 9 14 14 C 1.53002 * 109.46891 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.46978 * 60.00410 * 14 13 12 16 16 H 1.09001 * 109.47375 * 59.99908 * 15 14 13 17 17 N 1.46504 * 109.47417 * 179.97438 * 15 14 13 18 18 C 1.36937 * 119.99777 * 275.00036 * 17 15 14 19 19 H 1.08003 * 119.99797 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00162 * 179.97438 * 18 17 15 21 21 N 1.31627 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00459 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46762 * 60.00181 * 22 20 18 24 24 H 1.48499 * 109.47268 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46977 * 300.00596 * 22 20 18 26 26 C 1.52997 * 109.47007 * 154.99772 * 10 9 7 27 27 N 1.34951 * 107.74641 * 0.22782 * 5 4 3 28 28 C 1.46496 * 126.03620 * 179.77104 * 27 5 4 29 29 N 1.30836 * 125.89861 * 305.04259 * 3 2 1 30 30 H 1.09003 * 109.47463 * 59.99970 * 1 2 3 31 31 H 1.08997 * 109.47614 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47404 * 299.99701 * 1 2 3 33 33 H 1.09000 * 109.46909 * 240.00317 * 2 1 3 34 34 H 1.08993 * 109.47106 * 120.00398 * 2 1 3 35 35 H 1.08008 * 126.03765 * 0.06119 * 4 3 2 36 36 H 1.09002 * 109.47143 * 325.02539 * 6 5 4 37 37 H 1.09002 * 109.47176 * 205.02226 * 6 5 4 38 38 H 0.97004 * 119.99983 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 40 40 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 41 41 H 1.09004 * 109.47108 * 179.97438 * 13 12 10 42 42 H 1.08992 * 109.47554 * 59.99639 * 13 12 10 43 43 H 1.09001 * 109.47142 * 300.00176 * 14 13 12 44 44 H 1.09002 * 109.47097 * 180.02562 * 14 13 12 45 45 H 0.96997 * 120.00148 * 94.99044 * 17 15 14 46 46 H 0.96993 * 120.00181 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.47533 * 179.97438 * 26 10 9 48 48 H 1.08996 * 109.47853 * 300.00060 * 26 10 9 49 49 H 1.09003 * 109.46916 * 90.00180 * 28 27 5 50 50 H 1.09001 * 109.46772 * 209.99864 * 28 27 5 51 51 H 1.09003 * 109.47478 * 330.00046 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9184 1.9774 0.9280 5 6 3.1211 3.2708 0.5863 6 6 4.0053 4.2531 1.3105 7 6 5.4234 4.1075 0.8219 8 8 5.6900 3.2866 -0.0301 9 7 6.3957 4.8888 1.3325 10 6 7.7744 4.7469 0.8580 11 1 7.7697 4.5028 -0.2044 12 6 8.4687 3.6269 1.6356 13 6 8.4752 3.9696 3.1267 14 6 9.2276 5.2839 3.3446 15 6 8.5333 6.4038 2.5671 16 1 7.5075 6.5095 2.9202 17 7 9.2532 7.6625 2.7762 18 6 8.9794 8.4337 3.8741 19 1 8.2323 8.1141 4.5857 20 6 9.6618 9.6260 4.0726 21 7 10.5719 10.0157 3.2051 22 14 9.2877 10.6784 5.5699 23 1 9.5616 9.8986 6.8038 24 1 10.1449 11.8908 5.5495 25 1 7.8589 11.0823 5.5466 26 6 8.5266 6.0612 1.0759 27 7 2.3853 3.5252 -0.5160 28 6 2.3048 4.8065 -1.2217 29 7 1.7143 2.3470 -0.8677 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.3628 1.4651 1.7687 36 1 3.9678 4.0546 2.3817 37 1 3.6566 5.2675 1.1166 38 1 6.1825 5.5452 2.0143 39 1 7.9327 2.6906 1.4802 40 1 9.4943 3.5210 1.2822 41 1 8.9695 3.1714 3.6807 42 1 7.4495 4.0752 3.4798 43 1 10.2534 5.1782 2.9915 44 1 9.2327 5.5278 4.4070 45 1 9.9240 7.9496 2.1370 46 1 11.0485 10.8490 3.3436 47 1 9.5526 5.9555 0.7232 48 1 8.0321 6.8591 0.5220 49 1 3.0773 4.8475 -1.9896 50 1 1.3241 4.9038 -1.6874 51 1 2.4532 5.6215 -0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981235310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:38 Heat of formation + Delta-G solvation = 28.927896 kcal Electronic energy + Delta-G solvation = -29020.851871 eV Core-core repulsion = 25149.204301 eV Total energy + Delta-G solvation = -3871.647570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50412 -40.02833 -37.98260 -35.00861 -34.51349 -33.17049 -32.29589 -31.90105 -31.19322 -29.75016 -28.00269 -27.46224 -26.74859 -23.79424 -23.66202 -22.29052 -21.63522 -20.99323 -20.37796 -19.16461 -18.86245 -17.49949 -17.11167 -16.81104 -15.70651 -15.58610 -15.33556 -15.14622 -14.61541 -14.48602 -14.38915 -14.01833 -13.85822 -13.78178 -13.53587 -13.41301 -13.08783 -12.80663 -12.65173 -12.57980 -12.34093 -12.11222 -12.03235 -11.85841 -11.76339 -11.60319 -11.38999 -11.04964 -10.91981 -10.81998 -10.56179 -10.42531 -10.26839 -10.22305 -9.95196 -9.79548 -9.57306 -9.17027 -8.99959 -8.88962 -8.56403 -7.02798 -5.82805 -3.12101 1.69995 2.35247 2.58694 2.65771 3.28062 3.38355 3.43209 3.44441 4.21543 4.30609 4.51423 4.64433 4.72616 4.77792 4.90992 4.94542 5.04010 5.06703 5.09994 5.12894 5.14863 5.24412 5.29579 5.44544 5.53827 5.57610 5.59727 5.64650 5.67395 5.71739 5.82914 5.84705 5.93637 5.98245 6.01698 6.06390 6.08336 6.20604 6.24991 6.45042 6.52253 6.59115 6.61512 6.66985 6.87522 6.88838 7.03578 7.52341 7.62097 7.64281 8.20604 8.35486 9.46608 10.04034 10.38258 11.39561 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002257 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.114657 B =12404.772568 C =12930.876439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.074 3.926 4 C -0.254 4.254 5 C 0.109 3.891 6 C -0.084 4.084 7 C 0.515 3.485 8 O -0.533 6.533 9 N -0.716 5.716 10 C 0.153 3.847 11 H 0.082 0.918 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.181 3.819 16 H 0.041 0.959 17 N -0.725 5.725 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.134 4.134 27 N -0.367 5.367 28 C 0.099 3.901 29 N -0.293 5.293 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.404 0.596 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.089 0.911 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.258 -15.738 -5.403 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.283 4.283 5 C -0.019 4.019 6 C -0.126 4.126 7 C 0.299 3.701 8 O -0.410 6.410 9 N -0.369 5.369 10 C 0.048 3.952 11 H 0.101 0.899 12 C -0.166 4.166 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.071 3.929 16 H 0.059 0.941 17 N -0.365 5.365 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.172 4.172 27 N -0.149 5.149 28 C -0.042 4.042 29 N -0.116 5.116 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.240 0.760 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.217 0.783 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.107 0.893 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.794 -15.768 -7.003 24.077 hybrid contribution 0.650 1.056 1.740 2.136 sum -16.145 -14.712 -5.264 22.468 Atomic orbital electron populations 1.21705 0.94551 1.01610 1.02418 1.19946 0.96112 0.88805 1.03167 1.22196 0.97176 0.96214 0.93542 1.21020 1.07807 0.93720 1.05775 1.20205 0.95655 0.95948 0.90112 1.20314 0.91322 0.99156 1.01807 1.20238 0.86470 0.81219 0.82137 1.90738 1.83316 1.35176 1.31723 1.46191 1.08207 1.39523 1.43001 1.20946 0.79945 0.95799 0.98495 0.89946 1.21893 1.00598 0.97938 0.96161 1.21496 1.00433 0.98091 0.95241 1.22293 0.99589 0.94255 1.01637 1.20141 0.94867 0.86794 0.91092 0.94083 1.42419 1.46155 1.19878 1.28053 1.19158 1.17269 1.00388 1.00334 0.91290 1.24748 0.99053 0.98392 0.98711 1.69647 1.27864 1.23843 1.36638 0.86291 0.77417 0.79951 0.82638 1.21278 1.21714 1.21299 1.22131 1.00695 0.95290 0.99109 1.48295 1.35474 1.09684 1.21422 1.21846 1.04234 0.80585 0.97556 1.77240 1.20182 0.91174 1.22963 0.92198 0.92314 0.92711 0.90374 0.90044 0.83833 0.86125 0.87728 0.76012 0.92075 0.91197 0.92855 0.92624 0.92576 0.92066 0.78251 0.93431 0.90534 0.91276 0.90654 0.89262 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.87 37.16 0.37 -0.76 16 2 C -0.04 -0.36 6.51 -27.88 -0.18 -0.55 16 3 C 0.07 0.91 6.49 -82.41 -0.53 0.37 16 4 C -0.25 -3.06 10.63 -40.02 -0.43 -3.49 16 5 C 0.11 1.27 5.42 -82.26 -0.45 0.83 16 6 C -0.08 -0.77 5.99 -29.03 -0.17 -0.94 16 7 C 0.51 6.26 7.79 -10.98 -0.09 6.17 16 8 O -0.53 -8.64 15.70 5.56 0.09 -8.55 16 9 N -0.72 -8.28 4.23 -53.81 -0.23 -8.51 16 10 C 0.15 1.99 2.78 -67.93 -0.19 1.80 16 11 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 12 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 13 C -0.11 -1.51 5.77 -26.73 -0.15 -1.66 16 14 C -0.14 -2.25 5.50 -26.73 -0.15 -2.40 16 15 C 0.18 3.18 2.60 -67.93 -0.18 3.00 16 16 H 0.04 0.70 6.44 -51.93 -0.33 0.37 16 17 N -0.72 -16.88 5.12 -53.42 -0.27 -17.15 16 18 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 19 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 22 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.13 -1.98 5.08 -26.73 -0.14 -2.12 16 27 N -0.37 -4.44 4.01 -63.88 -0.26 -4.69 16 28 C 0.10 0.83 11.27 59.84 0.67 1.50 16 29 N -0.29 -3.96 12.54 33.67 0.42 -3.54 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.71 6.94 -51.93 -0.36 0.34 16 38 H 0.40 4.24 6.87 -40.82 -0.28 3.96 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.38 9.66 7.80 -40.82 -0.32 9.34 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.51 6.97 -51.93 -0.36 0.15 16 LS Contribution 408.78 15.07 6.16 6.16 Total: -1.00 -33.71 408.78 -9.14 -42.86 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.75 Total: 10.27 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.00 Total: -6.90 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.39 Total: -60.41 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.71 -9.14 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981235310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.786 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds